Download or read book Introducing Markdown and Pandoc written by Thomas Mailund and published by Apress. This book was released on 2019-08-16 with total page 141 pages. Available in PDF, EPUB and Kindle. Book excerpt: Discover how to write manuscripts in Markdown and translate them with Pandoc into different output formats. You’ll use Markdown to annotate text formatting information with a strong focus on semantic information: you can annotate your text with information about where chapters and sections start, but not how chapter and heading captions should be formatted. As a result, you’ll decouple the structure of a text from how it is visualized and make it easier for you to produce different kinds of output. The same text can easily be formatted as HTML, PDF, or Word documents, with various visual styles, by tools that understand the markup annotations. Finally, you’ll learn to use Pandoc, a tool for translating between different markup languages, such as LaTeX, HTML, and Markdown. This book will not describe all the functionality that Pandoc provides, but will teach you how to translate Markdown documents, how to customize your documents using templates, and how to extend Pandoc’s functionality using filters. If that is something you are interested in, Introducing Markdown and Pandoc will get you started. With this set of skills you’ll be able to write more efficiently without worrying about needless formatting and other distractions. What You Will LearnWhy and how to use Markdown and PandocWrite MarkdownUse extensions available in Pandoc and MarkdownWrite math and code blocksUse templates and produce documents Who This Book Is For Programmers and problem solvers looking for technical documentation solutions.

Download or read book R Markdown written by Yihui Xie and published by CRC Press. This book was released on 2018-07-27 with total page 323 pages. Available in PDF, EPUB and Kindle. Book excerpt: R Markdown: The Definitive Guide is the first official book authored by the core R Markdown developers that provides a comprehensive and accurate reference to the R Markdown ecosystem. With R Markdown, you can easily create reproducible data analysis reports, presentations, dashboards, interactive applications, books, dissertations, websites, and journal articles, while enjoying the simplicity of Markdown and the great power of R and other languages. In this book, you will learn Basics: Syntax of Markdown and R code chunks, how to generate figures and tables, and how to use other computing languages Built-in output formats of R Markdown: PDF/HTML/Word/RTF/Markdown documents and ioslides/Slidy/Beamer/PowerPoint presentations Extensions and applications: Dashboards, Tufte handouts, xaringan/reveal.js presentations, websites, books, journal articles, and interactive tutorials Advanced topics: Parameterized reports, HTML widgets, document templates, custom output formats, and Shiny documents. Yihui Xie is a software engineer at RStudio. He has authored and co-authored several R packages, including knitr, rmarkdown, bookdown, blogdown, shiny, xaringan, and animation. He has published three other books, Dynamic Documents with R and knitr, bookdown: Authoring Books and Technical Documents with R Markdown, and blogdown: Creating Websites with R Markdown. J.J. Allaire is the founder of RStudio and the creator of the RStudio IDE. He is an author of several packages in the R Markdown ecosystem including rmarkdown, flexdashboard, learnr, and radix. Garrett Grolemund is the co-author of R for Data Science and author of Hands-On Programming with R. He wrote the lubridate R package and works for RStudio as an advocate who trains engineers to do data science with R and the Tidyverse.

Download or read book bookdown written by Yihui Xie and published by CRC Press. This book was released on 2016-12-12 with total page 140 pages. Available in PDF, EPUB and Kindle. Book excerpt: bookdown: Authoring Books and Technical Documents with R Markdown presents a much easier way to write books and technical publications than traditional tools such as LaTeX and Word. The bookdown package inherits the simplicity of syntax and flexibility for data analysis from R Markdown, and extends R Markdown for technical writing, so that you can make better use of document elements such as figures, tables, equations, theorems, citations, and references. Similar to LaTeX, you can number and cross-reference these elements with bookdown. Your document can even include live examples so readers can interact with them while reading the book. The book can be rendered to multiple output formats, including LaTeX/PDF, HTML, EPUB, and Word, thus making it easy to put your documents online. The style and theme of these output formats can be customized. We used books and R primarily for examples in this book, but bookdown is not only for books or R. Most features introduced in this book also apply to other types of publications: journal papers, reports, dissertations, course handouts, study notes, and even novels. You do not have to use R, either. Other choices of computing languages include Python, C, C++, SQL, Bash, Stan, JavaScript, and so on, although R is best supported. You can also leave out computing, for example, to write a fiction. This book itself is an example of publishing with bookdown and R Markdown, and its source is fully available on GitHub.

Download or read book R Markdown Cookbook written by Yihui Xie and published by CRC Press. This book was released on 2020-10-21 with total page 353 pages. Available in PDF, EPUB and Kindle. Book excerpt: This new book written by the developers of R Markdown is an essential reference that will help users learn and make full use of the software. Those new to R Markdown will appreciate the short, practical examples that address the most common issues users encounter. Frequent users will also benefit from the wide ranging tips and tricks that expose ‘hidden’ features, support customization and demonstrate the many new and varied applications of the software. After reading this book users will learn how to: Enhance your R Markdown content with diagrams, citations, and dynamically generated text Streamline your workflow with child documents, code chunk references, and caching Control the formatting and layout with Pandoc markdown syntax or by writing custom HTML and LaTeX templates Utilize chunk options and hooks to fine-tune how your code is processed Switch between different language engineers to seamlessly incorporate python, D3, and more into your analysis

Download or read book The Beginner s Guide to Markdown and Pandoc written by Thomas Mailund and published by . This book was released on 2019-01-16 with total page 81 pages. Available in PDF, EPUB and Kindle. Book excerpt: Markdown is a markup language; the name is a pun. Markup languages are used to annotate text formatting information, typically with a stronger focus on semantic information than direct formatting as you would do with WYSIWYG (what you see is what you get) formatting. With markup languages, you might annotate your text with information about where chapters and sections start, but not how chapter and heading captions should be formatted. Doing this decouples the structure of a text from how it is visualised and makes it easier for you to produce different kinds of output. The same text can easily be formatted as HTML, PDF, or Word documents, with various visual styles, by tools that understand the markup annotations.Pandoc is a tool for translating between different markup languages, such as LaTeX, HTML, and Markdown. I use it for formatting the books I write. This booklet describes how. I will tell you how to write manuscripts in Markdown and translate them with Pandoc into different output formats. I will not describe all the functionality that Pandoc provides, only how it can be used to write papers and books in Markdown. If that is something you are interested in, The Beginner's Guide to Markdown and Pandoc will get you started.

Download or read book Pro Git written by Scott Chacon and published by Apress. This book was released on 2014-11-18 with total page 441 pages. Available in PDF, EPUB and Kindle. Book excerpt: Pro Git (Second Edition) is your fully-updated guide to Git and its usage in the modern world. Git has come a long way since it was first developed by Linus Torvalds for Linux kernel development. It has taken the open source world by storm since its inception in 2005, and this book teaches you how to use it like a pro. Effective and well-implemented version control is a necessity for successful web projects, whether large or small. With this book you’ll learn how to master the world of distributed version workflow, use the distributed features of Git to the full, and extend Git to meet your every need. Written by Git pros Scott Chacon and Ben Straub, Pro Git (Second Edition) builds on the hugely successful first edition, and is now fully updated for Git version 2.0, as well as including an indispensable chapter on GitHub. It’s the best book for all your Git needs.

Download or read book R for Data Science written by Hadley Wickham and published by "O'Reilly Media, Inc.". This book was released on 2016-12-12 with total page 521 pages. Available in PDF, EPUB and Kindle. Book excerpt: Learn how to use R to turn raw data into insight, knowledge, and understanding. This book introduces you to R, RStudio, and the tidyverse, a collection of R packages designed to work together to make data science fast, fluent, and fun. Suitable for readers with no previous programming experience, R for Data Science is designed to get you doing data science as quickly as possible. Authors Hadley Wickham and Garrett Grolemund guide you through the steps of importing, wrangling, exploring, and modeling your data and communicating the results. You'll get a complete, big-picture understanding of the data science cycle, along with basic tools you need to manage the details. Each section of the book is paired with exercises to help you practice what you've learned along the way. You'll learn how to: Wrangle—transform your datasets into a form convenient for analysis Program—learn powerful R tools for solving data problems with greater clarity and ease Explore—examine your data, generate hypotheses, and quickly test them Model—provide a low-dimensional summary that captures true "signals" in your dataset Communicate—learn R Markdown for integrating prose, code, and results

Download or read book Blogdown written by Yihui Xie and published by CRC Press. This book was released on 2017-12-12 with total page 144 pages. Available in PDF, EPUB and Kindle. Book excerpt: blogdown: Creating Websites with R Markdown provides a practical guide for creating websites using the blogdown package in R. In this book, we show you how to use dynamic R Markdown documents to build static websites featuring R code (or other programming languages) with automatically rendered output such as graphics, tables, analysis results, and HTML widgets. The blogdown package is also suitable for technical writing with elements such as citations, footnotes, and LaTeX math. This makes blogdown an ideal platform for any website designed to communicate information about data science, data analysis, data visualization, or R programming. Note that blogdown is not just for blogging or sites about R; it can also be used to create general-purpose websites. By default, blogdown uses Hugo, a popular open-source static website generator, which provides a fast and flexible way to build your site content to be shared online. Other website generators like Jekyll and Hexo are also supported. In this book, you will learn how to: Build a website using the blogdown package; Create blog posts and other website content as dynamic documents that can be easily edited and updated; Customize Hugo templates to suit your site's needs; Publish your website online; Migrate your existing websites to blogdown and Hugo. Yihui Xie is a software engineer at RStudio. He has authored and co-authored several R packages, including knitr, rmarkdown, bookdown, blogdown, shiny, xaringan, and animation. He has published two other books, Dynamic Documents with R and knitr and bookdown: Authoring Books and Technical Documents with R Markdown. Amber Thomas is a data journalist and "maker" at the online publication of visual essays: The Pudding (https: //pudding.cool). Her educational background was marine biology, but she has a strong love of data analysis, visualization, and storytelling. Alison Presmanes Hill is an Associate Professor of Pediatrics at Oregon Health & Science University, where she teaches Computer Science courses on data analysis, data science, and visualization. Her research focuses on using computational methods to study the development of children with neurodevelopmental disorders, in particular Autism Spectrum Disorders.

Download or read book The Road Chose Me Volume 1 written by Dan Grec and published by Road Chose Me. This book was released on 2018-05-05 with total page 266 pages. Available in PDF, EPUB and Kindle. Book excerpt: When Dan set out to drive his Jeep from the Northern tip of Alaska to Tierra del Fuego on the Southern tip of South America, he had no idea how much the adventure would change his life. Over the course of two years, Dan's expedition spanned forty thousand miles through sixteen countries. Now he will never be the same. After years of saving, dreaming and planning, Dan wanted to find out if an ordinary guy can achieve the extraordinary. With no sponsorship, a modest savings account and a willingness to learn Spanish, Dan threw himself in. Going solo, with no GPS and sleeping in a ground tent, Dan wanted to experience everything the Americas have to offer. From poking lava with a stick and hiking among world-famous mountains to corrupt military and camping with Ecuadorian locals - every day provided something new. With his eyes and ears open to the world around him, Dan met many interesting and thought-provoking characters. With their guidance and prodding, and by using their unique perspective, Dan was able to learn many valuable life lessons. Running to the beat of a different drum, Latin America was the perfect classroom for Dan to view our modern work-a-day world through an entirely new lens.

Download or read book Docs Like Code written by Anne Gentle and published by Lulu.com. This book was released on 2017-09-09 with total page 118 pages. Available in PDF, EPUB and Kindle. Book excerpt: Looking for a way to invigorate your technical writing team and grow that expertise to include developers, designers, and writers of all backgrounds? When you treat docs like code, you multiply everyone's efforts and streamline processes through collaboration, automation, and innovation. Second edition now available with updates and more information about version control for documents and continuous publishing.

Download or read book Guide to Markdown Mode for Emacs written by Jason Blevins and published by . This book was released on 2017-08-31 with total page 108 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Guide to Markdown Mode for Emacs is a complete reference for the markdown-mode package for users of all levels. The book supplements the online documentation by providing more details about installation, configuration, and movement and editing commands. There are examples throughout that show the Emacs way of editing as it relates to Markdown. Additionally, the book covers more advanced usage such as subtree and structure editing, defun and page movement, marking, narrowing, region management, imenu, etc. It goes beyond the basic documentation by also discussing interaction with other packages such as Flyspell mode, CriticMarkup mode, Pandoc mode, Deft, HTML as Markdown mode, MathJax, and more. Finally, it also contains tips and tricks for custom configuration options such as custom CSS stylesheets, using pre- and post-processors, customizing faces, keeping notes in a local wiki, etc.

Download or read book Using Markdown written by William Dyer and published by Independently Published. This book was released on 2018-04-22 with total page 102 pages. Available in PDF, EPUB and Kindle. Book excerpt: Markdown was created as a simple way for non-programmers to write in an easy-to-read format that could be converted to HTML; it is a text tool that allows anyone to create Web pages without knowing any HTML. While basic Markdown may not be sufficient for creating books, extensions such as CommonMark and Pandoc can take up that slack. Markdown doesn't do everything we might want, but what it does do simplifies writing greatly. The writer can write, using only a small set of syntax rules, while Markdown does the formatting. If you use text for your drafts, it can take you a long way in simplifying the work. Even the drafts can look good. This book is an introduction to basic Markdown. Knowing how to use basic Markdown will carry over into the use of extended packages such as CommonMark and Pandoc. Here, then, we'll cover basic Markdown syntax with examples to show you how you can use it right away. I think that you will be pleasantly surprised at just how much basic Markdown can do.

Download or read book Bioinformatics Data Skills written by Vince Buffalo and published by "O'Reilly Media, Inc.". This book was released on 2015-07 with total page 538 pages. Available in PDF, EPUB and Kindle. Book excerpt: Learn the data skills necessary for turning large sequencing datasets into reproducible and robust biological findings. With this practical guide, youâ??ll learn how to use freely available open source tools to extract meaning from large complex biological data sets. At no other point in human history has our ability to understand lifeâ??s complexities been so dependent on our skills to work with and analyze data. This intermediate-level book teaches the general computational and data skills you need to analyze biological data. If you have experience with a scripting language like Python, youâ??re ready to get started. Go from handling small problems with messy scripts to tackling large problems with clever methods and tools Process bioinformatics data with powerful Unix pipelines and data tools Learn how to use exploratory data analysis techniques in the R language Use efficient methods to work with genomic range data and range operations Work with common genomics data file formats like FASTA, FASTQ, SAM, and BAM Manage your bioinformatics project with the Git version control system Tackle tedious data processing tasks with with Bash scripts and Makefiles

Download or read book Geospatial Health Data written by Paula Moraga and published by CRC Press. This book was released on 2019-11-26 with total page 217 pages. Available in PDF, EPUB and Kindle. Book excerpt: Geospatial health data are essential to inform public health and policy. These data can be used to quantify disease burden, understand geographic and temporal patterns, identify risk factors, and measure inequalities. Geospatial Health Data: Modeling and Visualization with R-INLA and Shiny describes spatial and spatio-temporal statistical methods and visualization techniques to analyze georeferenced health data in R. The book covers the following topics: Manipulate and transform point, areal, and raster data, Bayesian hierarchical models for disease mapping using areal and geostatistical data, Fit and interpret spatial and spatio-temporal models with the Integrated Nested Laplace Approximations (INLA) and the Stochastic Partial Differential Equation (SPDE) approaches, Create interactive and static visualizations such as disease maps and time plots, Reproducible R Markdown reports, interactive dashboards, and Shiny web applications that facilitate the communication of insights to collaborators and policy makers. The book features fully reproducible examples of several disease and environmental applications using real-world data such as malaria in The Gambia, cancer in Scotland and USA, and air pollution in Spain. Examples in the book focus on health applications, but the approaches covered are also applicable to other fields that use georeferenced data including epidemiology, ecology, demography or criminology. The book provides clear descriptions of the R code for data importing, manipulation, modeling and visualization, as well as the interpretation of the results. This ensures contents are fully reproducible and accessible for students, researchers and practitioners.

Download or read book Data Visualization written by Kieran Healy and published by Princeton University Press. This book was released on 2018-12-18 with total page 292 pages. Available in PDF, EPUB and Kindle. Book excerpt: An accessible primer on how to create effective graphics from data This book provides students and researchers a hands-on introduction to the principles and practice of data visualization. It explains what makes some graphs succeed while others fail, how to make high-quality figures from data using powerful and reproducible methods, and how to think about data visualization in an honest and effective way. Data Visualization builds the reader’s expertise in ggplot2, a versatile visualization library for the R programming language. Through a series of worked examples, this accessible primer then demonstrates how to create plots piece by piece, beginning with summaries of single variables and moving on to more complex graphics. Topics include plotting continuous and categorical variables; layering information on graphics; producing effective “small multiple” plots; grouping, summarizing, and transforming data for plotting; creating maps; working with the output of statistical models; and refining plots to make them more comprehensible. Effective graphics are essential to communicating ideas and a great way to better understand data. This book provides the practical skills students and practitioners need to visualize quantitative data and get the most out of their research findings. Provides hands-on instruction using R and ggplot2 Shows how the “tidyverse” of data analysis tools makes working with R easier and more consistent Includes a library of data sets, code, and functions

Download or read book Reproducible Research with R and RStudio written by Christopher Gandrud and published by CRC Press. This book was released on 2020-02-21 with total page 211 pages. Available in PDF, EPUB and Kindle. Book excerpt: Praise for previous editions: "Gandrud has written a great outline of how a fully reproducible research project should look from start to finish, with brief explanations of each tool that he uses along the way... Advanced undergraduate students in mathematics, statistics, and similar fields as well as students just beginning their graduate studies would benefit the most from reading this book. Many more experienced R users or second-year graduate students might find themselves thinking, ‘I wish I’d read this book at the start of my studies, when I was first learning R!’...This book could be used as the main text for a class on reproducible research ..." (The American Statistician) Reproducible Research with R and R Studio, Third Edition brings together the skills and tools needed for doing and presenting computational research. Using straightforward examples, the book takes you through an entire reproducible research workflow. This practical workflow enables you to gather and analyze data as well as dynamically present results in print and on the web. Supplementary materials and example are available on the author’s website. New to the Third Edition Updated package recommendations, examples, URLs, and removed technologies no longer in regular use. More advanced R Markdown (and less LaTeX) in discussions of markup languages and examples. Stronger focus on reproducible working directory tools. Updated discussion of cloud storage services and persistent reproducible material citation. Added discussion of Jupyter notebooks and reproducible practices in industry. Examples of data manipulation with Tidyverse tibbles (in addition to standard data frames) and pivot_longer() and pivot_wider() functions for pivoting data. Features Incorporates the most important advances that have been developed since the editions were published Describes a complete reproducible research workflow, from data gathering to the presentation of results Shows how to automatically generate tables and figures using R Includes instructions on formatting a presentation document via markup languages Discusses cloud storage and versioning services, particularly Github Explains how to use Unix-like shell programs for working with large research projects

Download or read book Markdown vous written by Bernard Pochet and published by . This book was released on 2023 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: With digital technology and what it can offer us but also what it tends to impose on us, it becomes necessary to stop for a moment. This manual is dedicated to academic writing with Markdown and Pandoc. It is both a plea for open digital writing and an introduction to Markdown and Pandoc, and offers a reflection on our tools and methods of academic writing. It is not, however, limited to beginners. The idea is to go back to the basics and not to try to reproduce at all costs everything that is possible with a classic word processor (which we can do without). The aim of this manual is to explain why it is possible to change one's habits in order to write, structure one's ideas and produce quality documents, and to show what is possible with Markdown through a few methods.