Download or read book Ontologies with Python written by Lamy Jean-Baptiste and published by Apress. This book was released on 2021-01-01 with total page 344 pages. Available in PDF, EPUB and Kindle. Book excerpt: Use ontologies in Python, with the Owlready2 module developed for ontology-oriented programming. You will start with an introduction and refresher on Python and OWL ontologies. Then, you will dive straight into how to access, create, and modify ontologies in Python. Next, you will move on to an overview of semantic constructs and class properties followed by how to perform automatic reasoning. You will also learn about annotations, multilingual texts, and how to add Python methods to OWL classes and ontologies. Using medical terminologies as well as direct access to RDF triples is also covered. Python is one of the most used programming languages, especially in the biomedical field, and formal ontologies are also widely used. However, there are limited resources for the use of ontologies in Python. Owlready2, downloaded more than 60,000 times, is a response to this problem, and this book is the first one on the topic of using ontologies with Python. What You Will Learn Use Owlready2 to access and modify OWL ontologies in Python Publish ontologies on dynamic websites Perform automatic reasoning in Python Use well-known ontologies, including DBpedia and Gene Ontology, and terminological resources, such as UMLS (Unified Medical Language System) Integrate Python methods in OWL ontologies Who Is This Book For Beginner to experienced readers from biomedical sciences and artificial intelligence fields would find the book useful.

Download or read book Building Ontologies with Basic Formal Ontology written by Robert Arp and published by MIT Press. This book was released on 2015-08-28 with total page 245 pages. Available in PDF, EPUB and Kindle. Book excerpt: An introduction to the field of applied ontology with examples derived particularly from biomedicine, covering theoretical components, design practices, and practical applications. In the era of “big data,” science is increasingly information driven, and the potential for computers to store, manage, and integrate massive amounts of data has given rise to such new disciplinary fields as biomedical informatics. Applied ontology offers a strategy for the organization of scientific information in computer-tractable form, drawing on concepts not only from computer and information science but also from linguistics, logic, and philosophy. This book provides an introduction to the field of applied ontology that is of particular relevance to biomedicine, covering theoretical components of ontologies, best practices for ontology design, and examples of biomedical ontologies in use. After defining an ontology as a representation of the types of entities in a given domain, the book distinguishes between different kinds of ontologies and taxonomies, and shows how applied ontology draws on more traditional ideas from metaphysics. It presents the core features of the Basic Formal Ontology (BFO), now used by over one hundred ontology projects around the world, and offers examples of domain ontologies that utilize BFO. The book also describes Web Ontology Language (OWL), a common framework for Semantic Web technologies. Throughout, the book provides concrete recommendations for the design and construction of domain ontologies.

Download or read book The Gene Ontology Handbook written by Christophe Dessimoz and published by . This book was released on 2020-10-08 with total page 298 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides a practical and self-contained overview of the Gene Ontology (GO), the leading project to organize biological knowledge on genes and their products across genomic resources. Written for biologists and bioinformaticians, it covers the state-of-the-art of how GO annotations are made, how they are evaluated, and what sort of analyses can and cannot be done with the GO. In the spirit of the Methods in Molecular Biology book series, there is an emphasis throughout the chapters on providing practical guidance and troubleshooting advice. Authoritative and accessible, The Gene Ontology Handbook serves non-experts as well as seasoned GO users as a thorough guide to this powerful knowledge system. This work was published by Saint Philip Street Press pursuant to a Creative Commons license permitting commercial use. All rights not granted by the work's license are retained by the author or authors.

Download or read book Data and Text Processing for Health and Life Sciences written by Francisco M. Couto and published by Springer. This book was released on 2019-06-10 with total page 98 pages. Available in PDF, EPUB and Kindle. Book excerpt: This open access book is a step-by-step introduction on how shell scripting can help solve many of the data processing tasks that Health and Life specialists face everyday with minimal software dependencies. The examples presented in the book show how simple command line tools can be used and combined to retrieve data and text from web resources, to filter and mine literature, and to explore the semantics encoded in biomedical ontologies. To store data this book relies on open standard text file formats, such as TSV, CSV, XML, and OWL, that can be open by any text editor or spreadsheet application. The first two chapters, Introduction and Resources, provide a brief introduction to the shell scripting and describe popular data resources in Health and Life Sciences. The third chapter, Data Retrieval, starts by introducing a common data processing task that involves multiple data resources. Then, this chapter explains how to automate each step of that task by introducing the required commands line tools one by one. The fourth chapter, Text Processing, shows how to filter and analyze text by using simple string matching techniques and regular expressions. The last chapter, Semantic Processing, shows how XPath queries and shell scripting is able to process complex data, such as the graphs used to specify ontologies. Besides being almost immutable for more than four decades and being available in most of our personal computers, shell scripting is relatively easy to learn by Health and Life specialists as a sequence of independent commands. Comprehending them is like conducting a new laboratory protocol by testing and understanding its procedural steps and variables, and combining their intermediate results. Thus, this book is particularly relevant to Health and Life specialists or students that want to easily learn how to process data and text, and which in return may facilitate and inspire them to acquire deeper bioinformatics skills in the future.

Download or read book Semantic Web Programming written by John Hebeler and published by John Wiley & Sons. This book was released on 2011-02-25 with total page 662 pages. Available in PDF, EPUB and Kindle. Book excerpt: The next major advance in the Web-Web 3.0-will be built on semantic Web technologies, which will allow data to be shared and reused across application, enterprise, and community boundaries. Written by a team of highly experienced Web developers, this book explains examines how this powerful new technology can unify and fully leverage the ever-growing data, information, and services that are available on the Internet. Helpful examples demonstrate how to use the semantic Web to solve practical, real-world problems while you take a look at the set of design principles, collaborative working groups, and technologies that form the semantic Web. The companion Web site features full code, as well as a reference section, a FAQ section, a discussion forum, and a semantic blog.

Download or read book Ontology Learning and Population from Text written by Philipp Cimiano and published by Springer Science & Business Media. This book was released on 2006-12-11 with total page 362 pages. Available in PDF, EPUB and Kindle. Book excerpt: In the last decade, ontologies have received much attention within computer science and related disciplines, most often as the semantic web. Ontology Learning and Population from Text: Algorithms, Evaluation and Applications discusses ontologies for the semantic web, as well as knowledge management, information retrieval, text clustering and classification, as well as natural language processing. Ontology Learning and Population from Text: Algorithms, Evaluation and Applications is structured for research scientists and practitioners in industry. This book is also suitable for graduate-level students in computer science.

Download or read book An Introduction to Ontology Engineering written by C. Maria Keet and published by . This book was released on 2018-11-07 with total page 344 pages. Available in PDF, EPUB and Kindle. Book excerpt: An Introduction to Ontology Engineering introduces the student to a comprehensive overview of ontology engineering, and offers hands-on experience that illustrate the theory. The topics covered include: logic foundations for ontologies with languages and automated reasoning, developing good ontologies with methods and methodologies, the top-down approach with foundational ontologies, and the bottomup approach to extract content from legacy material, and a selection of advanced topics that includes Ontology-Based Data Access, the interaction between ontologies and natural languages, and advanced modelling with fuzzy and temporal ontologies. Each chapter contains review questions and exercises, and descriptions of two group assignments are provided as well. The textbook is aimed at advanced undergraduate/postgraduate level in computer science and could fi t a semester course in ontology engineering or a 2-week intensive course. Domain experts and philosophers may fi nd a subset of the chapters of interest, or work through the chapters in a different order. Maria Keet is an Associate Professor with the Department of Computer Science, University of Cape Town, South Africa. She received her PhD in Computer Science in 2008 at the KRDB Research Centre, Free University of Bozen-Bolzano, Italy. Her research focus is on knowledge engineering with ontologies and Ontology, and their interaction with natural language and conceptual data modelling, which has resulted in over 100 peer-reviewed publications. She has developed and taught multiple courses on ontology engineering and related courses at various universities since 2009.

Download or read book Ontologies for Software Engineering and Software Technology written by Coral Calero and published by Springer Science & Business Media. This book was released on 2006-10-12 with total page 344 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book covers two applications of ontologies in software engineering and software technology: sharing knowledge of the problem domain and using a common terminology among all stakeholders; and filtering the knowledge when defining models and metamodels. By presenting the advanced use of ontologies in software research and software projects, this book is of benefit to software engineering researchers in both academia and industry.

Download or read book Ontologies written by Rajiv Kishore and published by Springer Science & Business Media. This book was released on 2007-04-03 with total page 930 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book describes the state-of-the-art in ontology-driven information systems (ODIS) and gives a complete perspective on the problems, solutions and open research questions in this field. The book covers four broad areas: foundations of ODIS, ontological engineering, ODIS architectures, and ODIS applications. It will trigger innovative thought processes and open up significant new domains in ODIS research.

Download or read book Semantic Modeling for Data written by Panos Alexopoulos and published by "O'Reilly Media, Inc.". This book was released on 2020-08-19 with total page 330 pages. Available in PDF, EPUB and Kindle. Book excerpt: What value does semantic data modeling offer? As an information architect or data science professional, let’s say you have an abundance of the right data and the technology to extract business gold—but you still fail. The reason? Bad data semantics. In this practical and comprehensive field guide, author Panos Alexopoulos takes you on an eye-opening journey through semantic data modeling as applied in the real world. You’ll learn how to master this craft to increase the usability and value of your data and applications. You’ll also explore the pitfalls to avoid and dilemmas to overcome for building high-quality and valuable semantic representations of data. Understand the fundamental concepts, phenomena, and processes related to semantic data modeling Examine the quirks and challenges of semantic data modeling and learn how to effectively leverage the available frameworks and tools Avoid mistakes and bad practices that can undermine your efforts to create good data models Learn about model development dilemmas, including representation, expressiveness and content, development, and governance Organize and execute semantic data initiatives in your organization, tackling technical, strategic, and organizational challenges

Download or read book The Practice of Computing Using Python written by William F. Punch and published by . This book was released on 2017 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: For courses in Python Programming Introduces Python programming with an emphasis on problem-solving Now in its Third Edition, Practice of Computing Using Python continues to effectively introduce readers to computational thinking using Python, with a strong emphasis on problem solving through computer science. The authors have chosen Python for its simplicity, powerful built-in data structures, advanced control constructs, and practicality. The text is built from the ground up for Python programming, rather than having been translated from Java or C++. Focusing on data manipulation and analysis as a theme, the text allows readers to work on real problems using Internet-sourced or self-generated data sets that represent their own work and interests. The authors also emphasize program development and provide readers of all backgrounds with a practical foundation in programming that suit their needs. Among other changes, the Third Edition incorporates a switch to the Anaconda distribution, the SPYDER IDE, and a focus on debugging and GUIs. Also available with MyProgrammingLab(TM) MyProgrammingLab is an online learning system designed to engage students and improve results. MyProgrammingLab consists of a set of programming exercises correlated to specific Pearson CS1/Intro to Programming textbooks. Through practice exercises and immediate, personalized feedback, MyProgrammingLab improves the programming competence of beginning students who often struggle with the basic concepts of programming languages. Note: You are purchasing a standalone product; MyLab(TM) & Mastering(TM) does not come packaged with this content. Students, if interested in purchasing this title with MyLab & Mastering, ask your instructor for the correct package ISBN and Course ID. Instructors, contact your Pearson representative for more information. If you would like to purchase boththe physical text and MyLab & Mastering, search for: 0134520513 / 9780134520513 The Practice of Computing Using Python plus MyProgrammingLab with Pearson eText -- Access Card Package, 3/e Package consists of: 0134381327 / 9780134381329 MyProgrammingLab with Pearson eText -- Access Card Package 0134379764 / 9780134379760 The Practice of Computing Using Python, 3/e

Download or read book The Practitioner s Guide to Graph Data written by Denise Gosnell and published by "O'Reilly Media, Inc.". This book was released on 2020-03-20 with total page 471 pages. Available in PDF, EPUB and Kindle. Book excerpt: Graph data closes the gap between the way humans and computers view the world. While computers rely on static rows and columns of data, people navigate and reason about life through relationships. This practical guide demonstrates how graph data brings these two approaches together. By working with concepts from graph theory, database schema, distributed systems, and data analysis, you’ll arrive at a unique intersection known as graph thinking. Authors Denise Koessler Gosnell and Matthias Broecheler show data engineers, data scientists, and data analysts how to solve complex problems with graph databases. You’ll explore templates for building with graph technology, along with examples that demonstrate how teams think about graph data within an application. Build an example application architecture with relational and graph technologies Use graph technology to build a Customer 360 application, the most popular graph data pattern today Dive into hierarchical data and troubleshoot a new paradigm that comes from working with graph data Find paths in graph data and learn why your trust in different paths motivates and informs your preferences Use collaborative filtering to design a Netflix-inspired recommendation system

Download or read book Ontology based Application Integration written by Heiko Paulheim and published by Springer Science & Business Media. This book was released on 2011-09-08 with total page 276 pages. Available in PDF, EPUB and Kindle. Book excerpt: Ontology-based Application Integration introduces UI-level (User Interface Level) application integration and discusses current problems which can be remedied by using ontologies. It shows a novel approach for applying ontologies in system integration. While ontologies have been used for integration of IT systems on the database and on the business logic layer, integration on the user interface layer is a novel field of research. This book also discusses how end users, not only developers, can benefit from semantic technologies. Ontology-based Application Integration presents the development of a software framework including a detailed ontology about user interfaces and interactions. This includes a running case study of a real world integrated emergency management system. The last section of this book discusses useful features that can be built on top of the framework for improving the user experience with future integrated information systems. Ontology-based Application Integration is designed as a reference book for practitioners and researchers who understand and work with the principles of applying semantic web technologies to a software engineering problem. This book will also make an excellent reference or secondary text book for advanced-level students concentrating on computer science.

Download or read book Learning Expressive Ontologies written by J. Völker and published by IOS Press. This book was released on 2009-06-25 with total page 274 pages. Available in PDF, EPUB and Kindle. Book excerpt: This publication advances the state-of-the-art in ontology learning by presenting a set of novel approaches to the semi-automatic acquisition, refinement and evaluation of logically complex axiomatizations. It has been motivated by the fact that the realization of the semantic web envisioned by Tim Berners-Lee is still hampered by the lack of ontological resources, while at the same time more and more applications of semantic technologies emerge from fast-growing areas such as e-business or life sciences. Such knowledge-intensive applications, requiring large scale reasoning over complex domains of interest, even more than the semantic web depend on the availability of expressive, high-quality axiomatizations. This knowledge acquisition bottleneck could be overcome by approaches to the automatic or semi-automatic construction of ontologies. Hence a huge number of ontology learning tools and frameworks have been developed in recent years, all of them aiming for the automatic or semi-automatic generation of ontologies from various kinds of data. However, both the quality and the expressivity of ontologies that can be acquired by the current state-of-the-art in ontology learning so far have failed to meet the expectations of people who argue in favor of powerful, knowledge-intensive applications based on logical inference. This work therefore takes a first, yet important, step towards the semi-automatic generation and maintenance of expressive ontologies.

Download or read book Ontology Based Development of Industry 4 0 and 5 0 Solutions for Smart Manufacturing and Production written by János Abonyi and published by Springer Nature. This book was released on 2024-01-01 with total page 277 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents a comprehensive framework for developing Industry 4.0 and 5.0 solutions through the use of ontology modeling and graph-based optimization techniques. With effective information management being critical to successful manufacturing processes, this book emphasizes the importance of adequate modeling and systematic analysis of interacting elements in the era of smart manufacturing. The book provides an extensive overview of semantic technologies and their potential to integrate with existing industrial standards, planning, and execution systems to provide efficient data processing and analysis. It also investigates the design of Industry 5.0 solutions and the need for problem-specific descriptions of production processes, operator skills and states, and sensor monitoring in intelligent spaces. The book proposes that ontology-based data can efficiently represent enterprise and manufacturing datasets. The book is divided into two parts: modeling and optimization. The semantic modeling part provides an overview of ontologies and knowledge graphs that can be used to create Industry 4.0 and 5.0 applications, with two detailed applications presented on a reproducible industrial case study. The optimization part of the book focuses on network science-based process optimization and presents various detailed applications, such as graph-based analytics, assembly line balancing, and community detection. The book is based on six key points: the need for horizontal and vertical integration in modern industry; the potential benefits of integrating semantic technologies into ERP and MES systems; the importance of optimization methods in Industry 4.0 and 5.0 concepts; the need to process large amounts of data while ensuring interoperability and re-usability factors; the potential for digital twin models to model smart factories, including big data access; and the need to integrate human factors in CPSs and provide adequate methods to facilitate collaboration and support shop floor workers.

Download or read book Data Technology in Materials Modelling written by Martin Horsch and published by . This book was released on 2021 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: This open access book discusses advances in semantic interoperability for materials modelling, aiming at integrating data obtained from different methods and sources into common frameworks, and facilitating the development of platforms where simulation services in computational molecular engineering can be provided as well as coupled and linked to each other in a standardized and reliable way. The Virtual Materials Marketplace (VIMMP), which is open to all service providers and clients, provides a framework for offering and accessing such services, assisting the uptake of novel modelling and simulation approaches by SMEs, consultants, and industrial R&D end users. Semantic assets presented include the EngMeta metadata schema for research data infrastructures in simulation-based engineering and the collection of ontologies from VIMMP, including the ontology for simulation, modelling, and optimization (OSMO) and the VIMMP software ontology (VISO).

Download or read book Practical RDF written by Shelley Powers and published by "O'Reilly Media, Inc.". This book was released on 2003-07-18 with total page 353 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Resource Description Framework (RDF) is a structure for describing and interchanging metadata on the Web--anything from library catalogs and worldwide directories to bioinformatics, Mozilla internal data structures, and knowledge bases for artificial intelligence projects. RDF provides a consistent framework and syntax for describing and querying data, making it possible to share website descriptions more easily. RDF's capabilities, however, have long been shrouded by its reputation for complexity and a difficult family of specifications. Practical RDF breaks through this reputation with immediate and solvable problems to help you understand, master, and implement RDF solutions.Practical RDF explains RDF from the ground up, providing real-world examples and descriptions of how the technology is being used in applications like Mozilla, FOAF, and Chandler, as well as infrastructure you can use to build your own applications. This book cuts to the heart of the W3C's often obscure specifications, giving you tools to apply RDF successfully in your own projects.The first part of the book focuses on the RDF specifications. After an introduction to RDF, the book covers the RDF specification documents themselves, including RDF Semantics and Concepts and Abstract Model specifications, RDF constructs, and the RDF Schema. The second section focuses on programming language support, and the tools and utilities that allow developers to review, edit, parse, store, and manipulate RDF/XML. Subsequent sections focus on RDF's data roots, programming and framework support, and practical implementation and use of RDF and RDF/XML.If you want to know how to apply RDF to information processing, Practical RDF is for you. Whether your interests lie in large-scale information aggregation and analysis or in smaller-scale projects like weblog syndication, this book will provide you with a solid foundation for working with RDF.