Download or read book Influence of Multivalent Metal Cations on Carbohydrate Separations and Fragmentation Patterns Via Ion Mobility Mass Spectrometry written by Kelsey Anne Morrison and published by . This book was released on 2019 with total page 255 pages. Available in PDF, EPUB and Kindle. Book excerpt: Carbohydrates, oligosaccharides, and glycans occupy a corner of biopolymers that can be overlooked in the shadow of proteins and nucleic acids but are nonetheless essential for the survival of biological organisms. However, unlike other biological macromolecules, known carbohydrate units have largely homogeneous elemental compositions, where species are instead distinguished by variations in stereochemistry and branching patterns. Because this creates a scenario where complex biological samples may contain isomeric mixtures which cannot be differentiated by mass isolation, incorporating ion mobility separations in front of mass spectrometry can provide another dimension of information to distinguish among isomers. Yet another angle for enhancing glycan analysis with ion mobility-mass spectrometry is by leveraging interactions between carbohydrate species and metal cations, which can form adducts that have altered gas-phase structures relative to protonated or deprotonated ions. In some situations, metal adduction exaggerates the differences in effective size among isomers and thereby facilitates isomeric glycan separation in the drift time space.This dissertation is focused on conveying the utility of metal-glycan interactions for improving the ion mobility-mass spectrometric analysis of carbohydrate species while also describing some complementary experiments that were pursued in support of glycan analysis. Of note, ultraviolet photodissociation (UVPD) with metal-enhanced fragmentation and Fourier multiplexing of ion mobility-ion trap mass spectrometry contributed well to isomeric mixture analysis. Divalent metal cations including select transition metals and alkaline earth metals were evaluated for their potential to enhance drift time separations, with transition metals proving particularly useful in this regard for mixture analysis. Preliminary oligosaccharide analysis with divalent metal species found that carbohydrates will form both singly-charged monomeric metal-glycan adducts as well as doubly-charged dimeric metal-glycan adducts where both appear at the same m/z value. These dimers were subsequently scrutinized for the potential to form heterodimeric metal-glycan dimers wherein two different isomeric glycans could form a single dimer during a mixture analysis without mobility separation and form chimeric mass spectra. Through a combination of isotopic labeling and ion mobility-mass spectrometry, it was shown that heterodimeric metal-glycan species will form, and that mobility separation is vital for analyzing glycan mixtures.
Download or read book Assessing Isomeric Heterogeneity of Carbohydrates by Ion Mobility Mass Spectrometry IMMS written by Hongli Li and published by . This book was released on 2013 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: IMMS analysis is fast, sensitive, universal, is capable of resolving isomers and is able to provide unique mobility identities and valuable MS n data on the basis of mobility resolved species including precursor and product ions. Ultimately, IMMS could serve as a novel tool for high throughput identification of glycoprotein.
Download or read book Multidimensional Ion Mobility Spectrometry Coupled to Time of flight Mass Spectrometry written by Stormy Lee Ann Koeniger and published by . This book was released on 2006 with total page 436 pages. Available in PDF, EPUB and Kindle. Book excerpt: For characterization of proteomic mixtures, high-quality primary sequence information is necessary to positively identify the components with database search algorithms. To improve parallel sequencing capabilities with this technology, a new drift tube design has been developed. This design provides high-efficiency fragmentation and improves the transmission efficiency of the fragments to the time-of-flight mass spectrometer. Additionally, the new method of collisional activation utilizes a system of potential at the exit of the drift tube, allowing rapid modulation of the potentials to provide precursor and fragment ion information during the course of a single LC separation.
Download or read book The Sugar Code written by Hans-Joachim Gabius and published by John Wiley & Sons. This book was released on 2011-09-19 with total page 560 pages. Available in PDF, EPUB and Kindle. Book excerpt: A reader friendly overview of the structure and functional relevance of natural glycosylation and its cognate proteins (lectins), this book is also one of the few books to cover their role in health and disease. Edited by one of the pioneering experts in the field and written by a team of renowned researchers this resource is a perfect introduction for all students in life and medical sciences, biochemistry, chemistry and pharmacy. Website: WWW.WILEY-VCH.DE/HOME/THESUGARCODE
Download or read book Bioinformatics for Glycobiology and Glycomics written by Claus-Wilhelm von der Lieth and published by John Wiley & Sons. This book was released on 2009-10-01 with total page 494 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is the first to be dedicated to the bioinformatics of carbohydrates and glycoproteins. It provides an introduction to this emerging field of science both for the experimentalist working in glycobiology and glycomics, and also for the computer scientist looking for background information for the development of highly sophisticated algorithmic approaches. The book provides an overview of the state-of-the-art in the field, with reviews on databases, and the tools in use for analysis, interpretation, and prediction of the structures of complex carbohydrates, and demonstrates the value of bioinformatics for glycobiology. The availability of comprehensive databases and corresponding bioinformatics tools, to access and analyse the large amounts of experimental data relating to the structure of carbohydrates, will be a prerequisite for the success of the large-scale glycomics projects that aim to decipher new, so far unknown, biological functions of glycans. Efficient bioinformatics descriptions and tools can considerably enhance the efficiency of glycomics research, in terms of data quality, analysis and experimental costs. For a complete understanding of the molecular processes in which carbohydrates are involved, such as protein–carbohydrate interactions and the impact of glycosylation on protein function, knowledge of the 3D structure of the carbohydrate, the protein–carbohydrate complex, or the glycoprotein is often indispensable. This book provides a thorough introduction into methods used for conformational analysis of carbohydrates. Key features: Describes bioinformatic approaches to handle carbohydrate-active enzymes and glycosylation. Provides an overview on bioinformatics tools that facilitate analysis of carbohydrate structures. Gives introduction into molecular modelling of carbohydrate 3D structure and carbohydrates contained in the Protein Databank. Assumes only a basic knowledge of biology and bioinformatics.
Download or read book Analysis of Protein Post Translational Modifications by Mass Spectrometry written by John R. Griffiths and published by John Wiley & Sons. This book was released on 2016-11-07 with total page 414 pages. Available in PDF, EPUB and Kindle. Book excerpt: Covers all major modifications, including phosphorylation, glycosylation, acetylation, ubiquitination, sulfonation and and glycation Discussion of the chemistry behind each modification, along with key methods and references Contributions from some of the leading researchers in the field A valuable reference source for all laboratories undertaking proteomics, mass spectrometry and post-translational modification research
Download or read book Toxic Chemical and Biological Agents written by Giovanni Sindona and published by Springer Nature. This book was released on 2020-10-19 with total page 282 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book critically assesses the current state of knowledge on new and important detection technologies, e.g. mass spectrometry, tandem mass spectrometry, biosensor detection and tissue imaging, in connection with toxic chemical and biological agents. In general, the main topics discussed concern the risks and consequences of chemical and biological agents for human health in general, with special emphasis on all biochemical and metabolic pathways including the reproductive system. The exposome, genetic risks and the environment, various health hazard agents, risk assessment, environmental assessment and preparedness, and analysis of sub-lethal effects at the molecular level are also discussed. In closing, the book provides comprehensive information on the diagnosis of exposure, and on health concerns related to toxic chemical and biological agents.
Download or read book Proteomics Sample Preparation written by Jörg von Hagen and published by John Wiley & Sons. This book was released on 2011-08-24 with total page 498 pages. Available in PDF, EPUB and Kindle. Book excerpt: This long-awaited first guide to sample preparation for proteomics studies overcomes a major bottleneck in this fast growing technique within the molecular life sciences. By addressing the topic from three different angles -- sample, method and aim of the study -- this practical reference has something for every proteomics researcher. Following an introduction to the field, the book looks at sample preparation for specific techniques and applications and finishes with a section on the preparation of sample types. For each method described, a summary of the pros and cons is given, as well as step-by-step protocols adaptable to any specific proteome analysis task.
Download or read book Chemistry and Significance of Condensed Tannins written by Richard W. Hemingway and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 539 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book was developed from the proceedings of the first North American Tannin Conference held in Port. Angeles, Washington, August 1988. The objective of the conference was to bring together people with a common interest in condensed tannins and to promote interdisciplinary interactions that will lead to a better understanding of these important substances. Anot. her objective was the publicat. ion of this book because there has not been a monograph devoted to the chemistry and significance of tannins for several decades. The book is organized into sections dealing with the biosynthesis, structure, re actions, complexation with other biopolymers, biological significance, and use of tannins as specialty chemicals. The authors made a special attempt to focus on what we don't know as well as to provide a summary of what we do know in an effort to assist in planning future research. Our thanks go to the authors who so kindly contributed chapters and so pa tiently responded to our requests. We also thank Rylee Geboski and the Conference Assist. ance Staff, College of Forestry, Oregon State University, for their assistance in planning and conducting t. he conference, and Julia Wilson, Debbie Wolfe, Helen Coletka, and Nancy Greene of the Southern Forest Experiment Station, Pineville, Louisiana, who typed the chapt. ers. Linda Chalker-Scott was especially helpful in assisting us wit. h editing. Dick Hemingway is indebted t. o the staff of the Alexandria Forest.
Download or read book Treatment of Micropollutants in Water and Wastewater written by Jurate Virkutyte and published by IWA Publishing. This book was released on 2010-08-14 with total page 505 pages. Available in PDF, EPUB and Kindle. Book excerpt: Over the last few years there has been a growing concern over the increasing concentration of micropollutants originating from a great variety of sources including pharmaceutical, chemical engineering and personal care product industries in rivers, lakes, soil and groundwater. As most of the micropollutants are polar and persistent compounds, they are only partially or not at all removed from wastewater and thus can enter the environment posing a great risk to the biota. It is hypothesized that wastewater is one of the most important point sources for micropollutants. Treatment of Micropollutants in Water and Wastewater gives a comprehensive overview of modern analytical methods and will summarize novel single and hybrid methods to remove continuously emerging contaminants - micropollutants from the aqueous phase. New trends (e.g. sensor technology, nanotechnology and hybrid treatment technologies) are described in detail. The book is very timely because the new techniques are still in the development phase and have to be realized not only in the laboratory but also on a larger scale. The content of the book is divided into chapters that present current descriptive and analytical methods that are available to detect and measure micropollutants together with detailed information on various chemical, biological and physicochemical methods that have evolved over the last few decades. Treatment of Micropollutants in Water and Wastewater will also enable readers to make well informed choices through providing an understanding of why and how micropollutants must be removed from water sources, and what are the most appropriate and available techniques for providing a cost and technologically effective and sustainable solutions for reaching the goal of micropollutant-free water and wastewater. The book will be suitable for water and wastewater professionals as well for students and researchers in civil engineering, environmental engineering and process engineering fields.
Download or read book Medical Laboratory Science Review written by Robert R Harr and published by F.A. Davis. This book was released on 2012-10-11 with total page 601 pages. Available in PDF, EPUB and Kindle. Book excerpt: Use this comprehensive resource to gain the theoretical and practical knowledge you need to be prepared for classroom tests and certification and licensure examinations.
Download or read book Differential Ion Mobility Spectrometry written by Alexandre A. Shvartsburg and published by CRC Press. This book was released on 2008-12-24 with total page 322 pages. Available in PDF, EPUB and Kindle. Book excerpt: Over the last decade, scientific and engineering interests have been shifting from conventional ion mobility spectrometry (IMS) to field asymmetric waveform ion mobility spectrometry (FAIMS). Differential Ion Mobility Spectrometry: Nonlinear Ion Transport and Fundamentals of FAIMS explores this new analytical technology that separates and characterizes ions by the difference between their mobility in gases at high and low electric fields. It also covers the novel topics of higher-order differential IMS and IMS with alignment of dipole direction. The book relates the fundamentals of FAIMS and other nonlinear IMS methods to the physics of gas-phase ion transport. It begins with the basics of ion diffusion and mobility in gases, covering the main attributes of conventional IMS that are relevant to all IMS approaches. Building on this foundation, the author reviews diverse high-field transport phenomena that underlie differential IMS. He discusses the conceptual implementation and first-principles optimization of FAIMS as a filtering technique, emphasizing the dependence of FAIMS performance metrics on instrumental parameters and properties of ion species. He also explores ion reactions in FAIMS caused by field heating and the effects of inhomogeneous electric field in curved FAIMS gaps. Written by an accomplished scientist in the field, this state-of-the-art book supplies the foundation to understand the new technology of nonlinear IMS methods.
Download or read book Allelopathy written by Manuel J. Reigosa and published by Springer Science & Business Media. This book was released on 2006-02-28 with total page 635 pages. Available in PDF, EPUB and Kindle. Book excerpt: There are many good books in the market dealing with the subject of allelopathy. When we designed the outline of this new book, we thought that it should include as many different points of view as possible, although in an integrated general scheme. Allelopathy can be viewed from different of perspectives, ranging from the molecular to the ecosystem level, and including molecular biology, plant biochemistry, plant physiology, plant ecophysiology and ecology, with information coming also from the organic chemistry, soil sciences, microbiology and many other scientific disciplines. This book was designed to include a complete perspective of allelopathic process. The book is divided into seven major sections. The first chapter explores the international development of allelopathy as a science and next section deals with methodological aspects and it explores potential limitations of actual research. Third section is devoted to physiological aspects of allelopathy. Different specialists wrote about photosynthesis, cell cycle, detoxification processes, abiotic and biotic stress, plant secondary metabolites and respiration related to allelopathy. Chapters 13 through 16 are collectively devoted to various aspects of plant ecophysiology on a variety of levels: microorganisms, soil system and weed germination. Fundamental ecology approaches using both experimental observations and theoretical analysis of allelopathy are described in chapters 16 and 17. Those chapters deal with the possible evolutionary forces that have shaped particular strategies. In the section named “allelopathy in different environments”, authors primarily center on marine, aquatic, forest and agro ecosystems. Last section includes chapters addressing application of the knowledge of allelopathy.
Download or read book Polysaccharide Based Graft Copolymers written by Susheel Kalia and published by Springer Science & Business Media. This book was released on 2013-05-23 with total page 358 pages. Available in PDF, EPUB and Kindle. Book excerpt: Renowned experts give all essential aspects of the techniques and applications of graft copolymers based on polysaccharides. Polysaccharides are the most abundant natural organic materials and polysaccharide based graft copolymers are of great importance and widely used in various fields. Natural polysaccharides have recently received more attention due to their advantages over synthetic polymers by being non-toxic, biodegradable and available at low cost. Modification of polysaccharides through graft copolymerization improves the properties of polysaccharides. Grafting is known to improve the characteristic properties of the backbones. Such properties include water repellency, thermal stability, flame resistance, dye-ability and resistance towards acid-base attack and abrasion. Polysaccharides and their graft copolymers find extensive applications in diversified fields. Applications of modified polysaccharides include drug delivery devices, controlled release of fungicides, selective water absorption from oil-water emulsions, purification of water etc.
Download or read book The Crustacean Nervous System written by Konrad Wiese and published by Springer Science & Business Media. This book was released on 2002 with total page 652 pages. Available in PDF, EPUB and Kindle. Book excerpt: This unique selection of reviews summarizes current knowledge in all major fields of crustacean neurobiology and all levels of their CNS organization, using lobster and crayfish. It not only imparts theoretical knowledge but also describes all available contemporary and advanced techniques, such as patch clamp recordings, microelectrode techniques, immunocytochemistry, and all methods of molecular genetics to identify cellular pathways of protein synthesis and peptidergic control. In summary, it is a comprehensive account of the research achievements in one of the major nervous systems besides the mammalian CNS.
Download or read book Soil Pollution written by Ibrahim Mirsal and published by Springer Science & Business Media. This book was released on 2013-04-17 with total page 270 pages. Available in PDF, EPUB and Kindle. Book excerpt: This graduate-level text and reference work is unique among the soil literature. It deals with the interdisciplinary fields of soil pollution and remediation. It starts off with a thorough and comprehensible introduction to the relevant fundamentals of mineralogy, chemistry, and soil properties. Readers are thus well prepared to understand the biochemical aspects of soil remediation then presented. The book’s holistic approach and narrative style are complemented by numerous and detailed illustrations. Soil pollution is an asset not only to graduate students and instructors, but also to professionals from the environmental and agricultural sciences, as it provides an integrated overview of previously separately treated material.
Download or read book The Biophysics of Cell Membranes written by Richard M. Epand and published by Springer. This book was released on 2017-09-25 with total page 224 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume focuses on the modulation of biological membranes by specific biophysical properties. The readers are introduced to emerging biophysical approaches that mimick specific states (like membrane lipid asymmetry, membrane curvature, lipid flip-flop, lipid phase separation) that are relevant to the functioning of biological membranes. The first chapter describes innovative methods to mimic the prevailing asymmetry in biological membranes by forming asymmetrical membranes made of monolayers with different compositions. One of the chapters illustrates how physical parameters, like curvature and elasticity, can affect and modulate the interactions between lipids and proteins. This volume also describes the sensitivity of certain ion channels to mechanical forces and it presents an analysis of how cell shape is determined by both the cytoskeleton and the lipid domains in the membrane. The last chapter provides evidence that liposomes can be used as a minimal cellular model to reconstitute processes related to the origin of life. Each topic covered in this volume is presented by leading experts in the field who are able to present clear, authoritative and up-to-date reviews. The novelty of the methods proposed and their potential for a deeper molecular description of membrane functioning are particularly relevant experts in the areas of biochemistry, biophysics and cell biology, while also presenting clear and thorough introductions, making the material suitable for students in these fields as well.
