Download or read book The Rubber Tree Genome written by Minami Matsui and published by Springer Nature. This book was released on 2020-04-18 with total page 191 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents the first comprehensive compilation of genome research on the Hevea brasiliensis rubber tree. The genomes of Hevea tree clones (cultivars) are described by three major international groups. Chapters on omics-driven investigations address a broad range of topics including genome annotation and utilisation, transcriptome and gene family analysis, genetic mapping, metabolic pathways in latex and molecular breeding. Additionally, an overview of fundamental rubber biology, especially on laticifers, provides a historical background that is relevant to rubber genome analysis. The book concludes with several perspectives on the future needs of rubber investigations and prospects of rubber genomics. Given the scope of topics, this book will appeal to researchers and university students working in genomics and biotechnology of the rubber tree, and to rubber breeders with an interest in non-conventional approaches to trait analysis, selection and breeding.
Download or read book Biology of Hevea Rubber written by P.M. Priyadarshan and published by Springer. This book was released on 2017-06-09 with total page 251 pages. Available in PDF, EPUB and Kindle. Book excerpt: In the second edition of this book, the origin, upkeep and latex harvest from the Hevea rubber tree are dealt with succinctly. New chapters have been included on Propagation Systems and Genetic Resources. The importance of Heterozygosis and Breeding is a new theme for the section on Breeding. A new chapter on Genomics and Molecular Breeding that focuses on the latest advancements on gene mapping, marker assisted selection and stimulation has been added. Lastly, ‘textboxes’ that highlight points and topics of significant interest are included in the new addition. Natural rubber has been an essential commodity not only for the tire industry but also for more than 50,000 products that holds elasticity as an attribute. The prime source of natural rubber worldwide is Hevea brasiliensis. Hevea rubber tree is an excellent example of how a soil-tree-atmosphere system can work in tandem. The retrieval of rubber through ‘injuring’ the tree on alternate days or once in three days or once in seven days, is indeed a unique arrangement followed universally that ensures income to the planter almost throughout the year. Every molecule of rubber is the end result of meticulous biochemical changes. Therefore the biology of Hevea rubber tree itself is a subject that aggregates science and technology for the realization of its industrial utility.
Download or read book The Tangled Tree written by David Quammen and published by Simon & Schuster. This book was released on 2019-08-06 with total page 480 pages. Available in PDF, EPUB and Kindle. Book excerpt: In this New York Times bestseller and longlist nominee for the National Book Award, “our greatest living chronicler of the natural world” (The New York Times), David Quammen explains how recent discoveries in molecular biology affect our understanding of evolution and life’s history. In the mid-1970s, scientists began using DNA sequences to reexamine the history of all life. Perhaps the most startling discovery to come out of this new field—the study of life’s diversity and relatedness at the molecular level—is horizontal gene transfer (HGT), or the movement of genes across species lines. It turns out that HGT has been widespread and important; we now know that roughly eight percent of the human genome arrived sideways by viral infection—a type of HGT. In The Tangled Tree, “the grandest tale in biology….David Quammen presents the science—and the scientists involved—with patience, candor, and flair” (Nature). We learn about the major players, such as Carl Woese, the most important little-known biologist of the twentieth century; Lynn Margulis, the notorious maverick whose wild ideas about “mosaic” creatures proved to be true; and Tsutomu Wantanabe, who discovered that the scourge of antibiotic-resistant bacteria is a direct result of horizontal gene transfer, bringing the deep study of genome histories to bear on a global crisis in public health. “David Quammen proves to be an immensely well-informed guide to a complex story” (The Wall Street Journal). In The Tangled Tree, he explains how molecular studies of evolution have brought startling recognitions about the tangled tree of life—including where we humans fit upon it. Thanks to new technologies, we now have the ability to alter even our genetic composition—through sideways insertions, as nature has long been doing. “The Tangled Tree is a source of wonder….Quammen has written a deep and daring intellectual adventure” (The Boston Globe).
Download or read book Plant Genomes written by Jean-Nicolas Volff and published by Karger Medical and Scientific Publishers. This book was released on 2008-01-01 with total page 155 pages. Available in PDF, EPUB and Kindle. Book excerpt: Recent major advances in the field of comparative genomics and cytogenomics of plants, particularly associated with the completion of ambitious genome projects, have uncovered astonishing facets of the architecture and evolutionary history of plant genomes. The aim of this book was to review these recent developments as well as their implications in our understanding of the mechanisms which drive plant diversity. New insights into the evolution of gene functions, gene families and genome size are presented, with particular emphasis on the evolutionary impact of polyploidization and transposable elements. Knowledge on the structure and evolution of plant sex chromosomes, centromeres and microRNAs is reviewed and updated. Taken together, the contributions by internationally recognized experts present a panoramic overview of the structural features and evolutionary dynamics of plant genomes.This volume of Genome Dynamics will provide researchers, teachers and students in the fields of biology and agronomy with a valuable source of current knowledge on plant genomes.
Download or read book Plant Genomics written by Ibrokhim Y. Abdurakhmonov and published by BoD – Books on Demand. This book was released on 2016-07-14 with total page 312 pages. Available in PDF, EPUB and Kindle. Book excerpt: Plant genomics aims to sequence, characterize, and study the genetic compositions, structures, organizations, functions, and interactions/networks of an entire plant genome. Its development and advances are tightly interconnected with proteomics, metabolomics, metagenomics, transgenomics, genomic selection, bioinformatics, epigenomics, phenomics, system biology, modern instrumentation, and robotics sciences. Plant genomics has significantly advanced over the past three decades in the land of inexpensive, high-throughput sequencing technologies and fully sequenced over 100 plant genomes. These advances have broad implications in every aspect of plant biology and breeding, powered with novel genomic selection and manipulation tools while generating many grand challenges and tasks ahead. This Plant genomics provides some updated discussions on current advances, challenges, and future perspectives of plant genome studies and applications.
Download or read book The Agronomy and Economy of Important Tree Crops of the Developing World written by K.P. Prabhakaran Nair and published by Elsevier. This book was released on 2010-04-22 with total page 366 pages. Available in PDF, EPUB and Kindle. Book excerpt: Major tree crops contribute substantially to the economy of many developing countries on the Asian, African and Latin American continents. For example, coffee is the main revenue earner for Kenya. This book provides a comprehensive review of the agronomy, botany, taxonomy, genetics, chemistry, economics, and future global prospects of a range of crops that have great food, industrial and economic value such as cocoa, coffee, cashew, oil palm and natural rubber. Discusses the major tree crops of great economic value to the developing world The author is an eminent scientist who has won numerous awards for his work in this area
Download or read book Breeding Plantation Tree Crops Tropical Species written by Shri Mohan Jain and published by Springer Science & Business Media. This book was released on 2008-10-08 with total page 654 pages. Available in PDF, EPUB and Kindle. Book excerpt: Tree species are indispensable to support human life. Due to their long life cycle and environmental sensitivity, breeding trees to suit day-to-day human needs is a formidable challenge. Whether they are edible or industrial crops, improving yield under optimal, sub-optimal and marginal areas calls for uni?ed efforts from the s- entistsaroundtheworld. Whiletheuniquenessofcoconutaskalpavriksha(Sanskr- meaning tree-of-life) marks its presence in every continent from Far East to South America, tree crops like cocoa, oil palm, rubber, apple, peach, grapes and walnut prove their environmental sensitivity towards tropical, sub-tropical and temperate climates. Desert climate is quintessential for date palm. Thus, from soft drinks to breweries to beverages to oil to tyres, the value addition offers a spectrum of pr- ucts to human kind, enriched with nutritional, environmental, ?nancial, social and trade related attributes. Taxonomically, tree crops do not con?ne to a few families, but spread across a section of genera, an attribute so unique that contributes immensely to genetic biodiversity even while cultivated at the commercial scale. Many of these species in?uence other ?ora to nurture in their vicinity, thus ensuring their integrity in p- serving the genetic biodiversity. While wheat, rice, maize, barley, soybean, cassava andbananamakeup themajorfoodstaples,manyfruittreespeciescontributegreatly tonutritionalenrichment inhumandiet. Theediblepartofthesespeciesisthesource of several nutrients that makes additives for the daily diet of humans, for example, vitamins, sugars, aromas and ?avour compounds, and raw material for food proce- ing industries. Tree crops face an array of agronomic and horticultural problems in propagation, yield, appearance, quality, diseases and pest control, abiotic stresses and poor shelf-life.
Download or read book The Fungal Kingdom written by Joseph Heitman and published by John Wiley & Sons. This book was released on 2020-07-10 with total page 1136 pages. Available in PDF, EPUB and Kindle. Book excerpt: Fungi research and knowledge grew rapidly following recent advances in genetics and genomics. This book synthesizes new knowledge with existing information to stimulate new scientific questions and propel fungal scientists on to the next stages of research. This book is a comprehensive guide on fungi, environmental sensing, genetics, genomics, interactions with microbes, plants, insects, and humans, technological applications, and natural product development.
Download or read book The Globe Artichoke Genome written by Ezio Portis and published by Springer. This book was released on 2019-06-08 with total page 233 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents the latest information on the genetics and genomics of the globe artichoke. It focuses on the latest findings, tools and strategies employed in genome sequencing, physical map development and QTL analyses, as well as genomic resources. The re-sequencing of four globe artichoke genotypes, representative of the core varietal types in cultivation, as well as the genotype of cultivated cardoon, has recently been completed. Here, the five genomes are reconstructed at the chromosome scale and annotated. Moreover, functional SNP analyses highlight numerous genetic variants, which represent key tools for dissecting the path from sequence variation to phenotype, as well as for designing effective diagnostic markers. The wealth of information provided here offers a valuable asset for scientists, plant breeders and students alike.
Download or read book Physiology of Rubber Tree Latex written by J. d'Auzac and published by CRC Press. This book was released on 2018-01-18 with total page 920 pages. Available in PDF, EPUB and Kindle. Book excerpt: The present work is based on the study of the laticiferous system in Hevea. It therefore covers anatomical, histological, and cytological research on laticifers and latex, together with biochemical and enzymological investigation of latex in vitro. Integration of all these studies led to the investigation of the physiology of the laticiferous function. The work described includes the most important results obtained over a period of nearly a century and the most recent work which has yet to be published.
Download or read book Physiology of Woody Plants written by Stephen G. Pallardy and published by Academic Press. This book was released on 2010-07-20 with total page 464 pages. Available in PDF, EPUB and Kindle. Book excerpt: Woody plants such as trees have a significant economic and climatic influence on global economies and ecologies. This completely revised classic book is an up-to-date synthesis of the intensive research devoted to woody plants published in the second edition, with additional important aspects from the authors' previous book, Growth Control in Woody Plants. Intended primarily as a reference for researchers, the interdisciplinary nature of the book makes it useful to a broad range of scientists and researchers from agroforesters, agronomists, and arborists to plant pathologists and soil scientists. This third edition provides crutial updates to many chapters, including: responses of plants to elevated CO2; the process and regulation of cambial growth; photoinhibition and photoprotection of photosynthesis; nitrogen metabolism and internal recycling, and more. Revised chapters focus on emerging discoveries of the patterns and processes of woody plant physiology. * The only book to provide recommendations for the use of specific management practices and experimental procedures and equipment *Updated coverage of nearly all topics of interest to woody plant physiologists * Extensive revisions of chapters relating to key processes in growth, photosynthesis, and water relations * More than 500 new references * Examples of molecular-level evidence incorporated in discussion of the role of expansion proteins in plant growth; mechanism of ATP production by coupling factor in photosynthesis; the role of cellulose synthase in cell wall construction; structure-function relationships for aquaporin proteins
Download or read book Genomics of Tree Crops written by R.J. Schnell and published by Springer Science & Business Media. This book was released on 2012-08-01 with total page 377 pages. Available in PDF, EPUB and Kindle. Book excerpt: Trees that are indispensably supportive to human life pose a formidable challenge to breed them to suit to human needs. From soft drinks to breweries to beverages to oil to tires, the value added products from trees give a spectrum of products to human kind. While attempts to tap these resources through conventional breeding are underway, the quick and elegant way of manipulating the genetic systems at the genome level is an essential chapter of modern science. Books featuring genomics of tree crops are few, and genomics is such a science that changes rapidly. Genomics of Tree Crops is an earnest attempt towards compiling genomics of tree crops. Plant genomics has made monumental strides in the last decade providing insights into intra-genomic phenomena such as heterosis, epistasis, pleiotropy and other interactions between loci and alleles within the genome. In contrast, the investigation of the roles and functions of single genes is a primary focus of molecular biology and is a common topic of modern genetic research. A genome is the sum total of all of an individual organism's genes. Thus, genomics is the study of all the genes of a cell, or tissue, at the DNA (genotype), mRNA (transcriptome), or protein (proteome) levels. The complete sequencing of the three billion base pair human genome with 25,000 genes identified and the invention of DNA microarrays ushered in a new era in the science of genomics leading to explosive advancements in oncology diagnostics. This impetus into the genomics era lead the way toward advances in plant genomics which started with Arabidopsis thaliana and went through an array of crops such as rice, maize, papaya, various cereals and legumes, with pigeon pea added to the list towards the end of 2011. Trees, on the other hand, are the least attended taxa with regard to genomic research. Some of the areas that attained attention of the scientists are: DNA sequencing, bioinformatics, genomics of flowering, gene flow, spatial structure, local adaptation and assisted migration in trees, transformation of fruit trees, genomics of tropical and temperate fruit trees, genomics of Hevea rubber, genomics of papaya and genomics of palms. Genomics of Tree Crops compiles this information with chapters authored by experts on these crops.
Download or read book HiC Pro an Optimized and Flexible Pipeline for Hi C Data Processing written by Oldenburg Oldenburg Press and published by . This book was released on 2016-01-29 with total page 40 pages. Available in PDF, EPUB and Kindle. Book excerpt: HiC-Pro is an optimized and flexible pipeline for processing Hi-C data from raw reads to normalized contact maps. HiC-Pro maps reads, detects valid ligation products, performs quality controls and generates intra- and inter-chromosomal contact maps. It includes a fast implementation of the iterative correction method and is based on a memory-efficient data format for Hi-C contact maps. In addition, HiC-Pro can use phased genotype data to build allele-specific contact maps. We applied HiC-Pro to different Hi-C datasets, demonstrating its ability to easily process large data in a reasonable time. Source code and documentation are available at http://github.com/nservant/HiC-Pro.
Download or read book The Biology of Reaction Wood written by Barry Gardiner and published by Springer Science & Business Media. This book was released on 2014-01-08 with total page 281 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book is a fundamental reference source on reaction wood for wood scientists and technologists, plant biologists, silviculturists, forest ecologists, and anyone involved in the growing of trees and the processing of wood. It brings together our current understanding of all aspects of reaction wood, and is the first book to discuss both compression wood and tension wood. Trees produce reaction wood to maintain the vertical orientation of their stems and the optimum angle of each branch. They achieve this by laying down fibre cell walls in which differences in physical and chemical structure from those of normal fibres are expressed as differential stresses across the stem or branch. This process, while of obvious value for the survival of the tree, causes serious problems for the utilisation of timber. Timber derived from trees containing significant amounts of reaction wood is subject to dimensional instability on drying, causing twisting, bending and splitting. It is also difficult to work as timber, and for the pulp and paper industry the cost of removing the increased amount of lignin in compression wood is substantial. This has both practical and economic consequences for industry. Understanding the factors controlling reaction wood formation and its effect on wood structure is therefore fundamental to our understanding of the adaptation of trees to their environment and to the sustainable use of wood. The topics covered include: -Morphology, anatomy and ultrastructure of reaction wood -Cell-wall polymers in reaction wood and their biosynthesis -Changes in tree proteomes during reaction wood formation -The biomechanical action and biological functions of reaction wood - Physical and mechanical properties of reaction wood from the scale of cell walls to planks -The detection and characterisation of compression wood -Effects of reaction wood on the performance of wood and wood-based products - Commercial implications of reaction wood and the influence of forest management on its formation
Download or read book Highly Contiguous Plant Genome Assembly and Transcriptional Regulation written by Kai-Hua Jia and published by Frontiers Media SA. This book was released on 2024-03-01 with total page 133 pages. Available in PDF, EPUB and Kindle. Book excerpt: Highly contiguous reference genome sequences are a prerequisite for genomics research and for the optimal utilization of plant species. However, whole-genome duplication events and subsequent chromosomal rearrangements and losses shape the complex features and extensive diversity of plant genomes, and hinder their highly contiguous assembly. With the advent of single-molecule, long-read sequencing technologies, such as PacBio High-Fidelity (HiFi) and Oxford Nanopore Technologies (ONT), as well as Bionano genomics and high-throughput chromatin conformation capture (Hi-C), many highly complex chromosome-level genomes have been revealed, even with phased haplotypes. These advanced sequencing technologies, coupled with improvements in assembly methods, have greatly improved the quality of the assembled genomes. Transcriptomics and metabolomics are playing an increasingly important role in research into genetic variation and functional genes, and enable their combination with other omics studies. For example, in studies of plant stress resistance, the application of transcriptomics and metabolomics technologies allows comprehensive and dynamic detection of the spatial and temporal changes in plant genes/metabolite expression under stress, enabling functional genes to be “mined” and the regulatory mechanism underlying stress responses to be analyzed, providing a molecular genetic basis for the breeding of stress-resistant varieties.
Download or read book Agrobacterium Protocols written by Kan Wang and published by Springer Science & Business Media. This book was released on 2008-02-04 with total page 474 pages. Available in PDF, EPUB and Kindle. Book excerpt: Agrobacterium tumefaciens is a soil bacterium that for more than a century has been known as a pathogen causing the plant crown gall disease. Unlike many other pathogens, Agrobacterium has the ability to deliver DNA to plant cells and permanently alter the plant genome. The discovery of this unique feature 30 years ago has provided plant scientists with a powerful tool to genetically transform plants for both basic research purposes and for agricultural development. Compared to physical transformation methods such as particle bomba- ment or electroporation, Agrobacterium-mediated DNA delivery has a number of advantages. One of the features is its propensity to generate a single or a low copy number of integrated transgenes with defined ends. Integration of a single transgene copy into the plant genome is less likely to trigger “gene silencing” often associated with multiple gene insertions. When the first edition of Agrobacterium Protocols was published in 1995, only a handful of plants could be routinely transformed using Agrobacterium. Agrobacterium-mediated transformation is now commonly used to introduce DNA into many plant species, including monocotyledon crop species that were previously considered non-hosts for Agrobacterium. Most remarkable are recent developments indicating that Agrobacterium can also be used to deliver DNA to non-plant species including bacteria, fungi, and even mammalian cells.
Download or read book The Flowering of Apomixis written by Yves Savidan and published by CIMMYT. This book was released on 2001 with total page 260 pages. Available in PDF, EPUB and Kindle. Book excerpt:
