Download or read book Testing Character Evolution Models in Phylogenetic Paleobiology written by April Wright and published by Cambridge University Press. This book was released on 2021-08-26 with total page 80 pages. Available in PDF, EPUB and Kindle. Book excerpt: Macroevolutionary inference has historically been treated as a two-step process, involving the inference of a tree, and then inference of a macroevolutionary model using that tree. Newer models blend the two steps. These methods make more complete use of fossils than the previous generation of Bayesian phylogenetic models. They also involve many more parameters than prior models, including parameters about which empiricists may have little intuition. In this Element, we set forth a framework for fitting complex, hierarchical models. The authors ultimately fit and use a joint tree and diversification model to estimate a dated phylogeny of the Cincta (Echinodermata), a morphologically distinct group of Cambrian echinoderms that lack the fivefold radial symmetry characteristic of extant members of the phylum. Although the phylogeny of cinctans remains poorly supported in places, this Element shows how models of character change and diversification contribute to understanding patterns of phylogenetic relatedness and testing macroevolutionary hypotheses.
Download or read book Analysis of Phylogenetics and Evolution with R written by Emmanuel Paradis and published by Springer Science & Business Media. This book was released on 2006-11-25 with total page 221 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book integrates a wide variety of data analysis methods into a single and flexible interface: the R language. The book starts with a presentation of different R packages and gives a short introduction to R for phylogeneticists unfamiliar with this language. The basic phylogenetic topics are covered. The chapter on tree drawing uses R's powerful graphical environment. A section deals with the analysis of diversification with phylogenies, one of the author's favorite research topics. The last chapter is devoted to the development of phylogenetic methods with R and interfaces with other languages (C and C++). Some exercises conclude these chapters.
Download or read book Mammalian Evolutionary Morphology written by Eric J. Sargis and published by Springer Science & Business Media. This book was released on 2008-05-21 with total page 453 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book celebrates the contributions of Dr. Frederick S. Szalay to the field of Mammalian Evolutionary Morphology. Professor Szalay is a strong advocate for biologically and evolutionarily meaningful character analysis. He has published about 200 articles, six monographs, and six books on this subject. This book features subjects such as the evolution and adaptation of mammals and provides up-to-date articles on the evolutionary morphology of a wide range of mammalian groups.
Download or read book Phylogenetic Comparative Methods in R written by Liam J. Revell and published by Princeton University Press. This book was released on 2022-07-12 with total page 441 pages. Available in PDF, EPUB and Kindle. Book excerpt: An authoritative introduction to the latest comparative methods in evolutionary biology Phylogenetic comparative methods are a suite of statistical approaches that enable biologists to analyze and better understand the evolutionary tree of life, and shed vital new light on patterns of divergence and common ancestry among all species on Earth. This textbook shows how to carry out phylogenetic comparative analyses in the R statistical computing environment. Liam Revell and Luke Harmon provide an incisive conceptual overview of each method along with worked examples using real data and challenge problems that encourage students to learn by doing. By working through this book, students will gain a solid foundation in these methods and develop the skills they need to interpret patterns in the tree of life. Covers every major method of modern phylogenetic comparative analysis in R Explains the basics of R and discusses topics such as trait evolution, diversification, trait-dependent diversification, biogeography, and visualization Features a wealth of exercises and challenge problems Serves as an invaluable resource for students and researchers, with applications in ecology, evolution, anthropology, disease transmission, conservation biology, and a host of other areas Written by two of today’s leading developers of phylogenetic comparative methods
Download or read book Phylogenetic Comparative Methods A User s Guide for Paleontologists written by Laura C. Soul and published by Cambridge University Press. This book was released on 2021-05-27 with total page 77 pages. Available in PDF, EPUB and Kindle. Book excerpt: Recent advances in statistical approaches called phylogenetic comparative methods (PCMs) have provided paleontologists with a powerful set of analytical tools for investigating evolutionary tempo and mode in fossil lineages. However, attempts to integrate PCMs with fossil data often present workers with practical challenges or unfamiliar literature. This Element presents guides to the theory behind and the application of PCMs with fossil taxa. Based on an empirical dataset of Paleozoic crinoids, example analyses are presented to illustrate common applications of PCMs to fossil data, including investigating patterns of correlated trait evolution and macroevolutionary models of morphological change. The authors emphasize the importance of accounting for sources of uncertainty and discuss how to evaluate model fit and adequacy. Finally, the authors discuss several promising methods for modeling heterogeneous evolutionary dynamics with fossil phylogenies. Integrating phylogeny-based approaches with the fossil record provides a rigorous, quantitative perspective on understanding key patterns in the history of life.
Download or read book Modern Phylogenetic Comparative Methods and Their Application in Evolutionary Biology written by László Zsolt Garamszegi and published by Springer. This book was released on 2014-07-29 with total page 553 pages. Available in PDF, EPUB and Kindle. Book excerpt: Phylogenetic comparative approaches are powerful analytical tools for making evolutionary inferences from interspecific data and phylogenies. The phylogenetic toolkit available to evolutionary biologists is currently growing at an incredible speed, but most methodological papers are published in the specialized statistical literature and many are incomprehensible for the user community. This textbook provides an overview of several newly developed phylogenetic comparative methods that allow to investigate a broad array of questions on how phenotypic characters evolve along the branches of phylogeny and how such mechanisms shape complex animal communities and interspecific interactions. The individual chapters were written by the leading experts in the field and using a language that is accessible for practicing evolutionary biologists. The authors carefully explain the philosophy behind different methodologies and provide pointers – mostly using a dynamically developing online interface – on how these methods can be implemented in practice. These “conceptual” and “practical” materials are essential for expanding the qualification of both students and scientists, but also offer a valuable resource for educators. Another value of the book are the accompanying online resources (available at: http://www.mpcm-evolution.com), where the authors post and permanently update practical materials to help embed methods into practice.
Download or read book Computational Molecular Evolution written by Ziheng Yang and published by Oxford University Press, USA. This book was released on 2006-10-05 with total page 374 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book describes the models, methods and algorithms that are most useful for analysing the ever-increasing supply of molecular sequence data, with a view to furthering our understanding of the evolution of genes and genomes.
Download or read book Encyclopedia of Human Evolution and Prehistory written by Eric Delson and published by Routledge. This book was released on 2004-11-23 with total page 780 pages. Available in PDF, EPUB and Kindle. Book excerpt: Praise for the first edition: "The most up-to-date and wide-ranging encyclopedia work on human evolution available."--American Reference Books Annual "For student, researcher, and teacher...the most complete source of basic information on the subject."--Nature "A comprehensive and authoritative source, filling a unique niche...essential to academic libraries...important for large public libraries." --Booklist/RBB
Download or read book A Review and Evaluation of Homology Hypotheses in Echinoderm Paleobiology written by Colin D. Sumrall and published by Cambridge University Press. This book was released on 2023-04-13 with total page 91 pages. Available in PDF, EPUB and Kindle. Book excerpt: The extraxial-axial theory (EAT) and universal elemental homology (UEH) are often portrayed as mutually exclusive hypotheses of homology within pentaradiate Echinodermata. EAT describes homology upon the echinoderm bauplan, interpreted through early post-metamorphic growth and growth zones, dividing it into axial regions generally associated with elements of the ambulacral system and extraxial regions that are not. UEH describes the detailed construction of the axial skeleton, dividing it into homologous plates and plate series based on symmetry, early growth, and function. These hypotheses are not in conflict; the latter is rooted in refinement of the former. Some interpretive differences arise because many of the morphologies described from eleutherozoan development are difficult to reconcile with Paleozoic forms. Conversely, many elements described for Paleozoic taxa by UEH, such as the peristomial border plates, are absent in eleutherozoans. This Element recommends these two hypotheses be used together to generate a better understanding of homology across Echinodermata.
Download or read book Phylogenetic Comparative Methods in R written by Liam J. Revell and published by Princeton University Press. This book was released on 2022-09-06 with total page 440 pages. Available in PDF, EPUB and Kindle. Book excerpt: An authoritative introduction to the latest comparative methods in evolutionary biology Phylogenetic comparative methods are a suite of statistical approaches that enable biologists to analyze and better understand the evolutionary tree of life, and shed vital new light on patterns of divergence and common ancestry among all species on Earth. This textbook shows how to carry out phylogenetic comparative analyses in the R statistical computing environment. Liam Revell and Luke Harmon provide an incisive conceptual overview of each method along with worked examples using real data and challenge problems that encourage students to learn by doing. By working through this book, students will gain a solid foundation in these methods and develop the skills they need to interpret patterns in the tree of life. Covers every major method of modern phylogenetic comparative analysis in RExplains the basics of R and discusses topics such as trait evolution, diversification, trait-dependent diversification, biogeography, and visualizationFeatures a wealth of exercises and challenge problemsServes as an invaluable resource for students and researchers, with applications in ecology, evolution, anthropology, disease transmission, conservation biology, and a host of other areasWritten by two of today’s leading developers of phylogenetic comparative methods
Download or read book Carnivoran Evolution written by Anjali Goswami and published by Cambridge University Press. This book was released on 2010-07-29 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Members of the mammalian clade Carnivora have invaded nearly every continent and ocean, evolving into bamboo-eating pandas, clam-eating walruses and of course, flesh-eating sabre-toothed cats. With this ecological, morphological and taxonomic diversity and a fossil record spanning over sixty million years, Carnivora has proven to be a model clade for addressing questions of broad evolutionary significance. This volume brings together top international scientists with contributions that focus on current advances in our understanding of carnivoran relationships, ecomorphology and macroevolutionary patterns. Topics range from the palaeoecology of the earliest fossil carnivorans to the influences of competition and constraint on diversity and biogeographic distributions. Several studies address ecomorphological convergences among carnivorans and other mammals with morphometric and Finite Element analyses, while others consider how new molecular and palaeontological data have changed our understanding of carnivoran phylogeny. Combined, these studies also illustrate the diverse suite of approaches and questions in evolutionary biology and palaeontology.
Download or read book Molecular Paleobiology of the Echinoderm Skeleton written by Jeffrey R. Thompson and published by Cambridge University Press. This book was released on 2022-12-01 with total page 120 pages. Available in PDF, EPUB and Kindle. Book excerpt: The echinoderms are an ideal group to understand evolution from a holistic, interdisciplinary framework. The genetic regulatory networks underpinning development in echinoderms are some of the best known for any model group. Additionally, the echinoderms have an excellent fossil record, elucidating in in detail the evolutionary changes underpinning morphological evolution. In this Element, the echinoderms are discussed as a model group for molecular palaeobiological studies, integrating what is known of their development, genomes, and fossil record. Together, these insights shed light on the molecular and morphological evolution underpinning the vast biodiversity of echinoderms, and the animal kingdom more generally.
Download or read book Inferring Phylogenies written by Joseph Felsenstein and published by Sinauer Associates Incorporated. This book was released on 2004-01 with total page 664 pages. Available in PDF, EPUB and Kindle. Book excerpt: Phylogenies, or evolutionary trees, are the basic structures necessary to think about and analyze differences between species. Statistical, computational, and algorithmic work in this field has been ongoing for four decades now, and there have been great advances in understanding. Yet no book has summarized this work. Inferring Phylogenies does just that in a single, compact volume. Phylogenies are inferred with various kinds of data. This book concentrates on some of the central ones: discretely coded characters, molecular sequences, gene frequencies, and quantitative traits. Also covered are restriction sites, RAPDs, and microsatellites.
Download or read book Palaeobiology II written by Derek E. G. Briggs and published by John Wiley & Sons. This book was released on 2008-04-15 with total page 600 pages. Available in PDF, EPUB and Kindle. Book excerpt: Palaeobiology: A Synthesis was widely acclaimed both for its content and production quality. Ten years on, Derek Briggs and Peter Crowther have once again brought together over 150 leading authorities from around the world to produce Palaeobiology II. Using the same successful formula, the content is arranged as a series of concise articles, taking a thematic approach to the subject, rather than treating the various fossil groups systematically. This entirely new book, with its diversity of new topics and over 100 new contributors, reflects the exciting developments in the field, including accounts of spectacular newly discovered fossils, and embraces data from other disciplines such as astrobiology, geochemistry and genetics. Palaeobiology II will be an invaluable resource, not only for palaeontologists, but also for students and researchers in other branches of the earth and life sciences. Written by an international team of recognised authorities in the field. Content is concise but informative. Demonstrates how palaeobiological studies are at the heart of a range of scientific themes.
Download or read book New Approaches to Speciation in the Fossil Record written by Douglas H. Erwin and published by Columbia University Press. This book was released on 1995 with total page 542 pages. Available in PDF, EPUB and Kindle. Book excerpt: A collection of case studies that seeks to reexamine the understanding of the speciation patterns that appear in the fossil record through an analysis of the patterns and their presumed processes. In each case, the rigorous techniques of morphological analysis, quantitative genetic analysis, phylogenetic analysis, and sedimentary completeness have been employed.
Download or read book Phylogenetic Supertrees written by Olaf R.P. Bininda-Emonds and published by Springer Science & Business Media. This book was released on 2004-05-31 with total page 547 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is the first book on "phylogenetic supertrees", a recent, but controversial development for inferring evolutionary trees. Rather than analyze the combined primary character data directly, supertree construction proceeds by combining the tree topologies derived from those data. This difference in strategy has allowed for the exciting possibility of larger, more complete phylogenies than are otherwise currently possible, with the potential to revolutionize evolutionarily-based research. This book provides a comprehensive look at supertrees, ranging from the methods used to build supertrees to the significance of supertrees to bioinformatic and biological research. Reviews of many the major supertree methods are provided and four new techniques, including a Bayesian implementation of supertrees, are described for the first time. The far-reaching impact of supertrees on biological research is highlighted both in general terms and through specific examples from diverse clades such as flowering plants, even-toed ungulates, and primates. The book also critically examines the many outstanding challenges and problem areas for this relatively new field, showing the way for supertree construction in the age of genomics. Interdisciplinary contributions from the majority of the leading authorities on supertree construction in all areas of the bioinformatic community (biology, computer sciences, and mathematics) will ensure that this book is a valuable reference with wide appeal to anyone interested in phylogenetic inference.
Download or read book Virtual Paleontology written by Jennifer E. Bauer and published by Cambridge University Press. This book was released on 2021-11-11 with total page 67 pages. Available in PDF, EPUB and Kindle. Book excerpt: Imaging and visualizing fossils in three dimensions with tomography is a powerful approach in paleontology. Here, the authors introduce select destructive and non-destructive tomographic techniques that are routinely applied to fossils and review how this work has improved our understanding of the anatomy, function, taphonomy, and phylogeny of fossil echinoderms. Building on this, this Element discusses how new imaging and computational methods have great promise for addressing long-standing paleobiological questions. Future efforts to improve the accessibility of the data underlying this work will be key for realizing the potential of this virtual world of paleontology.
