Download or read book Physics of Biological Oscillators written by Aneta Stefanovska and published by Springer Nature. This book was released on 2021-05-05 with total page 431 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book, based on a selection of invited presentations from a topical workshop, focusses on time-variable oscillations and their interactions. The problem is challenging, because the origin of the time variability is usually unknown. In mathematical terms, the oscillations are non-autonomous, reflecting the physics of open systems where the function of each oscillator is affected by its environment. Time-frequency analysis being essential, recent advances in this area, including wavelet phase coherence analysis and nonlinear mode decomposition, are discussed. Some applications to biology and physiology are described. Although the most important manifestation of time-variable oscillations is arguably in biology, they also crop up in, e.g. astrophysics, or for electrons on superfluid helium. The book brings together the research of the best international experts in seemingly very different disciplinary areas.
Download or read book Physics of Biological Oscillators written by Aneta Stefanovska and published by . This book was released on 2021 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book, based on a selection of invited presentations from a topical workshop, focusses on time-variable oscillations and their interactions. The problem is challenging, because the origin of the time variability is usually unknown. In mathematical terms, the oscillations are non-autonomous, reflecting the physics of open systems where the function of each oscillator is affected by its environment. Time-frequency analysis being essential, recent advances in this area, including wavelet phase coherence analysis and nonlinear mode decomposition, are discussed. Some applications to biology and physiology are described. Although the most important manifestation of time-variable oscillations is arguably in biology, they also crop up in, e.g. astrophysics, or for electrons on superfluid helium. The book brings together the research of the best international experts in seemingly very different disciplinary areas. .
Download or read book Biological Clocks Rhythms and Oscillations written by Daniel B. Forger and published by MIT Press. This book was released on 2024-08-06 with total page 369 pages. Available in PDF, EPUB and Kindle. Book excerpt: An introduction to the mathematical, computational, and analytical techniques used for modeling biological rhythms, presenting tools from many disciplines and example applications. All areas of biology and medicine contain rhythms, and these behaviors are best understood through mathematical tools and techniques. This book offers a survey of mathematical, computational, and analytical techniques used for modeling biological rhythms, gathering these methods for the first time in one volume. Drawing on material from such disciplines as mathematical biology, nonlinear dynamics, physics, statistics, and engineering, it presents practical advice and techniques for studying biological rhythms, with a common language. The chapters proceed with increasing mathematical abstraction. Part I, on models, highlights the implicit assumptions and common pitfalls of modeling, and is accessible to readers with basic knowledge of differential equations and linear algebra. Part II, on behaviors, focuses on simpler models, describing common properties of biological rhythms that range from the firing properties of squid giant axon to human circadian rhythms. Part III, on mathematical techniques, guides readers who have specific models or goals in mind. Sections on “frontiers” present the latest research; “theory” sections present interesting mathematical results using more accessible approaches than can be found elsewhere. Each chapter offers exercises. Commented MATLAB code is provided to help readers get practical experience. The book, by an expert in the field, can be used as a textbook for undergraduate courses in mathematical biology or graduate courses in modeling biological rhythms and as a reference for researchers.
Download or read book Biological Oscillators Their Mathematical Analysis written by Theodosios Pavlidis and published by Elsevier. This book was released on 2012-12-02 with total page 222 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biological Oscillators: Their Mathematical Analysis introduces the main features of the dynamic properties of biological oscillators and the mathematical techniques necessary for their investigation. It is not a comprehensive description of all known biological oscillators, since this would require a much bigger volume as well as a different type of expertise. Instead certain classes of biological oscillators are described, and then only in as much detail as required for the study of their dynamics. The opening chapter reviews fundamental mathematical concepts and techniques which will be used in the remainder of the book. These include phase plane techniques; asymptotic techniques of Krylov, Bogoliubov, and Mitopolski; and the describing function. Subsequent chapters discuss examples of biological oscillators; phase shifts and phase response curves; the entrainment of oscillators by external inputs; the dynamics of circadian oscillators; effects of changing environment on the dynamics of biological oscillators; the features peculiar to populations of interacting oscillators; and biological phenomena attributable to populations of oscillators.
Download or read book Biological and Biochemical Oscillators written by Britton Chance and published by Academic Press. This book was released on 2014-06-28 with total page 552 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biological and Biochemical Oscillators compiles papers on biochemical and biological oscillators from a theoretical and experimental standpoint. This book discusses the oscillatory behavior, excitability, and propagation phenomena on membranes and membrane-like interfaces; two-dimensional analysis of chemical oscillators; and chemiluminescence in oscillatory oxidation reactions catalyzed. The problems associated with the computer simulation of oscillating systems; mechanism of single-frequency glycolytic oscillations; excitation wave propagation during heart fibrillation; and biochemical cycle of excitation are also elaborated. This compilation likewise covers the physiological rhythms in Saccharomyces cerevisiae populations; integral and indissociable property of eukaryotic gene-action systems; and role of actidione in the temperature jump response of the circadian rhythm in Euglena gracilis. This publication is valuable to biochemists interested in biochemical and biological oscillations.
Download or read book Biological Oscillators written by Theodosios Pavlidis and published by . This book was released on 2012 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Biological Oscillators: Their Mathematical Analysis ...
Download or read book Biochemical Oscillations and Cellular Rhythms written by Albert Goldbeter and published by Cambridge University Press. This book was released on 1997-04-03 with total page 632 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book addresses the molecular bases of some of the most important biochemical rhythms known at the cellular level. The approach rests on the analysis of theoretical models closely related to experimental observations. Among the main rhythms considered are glycolytic oscillations observed in yeast and muscle, oscillations of cyclic AMP in Dictyostelium amoebae, intracellular calcium oscillation observed in a variety of cell types, the mitotic oscillator that drives the cell division cycle in eukaryotes, pulsatile hormone signaling, and circadian rhythms in Drosophila. This book will be of interest to life scientists such as biochemists, cell biologists, chronobiologists, medical scientists and pharmacologists. In addition, it will appeal to scientists studying nonlinear phenomena, including oscillations and chaos, in chemistry, physics, mathematics and theoretical biology.
Download or read book Biochemical Oscillations and Cellular Rhythms written by A. Goldbeter and published by . This book was released on 1996-01 with total page 605 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book addresses the molecular bases of some of the most important biochemical rhythms known at the cellular level. Clarifying the mechanism of these oscillatory phenomena is of key importance for understanding the origin as well as the physiological function of these rhythms, and the conditions in which simple periodic behaviour transforms into complex oscillations including bursting and chaos. It will appeal to graduate students and researchers in a wide variety of fields. On the one hand, it will be of interest to life scientists such as biochemists, cell biologists, medical scientists, pharmacologists and chronobiologists. On the other hand, scientists studying nonlinear phenomena, including oscillations and chaos, in chemistry, physics, mathematics and mathematical biology will also find these ideas of value.
Download or read book Nonlinear Oscillations in Biology and Chemistry written by Hans G. Othmer and published by Springer Science & Business Media. This book was released on 2013-03-08 with total page 296 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume contains the proceedings of a meeting entitled 'Nonlinear Oscillations in Biology and Chemistry', which was held at the University of Utah May 9-11,1985. The papers fall into four major categories: (i) those that deal with biological problems, particularly problems arising in cell biology, (ii) those that deal with chemical systems, (iii) those that treat problems which arise in neurophysiology, and (iv), those whose primary emphasis is on more general models and the mathematical techniques involved in their analysis. Except for the paper by Auchmuty, all are based on talks given at the meeting. The diversity of papers gives some indication of the scope of the meeting, but the printed word conveys neither the degree of interaction between the participants nor the intellectual sparks generated by that interaction. The meeting was made possible by the financial support of the Department of Mathe matics of the University of Utah. I am indebted to Ms. Toni Bunker of the Department of Mathematics for her very able assistance on all manner of details associated with the organization of the meeting. Finally, a word of thanks to all participants for their con tributions to the success of the meeting, and to the contributors to this volume for their efforts in preparing their manuscripts.
Download or read book Physical Models of Living Systems written by Philip Nelson and published by Macmillan Higher Education. This book was released on 2014-12-20 with total page 365 pages. Available in PDF, EPUB and Kindle. Book excerpt: Written for intermediate-level undergraduates pursuing any science or engineering major, Physical Models of Living Systems helps students develop many of the competencies that form the basis of the new MCAT2015. The only prerequisite is first-year physics. With the more advanced "Track-2" sections at the end of each chapter, the book can be used in graduate-level courses as well.
Download or read book Pattern Formations and Oscillatory Phenomena written by Shuichi Kinoshita and published by Elsevier Inc. Chapters. This book was released on 2013-05-09 with total page 75 pages. Available in PDF, EPUB and Kindle. Book excerpt: We present examples of familiar phenomena found in nonequilibrium systems, including oscillatory phenomena, order-formation processes, and pattern formation. In particular, we introduce commonly used mathematical methods to analyze their characteristics. First, we present oscillations described by the Lotka–Volterra and van der Pol equations, the Brusselator, the Oregonator, and relaxation oscillations as examples of oscillatory phenomena. Second, we investigate the order-formation process in colloidal crystals and present an experimental observation of 2D array formation. Third, we demonstrate pattern formation in crystals on the basis of the Mullins–Sekerka instability, and in chemical and biological systems on the basis of the Turing instability. In particular, we describe the optical properties and development of sophisticated structural patterns that directly interact with light. Finally, we briefly describe a theoretical phase-transition analogy that might clarify the concept of order formation in nonequilibrium systems.
Download or read book Harmonic Oscillators written by Yilun Shang and published by . This book was released on 2019 with total page 214 pages. Available in PDF, EPUB and Kindle. Book excerpt: "This book gathers state-of-the-art advances on harmonic oscillators including their types, functions, and applications. In Chapter 1, Neetik and Amlan have discussed the recent progresses of information theoretic tools in the context of free and confined harmonic oscillator. Confined quantum systems have provided appreciable interest in areas of physics, chemistry, biology, etc., since its inception. A particle under extreme pressure environment unfolds many fascinating, notable physical and chemical changes. The desired effect is achieved by reducing the spatial boundary from infinity to a finite region. Similarly, in the last decade, information measures were investigated extensively in diverse quantum problems, in both free and constrained situations. The most prominent amongst these are: Fisher information, Shannon entropy, Renyi entropy, Tsallis entropy, Onicescu energy and several complexities. Arguably, these are the most effective measures of uncertainty, as they do not make any reference to some specific points of a respective Hilbert space. These have been invoked to explain several physic-chemical properties of a system under investigation. Kullback Leibler divergence or relative entropy describes how a given probability distribution shifts from a reference distribution function. This characterizes a measure of discrimination between two states. In other words, it extracts the change of information in going from one state to another. In Chapter 2, Nabakumar, Subhasree, and Paulami have revisited classical-quantum correspondence in the context of linear Simple Harmonic Oscillator (SHO). According to Bohr's correspondence principle, quantum mechanically calculated results match with the classically expected results when quantum number is very high. Classical quantum correspondence may also be visualized in the limit when the action integral is much greater than Planck's constant. When de-Broglie wave length associated with a particle is much larger than system size, then quantum mechanical results also match with the classical results. In the context of dynamics, Ehrenfest equation of motion is used in quantum domain, which is analogous to classical Newton's equation of motion. SHO is one of the most important systems for several reasons. It is one of the few exactly solvable problems. Any stable molecular potential can be approximated by SHO near the equilibrium point. This builds the foundation for the understanding of complex modes of vibration in large molecules, the motion of atoms in a solid lattice, the theory of heat capacity, vibration motion of nuclei in molecule etc. The authors have revisited the common solution techniques and important properties of both classical and quantum linear SHO. Then they focused on probability distribution, quantum mechanical tunneling, classical and quantum dynamics of position, momentum and their actuations, viral theorems, etc. and also analyzed how quantum mechanical results finally tend to classical results in the high quantum number limit. In Chapter 3, Neeraj has discussed the nature of atomic motions, sometimes referred to as lattice vibrations. The lattice dynamics deals with the vibrations of the atoms inside the crystals. In order to write the dynamic equations of the motion of crystal atoms, we need to describe an inter-atomic interaction. Therefore, it is natural to start the study of the lattice dynamics with the case of small harmonic vibrations. The dynamics of one-dimensional and two-dimensional vibrations of monatomic and diatomic crystals can be understood by using the simple model forces based on harmonic approximation. This harmonic approximation is related to a simple ball-spring model. According to this model, each atom is coupled with the neighboring atoms by spring constants. The collective motion of atoms leads to a distinct traveling wave over the whole crystal, leading to the collective motion, so-called phonon. The simple ball-spring model enlightens us some of the significant common features of lattice dynamics that have been discussed throughout this chapter. Further, this chapter helps in understanding the quantization energy of a harmonic oscillation and the concept of phonon"--
Download or read book 2019 20 MATRIX Annals written by Jan de Gier and published by Springer Nature. This book was released on 2021-02-10 with total page 798 pages. Available in PDF, EPUB and Kindle. Book excerpt: MATRIX is Australia’s international and residential mathematical research institute. It facilitates new collaborations and mathematical advances through intensive residential research programs, each 1-4 weeks in duration. This book is a scientific record of the ten programs held at MATRIX in 2019 and the two programs held in January 2020: · Topology of Manifolds: Interactions Between High and Low Dimensions · Australian-German Workshop on Differential Geometry in the Large · Aperiodic Order meets Number Theory · Ergodic Theory, Diophantine Approximation and Related Topics · Influencing Public Health Policy with Data-informed Mathematical Models of Infectious Diseases · International Workshop on Spatial Statistics · Mathematics of Physiological Rhythms · Conservation Laws, Interfaces and Mixing · Structural Graph Theory Downunder · Tropical Geometry and Mirror Symmetry · Early Career Researchers Workshop on Geometric Analysis and PDEs · Harmonic Analysis and Dispersive PDEs: Problems and Progress The articles are grouped into peer-reviewed contributions and other contributions. The peer-reviewed articles present original results or reviews on a topic related to the MATRIX program; the remaining contributions are predominantly lecture notes or short articles based on talks or activities at MATRIX.
Download or read book Modelling Biological Systems with Coupled Oscillators written by Francesco d'Ovidio and published by . This book was released on 2002 with total page 165 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Theory of Oscillators written by A. A. Andronov and published by Elsevier. This book was released on 2013-10-22 with total page 848 pages. Available in PDF, EPUB and Kindle. Book excerpt: Theory of Oscillators presents the applications and exposition of the qualitative theory of differential equations. This book discusses the idea of a discontinuous transition in a dynamic process. Organized into 11 chapters, this book begins with an overview of the simplest type of oscillatory system in which the motion is described by a linear differential equation. This text then examines the character of the motion of the representative point along the hyperbola. Other chapters consider examples of two basic types of non-linear non-conservative systems, namely, dissipative systems and self-oscillating systems. This book discusses as well the discontinuous self-oscillations of a symmetrical multi-vibrator neglecting anode reaction. The final chapter deals with the immense practical importance of the stability of physical systems containing energy sources particularly control systems. This book is a valuable resource for electrical engineers, scientists, physicists, and mathematicians.
Download or read book Cellular Oscillatory Mechanisms written by Miguel Maroto and published by Springer Science & Business Media. This book was released on 2008-12-19 with total page 166 pages. Available in PDF, EPUB and Kindle. Book excerpt: Oscillatory dynamics are a central feature of a wide range of biological processes. This text fully explores cellular oscillations, focusing particularly on elucidating the basic mechanisms that underlie these oscillations.
Download or read book From Clocks to Chaos written by Leon Glass and published by Princeton University Press. This book was released on 1988-07-21 with total page 274 pages. Available in PDF, EPUB and Kindle. Book excerpt: In an important new contribution to the literature of chaos, two distinguished researchers in the field of physiology probe central theoretical questions about physiological rhythms. Topics discussed include: How are rhythms generated? How do they start and stop? What are the effects of perturbation of the rhythms? How are oscillations organized in space? Leon Glass and Michael Mackey address an audience of biological scientists, physicians, physical scientists, and mathematicians, but the work assumes no knowledge of advanced mathematics. Variation of rhythms outside normal limits, or appearance of new rhythms where none existed previously, are associated with disease. One of the most interesting features of the book is that it makes a start at explaining "dynamical diseases" that are not the result of infection by pathogens but that stem from abnormalities in the timing of essential functions. From Clocks to Chaos provides a firm foundation for understanding dynamic processes in physiology.
