Download or read book Phenotyping From Plant to Data to Impact and Highlights of the The International Plant Phenotyping Symposium IPPS 2018 written by Trevor Garnett and published by Frontiers Media SA. This book was released on 2021-01-19 with total page 170 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book State of the art Technology and Applications in Crop Phenomics written by Wanneng Yang and published by Frontiers Media SA. This book was released on 2021-12-01 with total page 267 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book IPPS 2022 Plant Phenotyping for a Sustainable Future written by Ulrich Schurr and published by Frontiers Media SA. This book was released on 2024-03-06 with total page 191 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book High Throughput Plant Phenotyping written by Argelia Lorence and published by Springer Nature. This book was released on 2022-07-27 with total page 300 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume looks at a collection of the latest techniques used to quantify the genome-by-environment-by-management (GxExM) interactions in a variety of model and plant crops. The chapters in this book are organized into five parts. Part One discusses high-throughput plant phenotyping (HTPP) protocols for plants growing under controlled conditions. Part Two present novel algorithms for extracting data from seed images, color analysis from fruits, and other digital readouts from 2D objects. Part Three covers molecular imaging protocols using PET and X-ray approaches, and Part Four presents a collection of HTPP techniques for crops growing under field conditions. The last part focuses on molecular analysis, metabolomics, network analysis, and statistical methods for the quantitative genetic analysis of HTP data. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and practical, High-Throughput Plant Phenotyping: Review and Protocols is a valuable resource for both novice and expert researchers looking to learn more about this important field. Chapter 21 is available open access under a Creative Commons Attribution 4.0 International License via link.springer.com.
Download or read book Phenotyping for Plant Breeding written by Siva Kumar Panguluri and published by Springer Science & Business Media. This book was released on 2013-10-09 with total page 220 pages. Available in PDF, EPUB and Kindle. Book excerpt: Plant phenotyping is the thorough assessment of plant traits such as growth, development, adaptation, yield, quality, tolerance, resistance, architecture, and the basic measurement of individual quantitative parameters that form the basis for understanding of traits. Genetic approaches to understand plant growth and development have always benefitted from phenotyping techniques that are simple, rapid and measurable in units. The forward genetics approach is all about understanding the trait inheritance using the phenotypic data and in most cases it is the mutant phenotypes that formed the basis for understanding of gene functions. With rapid advancement of genotyping techniques, high throughput genotyping has become a reality at costs people never imagined to be that low, but the phenotypic methods did not receive same attention. However, without quality phenotyping data the genotyping data cannot be effectively put to use in plant improvement. Therefore efforts are underway to develop high-throughput phenotyping methods in plants to keep pace with revolutionary advancement in genotyping techniques to enhance the efficiency of crop improvement programs. Keeping this in mind, we described in this book the best phenomic tools available for trait improvement in some of the world’s most important crop plants.
Download or read book Intelligent Image Analysis for Plant Phenotyping written by Ashok Samal and published by CRC Press. This book was released on 2020-10-21 with total page 347 pages. Available in PDF, EPUB and Kindle. Book excerpt: Domesticated crops are the result of artificial selection for particular phenotypes or, in some cases, natural selection for an adaptive trait. Plant traits can be identified through image-based plant phenotyping, a process that was, until recently, strenous and time-consuming. Intelligent Image Analysis for Plant Phenotyping reviews information on time-saving techniques, using computer vision and imaging technologies. These methodologies provide an automated, non-invasive, and scalable mechanism by which to define and collect plant phenotypes. Beautifully illustrated, with numerous color images, the book focuses on phenotypes measured from individual plants under controlled experimental conditions, which are widely available in high-throughput systems. Features: Presents methodologies for image processing, including data-driven and machine learning techniques for plant phenotyping. Features information on advanced techniques for extracting phenotypes through images and image sequences captured in a variety of modalities. Includes real-world scientific problems, including predicting yield by modeling interactions between plant data and environmental information. Discusses the challenge of translating images into biologically informative quantitative phenotypes. A practical resource for students, researchers, and practitioners, this book is invaluable for those working in the emerging fields at the intersection of computer vision and plant sciences.
Download or read book Plant Phenotyping and Phenomics for Plant Breeding written by Gustavo A. Lobos and published by Frontiers Media SA. This book was released on 2018-08-16 with total page 369 pages. Available in PDF, EPUB and Kindle. Book excerpt: As a consequence of the global climate change, both the reduction on yield potential and the available surface area of cultivated species will compromise the production of food needed for a constant growing population. There is consensus about the significant gap between world food consumption projected for the coming decades and the expected crop yield-improvements, which are estimated to be insufficient to meet the demand. The complexity of this scenario will challenge breeders to develop cultivars that are better adapted to adverse environmental conditions, therefore incorporating a new set of morpho-physiological and physico-chemical traits; a large number of these traits have been found to be linked to heat and drought tolerance. Currently, the only reasonable way to satisfy all these demands is through acquisition of high-dimensional phenotypic data (high-throughput phenotyping), allowing researchers with a holistic comprehension of plant responses, or ‘Phenomics’. Phenomics is still under development. This Research Topic aims to be a contribution to the progress of methodologies and analysis to help understand the performance of a genotype in a given environment.
Download or read book Phenomics written by Roberto Fritsche-Neto and published by Springer. This book was released on 2015-01-13 with total page 145 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book represents a pioneer initiative to describe the new technologies available for next-generation phenotyping and applied to plant breeding. Over the last several years plant breeding has experienced a true revolution. Phenomics, i.e., high-throughput phenotyping using automation, robotics and remote data collection, is changing the way cultivars are developed. Written in an easy to understand style, this book offers an indispensable reference work for all students, instructors and scientists who are interested in the latest innovative technologies applied to plant breeding.
Download or read book Advances Plant Phenotyping More Sustaihb written by Achim Walter and published by Burleigh Dodds Series in Agricultural Science. This book was released on 2022-03-22 with total page 420 pages. Available in PDF, EPUB and Kindle. Book excerpt: Plant phenotyping is an emerging technology that involves the quantitative analysis of structural and functional plant traits. However, it is widely recognised that phenotyping needs to match similar advances in genetics if it is to not create a bottleneck in plant breeding. Advances in plant phenotyping for more sustainable crop production reviews the wealth of research on advances in plant phenotyping to meet this challenge, such as the development of new technologies including hyperspectral sensors such as LIDAR, NIR/SWIR, as well as alternative delivery/carrier systems, such as ground-based proximal distance systems and UAVs. The book details the development of plant phenotyping as a technique to analyse crop roots and functionality, as well as its use in understanding and improving crop response to biotic and abiotic stresses.
Download or read book Instant Insights Phenotyping Applications in Agriculture written by Dr Thomas Vatter and published by . This book was released on 2024-01-23 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book reviews recent advances in the application of phenotyping techniques to optimise crop breeding programmes. Chapters discuss the use of phenotyping as a means of improving crop yield, boosting genetic gain and identifying desirable traits in crop roots.
Download or read book Phenotyping Crop Plants for Physiological and Biochemical Traits written by P. Sudhakar and published by Academic Press. This book was released on 2016-04-05 with total page 196 pages. Available in PDF, EPUB and Kindle. Book excerpt: Phenotyping Crop Plants for Physiological and Biochemical Traits presents a proven range of methodologies and practices for effective, efficient, and appropriate typing of crop plants. By addressing the basic principles and precautions needed when conducting crop-based experiments, this book guides the reader in selecting the appropriate method based on the growing environment, whether greenhouse, pot, field, or liquid (hydroponic). By addressing the quantification of seed traits related to growth experiments, including their viability and vigor, this book presents methodology options for optimum yield based on potential abiotic stresses. Discusses various methods that can contribute to phenotyping of crop plants for various physiological and biochemical traits Presents reliable techniques for phenotyping or quantifying plant characters during varied climatic conditions Provides insights for selecting appropriate methodologies for specific crop growing situations Identifies the most appropriate protocols and methods for analyzing crop traits
Download or read book Paving the Way for FAIR Data in Plant Phenotyping written by and published by . This book was released on 2021 with total page 209 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book High Throughput Crop Phenotyping written by Jianfeng Zhou and published by Springer. This book was released on 2021-08-27 with total page 249 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides an overview of the innovations in crop phenotyping using emerging technologies, i.e., high-throughput crop phenotyping technology, including its concept, importance, breakthrough and applications in different crops and environments. Emerging technologies in sensing, machine vision and high-performance computing are changing the world beyond our imagination. They are also becoming the most powerful driver of the innovation in agriculture technology, including crop breeding, genetics and management. It includes the state of the art of technologies in high-throughput phenotyping, including advanced sensors, automation systems, ground-based or aerial robotic systems. It also discusses the emerging technologies of big data processing and analytics, such as advanced machine learning and deep learning technologies based on high-performance computing infrastructure. The applications cover different organ levels (root, shoot and seed) of different crops (grains, soybean, maize, potato) at different growth environments (open field and controlled environments). With the contribution of more than 20 world-leading researchers in high-throughput crop phenotyping, the authors hope this book provides readers the needed information to understand the concept, gain the insides and create the innovation of high-throughput phenotyping technology.
Download or read book Phenomics in Crop Plants Trends Options and Limitations written by Jitendra Kumar and published by Springer. This book was released on 2016-10-12 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Identification of desirable genotypes with traits of interest is discernible for making genetic improvement of crop plants. In this direction, screening of a large number of germplasm for desirable traits and transfer of identified traits into agronomic backgrounds through recombination breeding is the common breeding approach. Although visual screening is easier for qualitative traits, its use is not much effective for quantitative traits and also for those, which are difficult to score visually. Therefore, it is imperative to phenotype the germplasm accessions and breeding materials precisely using high throughput phenomics tools for challenging and complex traits under natural, controlled and harsh environmental conditions. Realizing the importance of phenotyping data towards identification and utilization of a germplasm as donors, global scientific community has exerted increased focus on advancing phenomics in crop plants leading to development of a number of techniques and methodologies for screening of agronomic, physiological, and biochemical traits. These technologies have now become much advanced and entered the era of digital science. This book provides exhaustive information on various aspects related to phenotyping of crop plants and offers a most comprehensive reference on the developments made in traditional and high throughput phenotyping of agricultural crops.
Download or read book High Throughput Phenotyping in Plants written by Jennifer Normanly and published by Humana Press. This book was released on 2017-04-30 with total page 365 pages. Available in PDF, EPUB and Kindle. Book excerpt: Genetic approaches to understanding plant growth and development have always benefitted from screens that are simple, quantitative and rapid. Visual screens and morphometric analysis have yielded a plethora of interesting mutants and traits that have provided insight into complex regulatory pathways, and yet many genes within any given plant genome remain undefined. The premise underlying High Throughput Phenotyping in Plants: Methods and Protocols is that the higher the resolution of the phenotype analysis the more likely that new genes and complex interactions will be revealed. The methods described in this volume can be generally classified as quantitative profiling of cellular components, ranging from ions to small molecule metabolites and nuclear DNA, or image capture that ranges in resolution from chlorophyll fluorescence from leaves and time-lapse images of seedling shoots and roots to individual plants within a population at a field site. Written in the successful Methods in Molecular BiologyTM series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols, and notes on troubleshooting and avoiding known pitfalls. Authoritative and easily accessible, High Throughput Phenotyping in Plants: Methods and Protocols serves as an invaluable guide to plant researchers and all scientists who wish to better understand plant growth and development.
Download or read book An Algorithmic Toolbox for Plant Phenotyping with 3D Point Clouds written by Illia Ziamtsov and published by . This book was released on 2022 with total page 92 pages. Available in PDF, EPUB and Kindle. Book excerpt: Developing automated methods to efficiently process large volumes of point cloud data remains a grand challenge for 3D plant phenotyping applications. Phenotyping is one of the key pre-cursors towards developing more efficient breeding strategies and improvement of crop yields. Using 3D point clouds for plant phenotyping helps to eliminate problems that are usually encountered by performing phenotyping with images. However, point clouds come with their own set of problems, which include registration errors, missing data, sensor noise, and scalability. Point clouds of plants also typically have problems related to "natural" noise caused by small features such as trichomes or natural shape irregularities; further, handling the diversity of organic structures observed across plant species is challenging. All these nuances need to be considered to ensure quality extraction of phenotyping traits. Here, we develop a collection of graph-theoretic and machine learning methods to tackle three primary challenges in plant phenotyping: leaf/branch classification, leaf counting, and branch skeletonization. For classification, we assess and validate the accuracy of our methods on a dataset of 54 3D shoot architectures representing multiple species, growth conditions, and developmental time-points. Using deep learning, we achieved 97.8% accuracy on classifying leaves versus branches; critically, we also demonstrate the robustness of our method to growth conditions and species that have not been trained on, which is important in practical applications but is often untested. For leaf counting, we developed an enhanced region growing algorithm to reduce over-segmentation; this method achieved 86.6% accuracy, outperforming prior methods developed for this problem. Finally, for branch skeletonization, we developed an enhanced tip detection technique that ran an order of magnitude faster and generated more precise skeleton architectures compared to prior methods. In addition, we improved the quality of angles produced by skeletonization. Overall, our improvements enable higher throughput and accurate extraction of phenotypic properties from 3D point cloud data. Finally, all the algorithmic methods presented in this thesis were packaged in a stand alone GUI application, called Plant3D (P3D).
Download or read book The Maize Genome written by Jeffrey Bennetzen and published by Springer. This book was released on 2018-11-24 with total page 390 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book discusses advances in our understanding of the structure and function of the maize genome since publication of the original B73 reference genome in 2009, and the progress in translating this knowledge into basic biology and trait improvement. Maize is an extremely important crop, providing a large proportion of the world’s human caloric intake and animal feed, and serving as a model species for basic and applied research. The exceptionally high level of genetic diversity within maize presents opportunities and challenges in all aspects of maize genetics, from sequencing and genotyping to linking genotypes to phenotypes. Topics covered in this timely book range from (i) genome sequencing and genotyping techniques, (ii) genome features such as centromeres and epigenetic regulation, (iii) tools and resources available for trait genomics, to (iv) applications of allele mining and genomics-assisted breeding. This book is a valuable resource for researchers and students interested in maize genetics and genomics.
