Download or read book Multivariate Algorithmics in Biological Data Analysis written by Johannes Uhlmann and published by Univerlagtuberlin. This book was released on 2011 with total page 198 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Introduction to the Exploration of Multivariate Biological Data written by János Podani and published by . This book was released on 2000 with total page 420 pages. Available in PDF, EPUB and Kindle. Book excerpt: Attention is focused on the supraindividual biological level in example plant ecology, phytosociology and taxonomy.
Download or read book Advances in Multivariate Data Analysis written by Hans-Hermann Bock and published by Springer Science & Business Media. This book was released on 2012-09-30 with total page 276 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book presents a range of new developments in the theory and practice of multivariate statistical data analysis. Several contributions illustrate the use of multivariate methods in application fields such as economics, medicine, environment, and biology.
Download or read book Parameterized Algorithmics for Network Analysis Clustering Querying written by Christian Komusiewicz and published by Univerlagtuberlin. This book was released on 2011 with total page 181 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Bioinformatics Algorithms written by Ion Mandoiu and published by John Wiley & Sons. This book was released on 2008-02-25 with total page 528 pages. Available in PDF, EPUB and Kindle. Book excerpt: Presents algorithmic techniques for solving problems in bioinformatics, including applications that shed new light on molecular biology This book introduces algorithmic techniques in bioinformatics, emphasizing their application to solving novel problems in post-genomic molecular biology. Beginning with a thought-provoking discussion on the role of algorithms in twenty-first-century bioinformatics education, Bioinformatics Algorithms covers: General algorithmic techniques, including dynamic programming, graph-theoretical methods, hidden Markov models, the fast Fourier transform, seeding, and approximation algorithms Algorithms and tools for genome and sequence analysis, including formal and approximate models for gene clusters, advanced algorithms for non-overlapping local alignments and genome tilings, multiplex PCR primer set selection, and sequence/network motif finding Microarray design and analysis, including algorithms for microarray physical design, missing value imputation, and meta-analysis of gene expression data Algorithmic issues arising in the analysis of genetic variation across human population, including computational inference of haplotypes from genotype data and disease association search in case/control epidemiologic studies Algorithmic approaches in structural and systems biology, including topological and structural classification in biochemistry, and prediction of protein-protein and domain-domain interactions Each chapter begins with a self-contained introduction to a computational problem; continues with a brief review of the existing literature on the subject and an in-depth description of recent algorithmic and methodological developments; and concludes with a brief experimental study and a discussion of open research challenges. This clear and approachable presentation makes the book appropriate for researchers, practitioners, and graduate students alike.
Download or read book Multivariate Data Integration Using R written by Kim-Anh Lê Cao and published by CRC Press. This book was released on 2021-11-08 with total page 316 pages. Available in PDF, EPUB and Kindle. Book excerpt: Large biological data, which are often noisy and high-dimensional, have become increasingly prevalent in biology and medicine. There is a real need for good training in statistics, from data exploration through to analysis and interpretation. This book provides an overview of statistical and dimension reduction methods for high-throughput biological data, with a specific focus on data integration. It starts with some biological background, key concepts underlying the multivariate methods, and then covers an array of methods implemented using the mixOmics package in R. Features: Provides a broad and accessible overview of methods for multi-omics data integration Covers a wide range of multivariate methods, each designed to answer specific biological questions Includes comprehensive visualisation techniques to aid in data interpretation Includes many worked examples and case studies using real data Includes reproducible R code for each multivariate method, using the mixOmics package The book is suitable for researchers from a wide range of scientific disciplines wishing to apply these methods to obtain new and deeper insights into biological mechanisms and biomedical problems. The suite of tools introduced in this book will enable students and scientists to work at the interface between, and provide critical collaborative expertise to, biologists, bioinformaticians, statisticians and clinicians.
Download or read book Algorithmic Aspects of Bioinformatics written by Hans-Joachim Böckenhauer and published by Springer Science & Business Media. This book was released on 2007-06-06 with total page 395 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book introduces some key problems in bioinformatics, discusses the models used to formally describe these problems, and analyzes the algorithmic approaches used to solve them. After introducing the basics of molecular biology and algorithmics, Part I explains string algorithms and alignments; Part II details the field of physical mapping and DNA sequencing; and Part III examines the application of algorithmics to the analysis of biological data. Exciting application examples include predicting the spatial structure of proteins, and computing haplotypes from genotype data. Figures, chapter summaries, detailed derivations, and examples, are provided.
Download or read book The Multivariate Algorithmic Revolution and Beyond written by Hans L. Bodlaender and published by Springer. This book was released on 2012-06-16 with total page 506 pages. Available in PDF, EPUB and Kindle. Book excerpt: Parameterized complexity is currently a thriving field in complexity theory and algorithm design. A significant part of the success of the field can be attributed to Michael R. Fellows. This Festschrift has been published in honor of Mike Fellows on the occasion of his 60th birthday. It contains 20 papers that showcase the important scientific contributions of this remarkable man, describes the history of the field of parameterized complexity, and also reflects on other parts of Mike Fellows’s unique and broad range of interests, including his work on the popularization of discrete mathematics for young children. The volume contains several surveys that introduce the reader to the field of parameterized complexity and discuss important notions, results, and developments in this field.
Download or read book Analysis of Multivariate and High Dimensional Data written by Inge Koch and published by . This book was released on 2013 with total page 400 pages. Available in PDF, EPUB and Kindle. Book excerpt: Big data' poses challenges that require both classical multivariate methods and contemporary techniques from machine learning and engineering. This modern text equips you for the new world - integrating the old and the new, fusing theory and practice and bridging the gap to statistical learning. The theoretical framework includes formal statements that set out clearly the guaranteed 'safe operating zone' for the methods and allow you to assess whether data is in the zone, or near enough. Extensive examples showcase the strengths and limitations of different methods with small classical data, data from medicine, biology, marketing and finance, high-dimensional data from bioinformatics, functional data from proteomics, and simulated data. High-dimension low-sample-size data gets special attention. Several data sets are revisited repeatedly to allow comparison of methods. Generous use of colour, algorithms, Matlab code, and problem sets complete the package. Suitable for master's/graduate students in statistics and researchers in data-rich disciplines.
Download or read book New Approaches in Classification and Data Analysis written by Edwin Diday and published by Springer Science & Business Media. This book was released on 2013-03-14 with total page 695 pages. Available in PDF, EPUB and Kindle. Book excerpt: The subject of this book is the analysis and processing of structural or quantitative data with emphasis on classification methods, new algorithms as well as applications in various fields related to data analysis and classification. The book presents the state of the art in world-wide research and application of methods from the fields indicated above and consists of survey papers as well as research papers.
Download or read book Basics of Bioinformatics written by Rui Jiang and published by Springer Science & Business Media. This book was released on 2013-11-26 with total page 412 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book outlines 11 courses and 15 research topics in bioinformatics, based on curriculums and talks in a graduate summer school on bioinformatics that was held in Tsinghua University. The courses include: Basics for Bioinformatics, Basic Statistics for Bioinformatics, Topics in Computational Genomics, Statistical Methods in Bioinformatics, Algorithms in Computational Biology, Multivariate Statistical Methods in Bioinformatics Research, Association Analysis for Human Diseases: Methods and Examples, Data Mining and Knowledge Discovery Methods with Case Examples, Applied Bioinformatics Tools, Foundations for the Study of Structure and Function of Proteins, Computational Systems Biology Approaches for Deciphering Traditional Chinese Medicine, and Advanced Topics in Bioinformatics and Computational Biology. This book can serve as not only a primer for beginners in bioinformatics, but also a highly summarized yet systematic reference book for researchers in this field. Rui Jiang and Xuegong Zhang are both professors at the Department of Automation, Tsinghua University, China. Professor Michael Q. Zhang works at the Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
Download or read book Analyzing the Large Number of Variables in Biomedical and Satellite Imagery written by Phillip I. Good and published by John Wiley & Sons. This book was released on 2011-05-18 with total page 169 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book grew out of an online interactive offered through statcourse.com, and it soon became apparent to the author that the course was too limited in terms of time and length in light of the broad backgrounds of the enrolled students. The statisticians who took the course needed to be brought up to speed both on the biological context as well as on the specialized statistical methods needed to handle large arrays. Biologists and physicians, even though fully knowledgeable concerning the procedures used to generate microaarrays, EEGs, or MRIs, needed a full introduction to the resampling methods—the bootstrap, decision trees, and permutation tests, before the specialized methods applicable to large arrays could be introduced. As the intended audience for this book consists both of statisticians and of medical and biological research workers as well as all those research workers who make use of satellite imagery including agronomists and meteorologists, the book provides a step-by-step approach to not only the specialized methods needed to analyze the data from microarrays and images, but also to the resampling methods, step-down multi-comparison procedures, multivariate analysis, as well as data collection and pre-processing. While many alternate techniques for analysis have been introduced in the past decade, the author has selected only those techniques for which software is available along with a list of the available links from which the software may be purchased or downloaded without charge. Topical coverage includes: very large arrays; permutation tests; applying permutation tests; gathering and preparing data for analysis; multiple tests; bootstrap; applying the bootstrap; classification methods; decision trees; and applying decision trees.
Download or read book Mathematical Foundations of Computer Science 2012 written by Branislav Rovan and published by Springer. This book was released on 2012-08-01 with total page 852 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume constitutes the refereed proceedings of the 37th International Symposium on Mathematical Foundations of Computer Science, MFCS 2012, held in Bratislava, Slovakia, in August 2012. The 63 revised full papers presented together with 8 invited talks were carefully reviewed and selected from 162 submissions. Topics covered include algorithmic game theory, algorithmic learning theory, algorithms and data structures, automata, formal languages, bioinformatics, complexity, computational geometry, computer-assisted reasoning, concurrency theory, databases and knowledge-based systems, foundations of computing, logic in computer science, models of computation, semantics and verification of programs, and theoretical issues in artificial intelligence.
Download or read book Analysis Of Biological Data A Soft Computing Approach written by Sanghamitra Bandyopadhyay and published by World Scientific. This book was released on 2007-09-03 with total page 353 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bioinformatics, a field devoted to the interpretation and analysis of biological data using computational techniques, has evolved tremendously in recent years due to the explosive growth of biological information generated by the scientific community. Soft computing is a consortium of methodologies that work synergistically and provides, in one form or another, flexible information processing capabilities for handling real-life ambiguous situations. Several research articles dealing with the application of soft computing tools to bioinformatics have been published in the recent past; however, they are scattered in different journals, conference proceedings and technical reports, thus causing inconvenience to readers, students and researchers.This book, unique in its nature, is aimed at providing a treatise in a unified framework, with both theoretical and experimental results, describing the basic principles of soft computing and demonstrating the various ways in which they can be used for analyzing biological data in an efficient manner. Interesting research articles from eminent scientists around the world are brought together in a systematic way such that the reader will be able to understand the issues and challenges in this domain, the existing ways of tackling them, recent trends, and future directions. This book is the first of its kind to bring together two important research areas, soft computing and bioinformatics, in order to demonstrate how the tools and techniques in the former can be used for efficiently solving several problems in the latter.
Download or read book Multivariate Statistical Machine Learning Methods for Genomic Prediction written by Osval Antonio Montesinos López and published by Springer Nature. This book was released on 2022-02-14 with total page 707 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is open access under a CC BY 4.0 license This open access book brings together the latest genome base prediction models currently being used by statisticians, breeders and data scientists. It provides an accessible way to understand the theory behind each statistical learning tool, the required pre-processing, the basics of model building, how to train statistical learning methods, the basic R scripts needed to implement each statistical learning tool, and the output of each tool. To do so, for each tool the book provides background theory, some elements of the R statistical software for its implementation, the conceptual underpinnings, and at least two illustrative examples with data from real-world genomic selection experiments. Lastly, worked-out examples help readers check their own comprehension.The book will greatly appeal to readers in plant (and animal) breeding, geneticists and statisticians, as it provides in a very accessible way the necessary theory, the appropriate R code, and illustrative examples for a complete understanding of each statistical learning tool. In addition, it weighs the advantages and disadvantages of each tool.
Download or read book Genome Scale Algorithm Design written by Veli Mäkinen and published by Cambridge University Press. This book was released on 2023-10-31 with total page 469 pages. Available in PDF, EPUB and Kindle. Book excerpt: The fundamental algorithms and data structures that power standard bioscience workflows, with rigorous computer science formulations.
Download or read book Data Mining for Bioinformatics written by Sumeet Dua and published by CRC Press. This book was released on 2012-11-06 with total page 351 pages. Available in PDF, EPUB and Kindle. Book excerpt: Covering theory, algorithms, and methodologies, as well as data mining technologies, Data Mining for Bioinformatics provides a comprehensive discussion of data-intensive computations used in data mining with applications in bioinformatics. It supplies a broad, yet in-depth, overview of the application domains of data mining for bioinformatics to he
