Download or read book Techniques in Molecular Systematics and Evolution written by Rob DeSalle and published by Birkhäuser. This book was released on 2013-12-01 with total page 414 pages. Available in PDF, EPUB and Kindle. Book excerpt: The amount of information that can be obtained by using molecular techniques in evolution, systematics and ecology has increased exponentially over the last ten years. The need for more rapid and efficient methods of data acquisition and analysis is growing accordingly. This manual presents some of the most important techniques for data acquisition developed over the last years. The choice and justification of data analysis techniques is also an important and critical aspect of modern phylogenetic and evolutionary analysis and so a considerable part of this volume addresses this important subject. The book is mainly written for students and researchers from evolutionary biology in search for methods to acquire data, but also from molecular biology who might be looking for information on how data are analyzed in an evolutionary context. To aid the user, information on web-located sites is included wherever possible. Approaches that will push the amount of information which systematics will gather in the

Download or read book Molecular Systematics and Evolution Theory and Practice written by R. DeSalle and published by Birkhäuser. This book was released on 2013-03-08 with total page 301 pages. Available in PDF, EPUB and Kindle. Book excerpt: Important practical implications are established by case reports and specific examples. The present book is the ideal complement to the practitioner’s manual Techniques in Molecular Systematics and Evolution, recently published by the same editors in the Birkhäuser MTBM book series. The first part of this book deals with important applications of evolutionary and systematic analysis at different taxonomic levels. The second part discusses DNA multiple sequence alignment, species designations using molecular data, evo-devo and other topics that are problematic or controversial. In the last part, novel topics in molecular evolution and systematics, like genomics, comparative methods in molecular evolution and the use of large data bases are described. The final chapter deals with problems in bacterial evolution, considering the increasing access to large numbers of complete genome sequences.

Download or read book Molecular Systematics and Plant Evolution written by Peter M. Hollingsworth and published by CRC Press. This book was released on 1999-08-19 with total page 508 pages. Available in PDF, EPUB and Kindle. Book excerpt: Molecular Systematics and Plant Evolution discusses the diversity and evolution of plants with a molecular approach. It looks at population genetics, phylogeny (history of evolution) and developmental genetics, to provide a framework from which to understand evolutionary patterns and relationships amongst plants. The international panel of contributors are all respected systematists and evolutionary biologists, who have brought together a wide range of topics from the forefront of research while keeping the text accessible to students. It has been written for senior undergraduates, postgraduates and researchers in the fields of botany, systematics, population / conservation genetics, phylogenetics and evolutionary biology.

Download or read book Molecular Systematics of Plants II written by Pamela Soltis and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 586 pages. Available in PDF, EPUB and Kindle. Book excerpt: In the five years since the publication of Molecular Systematics of Plants, the field of molecular systematics has advanced at an astonishing pace. This period has been marked by a volume of new empirical data and advances in theoretical and analytical issues related to DNA. Comparative DNA sequencing, facilitated by the amplification of DNA via the polymerase chain reaction (PCR), has become the tool of choice for molecular systematics. As a result, large portions of the Molecular Systematics of Plants have become outdated. Molecular Systematics of Plants II summarizes these recent achievements in plant molecular systematics. Like its predecessor, this completely revised work illustrates the potential of DNA markers for addressing a wide variety of phylogenetic and evolutionary questions. The volume provides guidance in choosing appropriate techniques, as well as appropriate genes for sequencing, for given levels of systematic inquiry. More than a review of techniques and previous work, Molecular Systematics of Plants II provides a stimulus for developing future research in this rapidly evolving field. Molecular Systematics of Plants II is not only written for systematists (faculty, graduate students, and researchers), but also for evolutionary biologists, botanists, and paleobotanists interested in reviewing current theory and practice in plant molecular systematics.

Download or read book Molecular Systematics of Plants written by Pamela S. Soltis and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 446 pages. Available in PDF, EPUB and Kindle. Book excerpt: The application of molecular techniques is rapidly transforming the study of plant systematics. The precision they offer enables researchers to classify plants that have not been subject to rigorous classification before and thus allows them to obtain a clearer picture of evolutionary relationships. Plant Molecular Systematics is arranged both conceptually and phylogenetically to accommodate the interests not only of general systematists, but also those of people interested in a particular plant family. The first part discusses molecular sequencing; the second reviews restriction site analysis and the sequencing of mitochondrial DNA. A third section details the analysis of ribosomal DNA and chloroplast DNA. The following section introduces model studies involving well-studied families such as the Onagraceae, Compositae and Leguminosae. The book concludes with a section addressing theoretical topics such as data analysis and the question of morphological vs. molecular data.

Download or read book Molecular Systematics of Fishes written by Thomas D. Kocher and published by Elsevier. This book was released on 1997-07-10 with total page 329 pages. Available in PDF, EPUB and Kindle. Book excerpt: Sequenced biological macromolecules have revitalized systematic studies of evolutionary history. Molecular Systematics of Fishes is the first authoritative overview of the theory and application of these sequencing data to fishes. This volume explores the phylogeny of fishes at multiple taxonomic levels, uses methods of analysis of molecular data that apply both within and between fish populations, and employs molecule-based phylogenies to address broader questions of evolution. Targeted readers include ichthyologists, marine scientists, and all students, faculty, and researchers interested in fish evolution and ecology and vertebrate systematics. - Focuses on the phylogeny and evolutionary biology of fishes - Contains phylogenies of fishes at multiple taxonomic levels - Applies molecule-based phylogenies to broader questions of evolution - Includes methods for critique of analysis of molecular data

Download or read book Molecular Systematics written by David M. Hillis and published by Sinauer Associates, Incorporated. This book was released on 1996 with total page 686 pages. Available in PDF, EPUB and Kindle. Book excerpt: Sampling. Project design. Collection and storage of tissues. Molecular techniques. Proteins: isozyme electrophoresis. Chromosomes: molecular cytogenetics. Nucleic acids I: DNA-DNA hybridization. Nucleic acids II: the polymerase chain reaction. Nucleic acids III: analysis of fragments and restriction sites. Nucleic acids IV: sequencing and cloning. Analysis. Intraspecific differentiation. Phylogenetic inference. Applications of molecular systematics: the state of the field and a look to the future.

Download or read book A Mathematical Primer of Molecular Phylogenetics written by Xuhua Xia and published by CRC Press. This book was released on 2020-04-13 with total page 366 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume, A Mathematical Primer of Molecular Phylogenetics, offers a unique perspective on a number of phylogenetic issues that have not been covered in detail in previous publications. The volume provides sufficient mathematical background for young mathematicians and computational scientists, as well as mathematically inclined biology students, to make a smooth entry into the expanding field of molecular phylogenetics. The book will also provide sufficient details for researchers in phylogenetics to understand the workings of existing software packages used. The volume offers comprehensive but detailed numerical illustrations to render difficult mathematical and computational concepts in molecular phylogenetics accessible to a variety of readers with different academic background. The text includes examples of solved problems after each chapter, which will be particularly helpful for fourth-year undergraduates, postgraduates, and postdoctoral students in biology, mathematics and computer sciences. Researchers in molecular biology and evolution will find it very informative as well.

Download or read book MOLECULAR SYSTEMATICS written by Lydeard C and published by Smithsonian. This book was released on 2003-12-17 with total page 312 pages. Available in PDF, EPUB and Kindle. Book excerpt: Leading scientists provide the most up-to-date information.This richly detailed book is the first complete review of molecular systematics and phylogeography of mollusks. Ten chapters cover a full range of issues such as research opportunities, molecules and evolution, bivalve evolution, gastropod evolution, and how mollusks have evolved into so many species. The concluding title in the Smithsonian Series of Comparative Evolutionary Biology, this book brings together experts from around the world. Each explores their topic in a way that reveals not only the evolutionary history of mollusks, but also how evolution operates. Anyone seriously interested in living mollusks, fossilized shells, or evolution will find this book to be an invaluable resource.

Download or read book Molecular Evolution written by Ziheng Yang and published by Oxford University Press. This book was released on 2014 with total page 509 pages. Available in PDF, EPUB and Kindle. Book excerpt: Studies of evolution at the molecular level have experienced phenomenal growth in the last few decades, due to rapid accumulation of genetic sequence data, improved computer hardware and software, and the development of sophisticated analytical methods. The flood of genomic data has generated an acute need for powerful statistical methods and efficient computational algorithms to enable their effective analysis and interpretation. Molecular Evolution: a statistical approach presents and explains modern statistical methods and computational algorithms for the comparative analysis of genetic sequence data in the fields of molecular evolution, molecular phylogenetics, statistical phylogeography, and comparative genomics. Written by an expert in the field, the book emphasizes conceptual understanding rather than mathematical proofs. The text is enlivened with numerous examples of real data analysis and numerical calculations to illustrate the theory, in addition to the working problems at the end of each chapter. The coverage of maximum likelihood and Bayesian methods are in particular up-to-date, comprehensive, and authoritative. This advanced textbook is aimed at graduate level students and professional researchers (both empiricists and theoreticians) in the fields of bioinformatics and computational biology, statistical genomics, evolutionary biology, molecular systematics, and population genetics. It will also be of relevance and use to a wider audience of applied statisticians, mathematicians, and computer scientists working in computational biology.

Download or read book Phylogenetics written by E. O. Wiley and published by John Wiley & Sons. This book was released on 2011-06-07 with total page 444 pages. Available in PDF, EPUB and Kindle. Book excerpt: The long-awaited revision of the industry standard on phylogenetics Since the publication of the first edition of this landmark volume more than twenty-five years ago, phylogenetic systematics has taken its place as the dominant paradigm of systematic biology. It has profoundly influenced the way scientists study evolution, and has seen many theoretical and technical advances as the field has continued to grow. It goes almost without saying that the next twenty-five years of phylogenetic research will prove as fascinating as the first, with many exciting developments yet to come. This new edition of Phylogenetics captures the very essence of this rapidly evolving discipline. Written for the practicing systematist and phylogeneticist, it addresses both the philosophical and technical issues of the field, as well as surveys general practices in taxonomy. Major sections of the book deal with the nature of species and higher taxa, homology and characters, trees and tree graphs, and biogeography—the purpose being to develop biologically relevant species, character, tree, and biogeographic concepts that can be applied fruitfully to phylogenetics. The book then turns its focus to phylogenetic trees, including an in-depth guide to tree-building algorithms. Additional coverage includes: Parsimony and parsimony analysis Parametric phylogenetics including maximum likelihood and Bayesian approaches Phylogenetic classification Critiques of evolutionary taxonomy, phenetics, and transformed cladistics Specimen selection, field collecting, and curating Systematic publication and the rules of nomenclature Providing a thorough synthesis of the field, this important update to Phylogenetics is essential for students and researchers in the areas of evolutionary biology, molecular evolution, genetics and evolutionary genetics, paleontology, physical anthropology, and zoology.

Download or read book Plant Systematics written by Gurcharan Singh and published by CRC Press. This book was released on 2019-06-07 with total page 940 pages. Available in PDF, EPUB and Kindle. Book excerpt: This fourth edition of Plant Systematics is completely revised and updated. It incorporates the updated International Code of Nomenclature for Algae, Fungi and Plants (Shenzhen Code, 2018), the new version of PhyloCode (Beta version of Phylocode 5, 2014), APweb version 14 (September, 2018), revised Angiosperm Phylogeny Group classification (APG IV, 2016), new Pteridophyte Phylogeny Group Classification (PPG I, 2016), besides the updates since the publication of third edition. The book is a blend of classical fundamental aspects and recent developments, especially in the field of molecular systematics, cladistics and computer identification. Special attention has been given to information on botanical nomenclature, identification, molecular systematics and phylogeny of angiosperms. The complicated concepts of phylogeny, taxometrics and cladistics have been explained with a view to providing a comparison between these diverse but interactive fields of study. An attempt has been made to build upon a common example when exploring different methods, especially in procedures of identification, taxometrics and cladistics. The major systems of classification are evaluated critically. Discussion on major families of Pteridophytes, Gymnosperms and Angiosperms, especially those of major phylogenetic interest, form a major portion of this edition. The ebook includes nearly 500 color photographs set out in 36 pages covering plants from different parts of the world. In addition, 305 black & white illustrations have been included to provide a better understanding of the plants covered in the book.

Download or read book The First Two written by Adrian Mallabo and published by . This book was released on 2013-03-01 with total page 238 pages. Available in PDF, EPUB and Kindle. Book excerpt: Stronger than the others, worse than the undead. Adam awakes to discover that he has been miraculously cured of the dreaded zombie virus. He is the First Subject, born from the experiments of a group known as the Charon Initiative. As the first of a new breed of mankind, Adam must struggle to find a place for himself in this strange new world. All he knows about himself is that he is a good man. Then a Second Subject is chosen, and this person may prove to be something very different compared to Adam. The question becomes: Did we ever consider the kind of people we are bringing back from the dead?

Download or read book Micromolecular Evolution Systematics and Ecology written by O.R. Gottlieb and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 183 pages. Available in PDF, EPUB and Kindle. Book excerpt: For several decades botanists have been impressed by the discovery that the distribution of secondary plant substances follows the general lines of plant relationships. However, it soon became clear that little was to be gained from the study of individual compounds and their natural distribu tion. Therefore, more comprehensive studies were attempt ed in which the secondary chemistry of a major plant group was carefully studied and evaluated in the broader context of comparative phytochemistry. Holger Erdtman's admir able work on Coniferae is the foremost example of this kind. Since then, there has been an upswing in the study of the biosynthesis of secondary plant substances and it has become quite customary to make use of biosynthetic knowledge in interpreting chemosystematic evidence. More over, since taxonomists have insisted that use be made of all potentially available evidence for building classifications, it has been claimed that chemosystematics too should con sider the whole array of constituents present in a major taxon. However, in practice it has proved difficult to utilize fully the potential of natural product chemistry and biosynthetic studies for plant systematics and evolution, because bota nists found themselves rather disorientated by the scattered, often hardly accessible chemical literature and the fact that the chemical evidence was difficult for them to evaluate! Although the pioneering work of E. C.

Download or read book Biological Systematics written by Randall T. Schuh and published by Cornell University Press. This book was released on 2011-04-15 with total page 326 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biological Systematics: Principles and Applications draws equally from examples in botany and zoology to provide a modern account of cladistic principles and techniques. It is a core systematics textbook with a focus on parsimony-based approaches for students and biologists interested in systematics and comparative biology. Randall T. Schuh and Andrew V. Z. Brower cover: -the history and philosophy of systematics and nomenclature; -the mechanics and methods of analysis and evaluation of results; -the practical applications of results and wider relevance within biological classification, biogeography, adaptation and coevolution, biodiversity, and conservation; and -software applications. This new and thoroughly revised edition reflects the exponential growth in the use of DNA sequence data in systematics. New data techniques and a notable increase in the number of examples from molecular systematics will be of interest to students increasingly involved in molecular and genetic work.

Download or read book Statistical Methods in Molecular Evolution written by Rasmus Nielsen and published by Springer Science & Business Media. This book was released on 2006-05-06 with total page 503 pages. Available in PDF, EPUB and Kindle. Book excerpt: In the field of molecular evolution, inferences about past evolutionary events are made using molecular data from currently living species. With the availability of genomic data from multiple related species, molecular evolution has become one of the most active and fastest growing fields of study in genomics and bioinformatics. Most studies in molecular evolution rely heavily on statistical procedures based on stochastic process modelling and advanced computational methods including high-dimensional numerical optimization and Markov Chain Monte Carlo. This book provides an overview of the statistical theory and methods used in studies of molecular evolution. It includes an introductory section suitable for readers that are new to the field, a section discussing practical methods for data analysis, and more specialized sections discussing specific models and addressing statistical issues relating to estimation and model choice. The chapters are written by the leaders of field and they will take the reader from basic introductory material to the state-of-the-art statistical methods. This book is suitable for statisticians seeking to learn more about applications in molecular evolution and molecular evolutionary biologists with an interest in learning more about the theory behind the statistical methods applied in the field. The chapters of the book assume no advanced mathematical skills beyond basic calculus, although familiarity with basic probability theory will help the reader. Most relevant statistical concepts are introduced in the book in the context of their application in molecular evolution, and the book should be accessible for most biology graduate students with an interest in quantitative methods and theory. Rasmus Nielsen received his Ph.D. form the University of California at Berkeley in 1998 and after a postdoc at Harvard University, he assumed a faculty position in Statistical Genomics at Cornell University. He is currently an Ole Rømer Fellow at the University of Copenhagen and holds a Sloan Research Fellowship. His is an associate editor of the Journal of Molecular Evolution and has published more than fifty original papers in peer-reviewed journals on the topic of this book. From the reviews: "...Overall this is a very useful book in an area of increasing importance." Journal of the Royal Statistical Society "I find Statistical Methods in Molecular Evolution very interesting and useful. It delves into problems that were considered very difficult just several years ago...the book is likely to stimulate the interest of statisticians that are unaware of this exciting field of applications. It is my hope that it will also help the 'wet lab' molecular evolutionist to better understand mathematical and statistical methods." Marek Kimmel for the Journal of the American Statistical Association, September 2006 "Who should read this book? We suggest that anyone who deals with molecular data (who does not?) and anyone who asks evolutionary questions (who should not?) ought to consult the relevant chapters in this book." Dan Graur and Dror Berel for Biometrics, September 2006 "Coalescence theory facilitates the merger of population genetics theory with phylogenetic approaches, but still, there are mostly two camps: phylogeneticists and population geneticists. Only a few people are moving freely between them. Rasmus Nielsen is certainly one of these researchers, and his work so far has merged many population genetic and phylogenetic aspects of biological research under the umbrella of molecular evolution. Although Nielsen did not contribute a chapter to his book, his work permeates all its chapters. This book gives an overview of his interests and current achievements in molecular evolution. In short, this book should be on your bookshelf." Peter Beerli for Evolution, 60(2), 2006

Download or read book Plant Systematics written by Michael G. Simpson and published by Elsevier. This book was released on 2011-08-09 with total page 603 pages. Available in PDF, EPUB and Kindle. Book excerpt: Plant Systematics is a comprehensive and beautifully illustrated text, covering the most up-to-date and essential paradigms, concepts, and terms required for a basic understanding of plant systematics. This book contains numerous cladograms that illustrate the evolutionary relationships of major plant groups, with an emphasis on the adaptive significance of major evolutionary novelties. It provides descriptions and classifications of major groups of angiosperms, including over 90 flowering plant families; a comprehensive glossary of plant morphological terms, as well as appendices on botanical illustration and plant descriptions. Pedagogy includes review questions, exercises, and references that complement each chapter. This text is ideal for graduate and undergraduate students in botany, plant taxonomy, plant systematics, plant pathology, ecology as well as faculty and researchers in any of the plant sciences. - The Henry Allan Gleason Award of The New York Botanical Garden, awarded for "Outstanding recent publication in the field of plant taxonomy, plant ecology, or plant geography" (2006) - Contains numerous cladograms that illustrate the evolutionary relationships of major plant groups, with an emphasis on the adaptive significance of major evolutionary novelties - Provides descriptions and classifications of major groups of angiosperms, including over 90 flowering plant families - Includes a comprehensive glossary of plant morphological terms as well as appendices on botanical illustration and plant description