Download or read book Investigating the Bioavailability of Terrestrial Organic Matter to Marine Microorganisms written by Lindsey Potts and published by . This book was released on 2022 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: "Terrestrial organic matter is an important source of dissolved organic matter (DOM) to the global ocean, however, the fate and cycling of this DOM is poorly understood. While it is believed that this carbon pool is essential to marine heterotrophic bacteria in pelagic surface waters, several studies attribute variable levels of lability to this DOM fraction. This study attempts to characterize the bioavailability of terrestrial DOM to a marine isolate through carbon isotope analysis of microbially respired carbon dioxide (CO2) using a novel bioreactor system. Potential contributions of background carbon, such as media off-gassing and vitamin additions, were evaluated and characterized to constrain isotopic measurements. Bioreactor incubations using Suwannee River DOM and Vibrio sp. 1A01 yielded rates of carbon respiration rates up to ~0.7 [mu]g C L-1 min-1 and a maximum cell density of ~9.9 x 106 CFU/mL. The [Delta]14C values of respired CO2 fractions were -28.80 to -72.10 suggesting preferential degradation of older organic matter. The [delta]13CCO2 values were -35.30 and -20.90 consistent with degradation of organic matter derived from modern macrophytes as well as aged C3 and C4 plants. The results of this study highlight the utility of carbon isotopes in tracing the origins of labile DOM and shed light on how marine microbes may interact with terrestrial DOM transported to the ocean"--
Download or read book Biogeochemistry of Marine Dissolved Organic Matter written by Dennis A. Hansell and published by Academic Press. This book was released on 2014-10-02 with total page 712 pages. Available in PDF, EPUB and Kindle. Book excerpt: Marine dissolved organic matter (DOM) is a complex mixture of molecules found throughout the world's oceans. It plays a key role in the export, distribution, and sequestration of carbon in the oceanic water column, posited to be a source of atmospheric climate regulation. Biogeochemistry of Marine Dissolved Organic Matter, Second Edition, focuses on the chemical constituents of DOM and its biogeochemical, biological, and ecological significance in the global ocean, and provides a single, unique source for the references, information, and informed judgments of the community of marine biogeochemists. Presented by some of the world's leading scientists, this revised edition reports on the major advances in this area and includes new chapters covering the role of DOM in ancient ocean carbon cycles, the long term stability of marine DOM, the biophysical dynamics of DOM, fluvial DOM qualities and fate, and the Mediterranean Sea. Biogeochemistry of Marine Dissolved Organic Matter, Second Edition, is an extremely useful resource that helps people interested in the largest pool of active carbon on the planet (DOC) get a firm grounding on the general paradigms and many of the relevant references on this topic. Features up-to-date knowledge of DOM, including five new chapters The only published work to synthesize recent research on dissolved organic carbon in the Mediterranean Sea Includes chapters that address inputs from freshwater terrestrial DOM
Download or read book Examining the Bioavailability of Dissolved Organic Matter and Inorganic Nutrients to Heterotrophic Bacteria in Mississippi Coastal Waters written by Katie Grace Carpenter and published by . This book was released on 2010 with total page 150 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Microbial Utilization and Transformation of Dissolved Organic Matter in Aquatic Environments from Streams to the Deep Ocean written by Johanna Sjöstedt and published by Frontiers Media SA. This book was released on 2021-07-28 with total page 255 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book The Chemistry of Microbiomes written by National Academies of Sciences, Engineering, and Medicine and published by National Academies Press. This book was released on 2017-07-19 with total page 133 pages. Available in PDF, EPUB and Kindle. Book excerpt: The 21st century has witnessed a complete revolution in the understanding and description of bacteria in eco- systems and microbial assemblages, and how they are regulated by complex interactions among microbes, hosts, and environments. The human organism is no longer considered a monolithic assembly of tissues, but is instead a true ecosystem composed of human cells, bacteria, fungi, algae, and viruses. As such, humans are not unlike other complex ecosystems containing microbial assemblages observed in the marine and earth environments. They all share a basic functional principle: Chemical communication is the universal language that allows such groups to properly function together. These chemical networks regulate interactions like metabolic exchange, antibiosis and symbiosis, and communication. The National Academies of Sciences, Engineering, and Medicine's Chemical Sciences Roundtable organized a series of four seminars in the autumn of 2016 to explore the current advances, opportunities, and challenges toward unveiling this "chemical dark matter" and its role in the regulation and function of different ecosystems. The first three focused on specific ecosystemsâ€"earth, marine, and humanâ€"and the last on all microbiome systems. This publication summarizes the presentations and discussions from the seminars.
Download or read book The Role of Dissolved Organic Matter in Structuring Microbial Community Composition written by Rachel Elizabeth Sipler and published by . This book was released on 2009 with total page 179 pages. Available in PDF, EPUB and Kindle. Book excerpt: Dissolved organic matter (DOM) is an important source of nutrients in aquatic systems contributing to the growth of phytoplankton and bacteria. The overall response appears to be driven by the phytoplankton and bacteria species present as well as the composition of DOM provided. This dissertation explores the bioavailability of allochthonous and autochthonous DOM sources to, and its affect on, the growth of marine phytoplankton and bacterial community abundance and composition. This research utilizes advanced chemical (electrospray ionization mass spectrometry (ESI-MS)) and molecular (terminal restriction fragment length polymorphism (TRFLP)) techniques to characterize the DOM and microbial community. To investigate the role of allochthonous DOM in phytoplankton growth, DOM from two different riverine sources from watersheds with different land use practices, was supplied to a natural cyanobacteria population. The bioavailability of autochthonous DOM was investigated by supplying DOM produced by a single culture of cyanobacteria to a natural dinoflagellate bloom community. The potential negative effect of an individual autochthonous DOM compound was investigated through the addition of marine toxin, brevetoxin, to three different natural bacterial communities. This dissertation resulted in the first ESI-MS characterization spectra of the DOM associated with three different natural phytoplankton blooms, a culture of cyanobacteria, and two different South Florida rivers. It was also the first study to identify previously uncharacterized allochthonous and autochthonous DOM masses bioavailable to natural marine phytoplankton communities. Bulk level analyses within these experiments quantified lower limits for the bioavailability of allochthonous and autochthonous DOM sources and the relative community response to each of these sources. This dissertation also represents the first molecular evaluation of the bacteria associated with a bloom and the first investigation of the allelopathic properties of brevetoxin. It has discussed and applied the use of ESI-MS to investigate the bioavailability of complex DOM, identified and quantified potential nutrient sources and linked marine toxin production to changes in bacterial community composition.
Download or read book Dynamics and Characterization of Marine Organic Matter written by N. Handa and published by Springer Science & Business Media. This book was released on 2013-03-09 with total page 561 pages. Available in PDF, EPUB and Kindle. Book excerpt: Over the past decade the scientific activities of the Joint Global Ocean Flux Study (JGOFS), which focuses on the role of the oceans in controlling climate change via the transport and storage of greenhouse gases and organic matter, have led to an increased interest in the study of the biogeochemistry of organic matter. There is also a growing interest in global climate fluctuations. This, and the need for a precise assessment of the dynamics of carbon and other bio-elements, has led to a demand for an improved understanding of biogeochemical processes and the chemical characteristics of both particulate and dissolved organic matter in the ocean. A large amount of proxy data has been published describing the changes of the oceanic environment, but qualitative and quantitative estimates of the vertical flux of (proxy) organic compounds have not been well documented. There is thus an urgent need to pursue this line of study and, to this end, this book starts with several papers dealing with the primary production of organic matter in the upper ocean. Thereafter, the book goes on to follow the flux and characterization of particulate organic matter, discussed in relation to the primary production in the euphotic zone and resuspension in the deep waters, including the vertical flux of proxy organic compounds. It goes on to explain the decomposition and transformation of organic matter in the ocean environment due to photochemical and biological agents, and the reactivity of bulk and specific organic compounds, including the air-sea interaction of biogenic gases. The 22 papers in the book reflect the interests of JGOFS and will thus serve as a valuable reference source for future biogeochemical investigations of both bio-elements and organic matter in seawater, clarifying the role of the ocean in global climate change.
Download or read book The Role of Terrestrial Organic Matter in the Lower Aquatic Food Web written by Jennifer Lynne Harfmann and published by . This book was released on 2019 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Terrestrial organic matter (tOM) is a major contributor to global biogeochemical cycling, fundamentally linking pools of terrestrial and marine carbon, and can also influence and be influenced by local biogeochemical processes mediated by the lower aquatic food web. The goal of this research was to assess the interactions between tOM quality and primary consumers (bacteria and zooplankton) in order to constrain places and times where tOM source inputs are most influential in supporting the aquatic food web. Specific objectives included (1) evaluating compositional changes in vascular plant leachate dissolved organic matter (DOM) mediated by microbial and photochemical-microbial degradation, (2) constraining and calibrating vascular plant source biomarkers through microbial incubations, and (3) assessing zooplankton consumption of vascular plant particulates and survival across a variety of particulate organic matter (POM) diets. Microbial and photochemical-microbial incubations of four vascular plant leachates (ponderosa pine, blue oak, mixed annual grasses, mixed tule/cattail) indicated that despite initial variability in vascular plant source composition, degradation of dissolved tOM led to both optical and chemical convergence. Loss of source characteristics suggests that dissolved tOM source endmembers are much less significant than might be expected in dictating downstream microbial bioavailability, and compositional convergence may serve to buffer aquatic ecosystems when riparian landscapes (and subsequent terrestrial inputs) change Constraining dissolved tOM source endmembers is crucial in quantifying pools and fluxes that dictate global biogeochemical budgets. Using endmembers derived from our microbial degradation experiments, we estimated that vascular plant material contributions to Arctic, temperate, and tropical riverine DOM averaged 16%, 48%, and 73%, respectively, supporting that, particularly in low DOM systems, a significant proportion of the DOM pool is unaccounted for by vascular plant biomarkers. Constraining non-vascular (e.g. microbial) endmembers proved more challenging and highlighted that microbial processing of tOM may be characterized by small molecular changes in functional groups rather than remineralization and production of new microbial compounds. While microbial utilization of dissolved tOM is a widely accepted phenomenon, incorporation of particulate tOM into the aquatic food web is less certain. A novel DNA metagenomic sequencing technique was developed to track zooplankton consumption of particulate tOM relative to algal resources. Zooplankton feeding experiments indicated that copepods not only consume particulate tOM (assessed chemically and genetically via gut content) but do so deliberately and confer benefits from it (i.e. increased survival) when other food resources such as phytoplankton are limited. Particulate tOM can therefore act as a lifeline for zooplankton in tidal wetlands or other aquatic systems with high amounts of tOM and low phytoplankton primary productivity.
Download or read book Marine Sedimentary Organic Matter written by Bryan C. Benitez-Nelson and published by . This book was released on 1996 with total page 136 pages. Available in PDF, EPUB and Kindle. Book excerpt: This thesis details two years of research conducted with the guidance and support of three advisors: Dr. J.K. Whelan, Dr. J.S. Seewald and Dr. T.I. Eglinton. Each of the three chapters represents a different, self-contained research project. All of the projects are related to the organic geochemistry of marine sediments, however, this is a fairly encompassing area of study. Chapters 1 and 2 stem from the same experimental study -the use of hydrous-pyrolysis to investigate mechanisms leading to the production of petroleum-related products during kerogen maturation. Chapter 3, on the other hand, utilizes a recently developed technique of isolating and AMS-14C dating individual compounds from complex sedimentary organic mixtures. The samples used in each investigation came from all over the world. The first two chapters utilize ancient marine sediment samples obtained from an outcrop in California (Chpts. 1 and 2) and from a well in Alabama (Chpt. 2). In contrast, recent marine sediment samples were obtained from the Arabian and Black Seas for the third chapter. Several preparative and analytical methods are common to all three studies. Nevertheless, each employ techniques totally unique from one another and from previous investigations. In Chapter 1, for example, X-ray absorption spectroscopy (XANES) is used to determine the speciation of organic sulfur present in kerogen, bitumen, and bulk sediment samples. While Chapter 3 represents the first study in which the 14C ages of individual, known hydrocarbon biomarkers are determined after isolation by Preparative Capillary Gas Chromatography (PCGC). The insights gained by these investigations are discussed in detail in the following chapters. The common thread between the three chapters is that the source of organic matter, the rate at which it is delivered to marine sediments and the depositional environment, all set the stage for kerogen formation and eventual petroleum generation.
Download or read book Aquatic Organic Matter Fluorescence written by Paula G. Coble and published by Cambridge University Press. This book was released on 2014-07-14 with total page 407 pages. Available in PDF, EPUB and Kindle. Book excerpt: A core text on principles, laboratory/field methodologies, and data interpretation for fluorescence applications in aquatic science, for advanced students and researchers.
Download or read book Linkages Between Molecular Composition Bioavailability and Microbial Utilization of Dissolved Organic Matter in the Western Arctic Ocean written by Jenny Davis (Ph. D.) and published by . This book was released on 2007 with total page 268 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Organic Geochemistry written by Michael H. Engel and published by Springer Science & Business Media. This book was released on 2013-11-11 with total page 862 pages. Available in PDF, EPUB and Kindle. Book excerpt: As this is the first general textbook for the field published in over twenty years, the editors have taken great care to make sure coverage is comprehensive. Diagenesis of organic matter, kerogens, exploration for fossil fuels, and many other subjects are discussed in detail to provide faculty and students with a thorough introduction to organic geochemistry.
Download or read book Bioavailability of Contaminants in Soils and Sediments written by National Research Council and published by National Academies Press. This book was released on 2003-05-03 with total page 433 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bioavailability refers to the extent to which humans and ecological receptors are exposed to contaminants in soil or sediment. The concept of bioavailability has recently piqued the interest of the hazardous waste industry as an important consideration in deciding how much waste to clean up. The rationale is that if contaminants in soil and sediment are not bioavailable, then more contaminant mass can be left in place without creating additional risk. A new NRC report notes that the potential for the consideration of bioavailability to influence decision-making is greatest where certain chemical, environmental, and regulatory factors align. The current use of bioavailability in risk assessment and hazardous waste cleanup regulations is demystified, and acceptable tools and models for bioavailability assessment are discussed and ranked according to seven criteria. Finally, the intimate link between bioavailability and bioremediation is explored. The report concludes with suggestions for moving bioavailability forward in the regulatory arena for both soil and sediment cleanup.
Download or read book Marine Organic Matter Biomarkers Isotopes and DNA written by J. K. Volkman and published by Springer Science & Business Media. This book was released on 2006-02-09 with total page 400 pages. Available in PDF, EPUB and Kindle. Book excerpt: The oceans contain a great biodiversity of marine organisms. They include a rich variety of unusual genes and biochemistries and hence a diverse array of organic compounds ranging from colourful carotenoids and chlorophylls to lipids with structures ranging from the simple to the complex. This volume brings together ten chapters on the occurrence and identification of the lipid biomarkers and of pigments in marine waters. It describes how they can be used in conjunction with stable isotopes and molecular biology to ascertain the sources and fate of organic matter (both natural and pollutant) in the sea and underlying sediments. The authors are each experts in their field and the chapters provide both an overview of the state-of-the-art and knowledge gaps together with abundant detail to satisfy the needs of specialists and non-specialists alike.
Download or read book Marine Microorganisms written by Leo M.L. Nollet and published by CRC Press. This book was released on 2016-09-19 with total page 130 pages. Available in PDF, EPUB and Kindle. Book excerpt: The marine environment covers 70% of the earth’s surface and accounts for 98% of the potentially habitable space. The bioactives from marine microorganisms include antibiotic compounds, polysaccharides, inhibitors, enzymes, peptides, and pigments. These are used in various fields of biology that range from nutraceuticals to cosmeceuticals. Recent scientific investigations have revealed that marine microbial compounds exhibit various beneficial biological effects, such as anti-inflammatory, anti-cancer, anti-HIV, anti-hypertensive, and anti-diabetic. Marine Microorganisms: Extraction and Analysis of Bioactive Compounds sheds light on the extraction, clean-up, and detection methods of major compounds from marine organisms. The book includes information on the different classes of marine microorganisms and the different bioactives that can be extracted from bacteria, fungi and microalgae. Divided into 7 chapters, the book covers bioactive marine natural products, such as marine microbes, seaweeds, and marine sponges as potential sources of drug discovery, and focuses on analysis methods of the biocomponents from marine microorganisms. A useful reference tool for researchers and students, this book provides current knowledge about isolation and analysis methods of the bioactives and provides insight into the various bioactives of marine microbes toward nutraceutical and pharmaceutical development.
Download or read book Organic Matter written by Jean K. Whelan and published by Columbia University Press. This book was released on 1992-12-10 with total page 566 pages. Available in PDF, EPUB and Kindle. Book excerpt: Sediments from the world's ocean floors and other water body basins hold a wealth of information about organic life as we know it. Organic Matter: Productivity, Accumulation, and Preservation in Recent and Ancient Sediments addresses focusing on the production, accumulation, and preservation of organic matter in marine and lacustrine sediments. Contributors to this important monograph cover a range of geologic ages from recent times back to the Permian Era, as well as temperature and organic matter types. This resource book will be of interest and benefit to petroleum explorationists and researchers, as well as oceanographers, marine and environmental scientists, sedimentologists, geochemists and paleontologists.
Download or read book Current Topics in Marine Organic Biogeochemical Research written by Carol Arnosti and published by Frontiers Media SA. This book was released on 2021-02-25 with total page 261 pages. Available in PDF, EPUB and Kindle. Book excerpt:
