Download or read book How Does Genomic Variation Underlying Locally Adapted Populations Shift Following a Rapid Environmental Change written by Alexandra Kaye Fraik and published by . This book was released on 2021 with total page 163 pages. Available in PDF, EPUB and Kindle. Book excerpt: With an unprecedented rate of species loss caused by global climate change, emerging infectious disease and anthropogenic disturbance, identifying the adaptive potential of populations in response to various environmental stressors is crucial. Therefore, we need to have a clearer understanding of the interplay of various evolutionary forces on patterns of localized genetic variation following an extreme environmental change. In my dissertation research, I evaluated the impacts of novel selective pressures on the genomic variation underlying locally adapted populations, specifically in Tasmanian devils (Sarcophilus harrisii) and rainbow/steelhead trout (Oncorhynchus mykiss). In Tasmanian devils, I hypothesized that rapid evolutionary response to devil facial tumor disease (DFTD) may impact the distribution of adaptive genetic variation across the landscape. Using sequence capture data from over 3,000 devils collected island-wide, pre and post-DFTD arrival, I found strong selection imposed by DFTD may have swamped out signatures of local adaptation to the abiotic environment. Using transcriptomic data, I found enrichment of gene expression of putative locally adaptive genes. Taken together, these studies suggested that a novel selective pressure, DFTD, reduced functionally significant genetic variation involved in local adaptation to abiotic variables in devil populations. Similarly, I investigated the impacts of dam construction and removal on the evolution and maintenance of diverse life-history forms of rainbow/steelhead trout (O. mykiss). I hypothesized that selective pressures created by dams provided conditions favorable for resident phenotypes, thus selecting against genetic variation associated with the migratory phenotype. Using population genetic analyses, I found descendant steelhead from formerly above and below the dam populations rapidly recolonized the river, suggesting that dams did not significantly impact the evolution of Elwha River O. mykiss. Future work will include testing for shifts in genetic-environmental associations following dam removal to determine if O. mykiss populations became locally adapted to residential conditions following dam construction. The combination of these studies across two different systems in response to different environmental stressors revealed insight into the impacts of extreme changes on local patterns of standing genetic variation.
Download or read book Ecological Genomics written by Christian R. Landry and published by Springer Science & Business Media. This book was released on 2013-11-25 with total page 358 pages. Available in PDF, EPUB and Kindle. Book excerpt: Researchers in the field of ecological genomics aim to determine how a genome or a population of genomes interacts with its environment across ecological and evolutionary timescales. Ecological genomics is trans-disciplinary by nature. Ecologists have turned to genomics to be able to elucidate the mechanistic bases of the biodiversity their research tries to understand. Genomicists have turned to ecology in order to better explain the functional cellular and molecular variation they observed in their model organisms. We provide an advanced-level book that covers this recent research and proposes future development for this field. A synthesis of the field of ecological genomics emerges from this volume. Ecological Genomics covers a wide array of organisms (microbes, plants and animals) in order to be able to identify central concepts that motivate and derive from recent investigations in different branches of the tree of life. Ecological Genomics covers 3 fields of research that have most benefited from the recent technological and conceptual developments in the field of ecological genomics: the study of life-history evolution and its impact of genome architectures; the study of the genomic bases of phenotypic plasticity and the study of the genomic bases of adaptation and speciation.
Download or read book In the Light of Evolution written by National Academy of Sciences and published by . This book was released on 2007 with total page 388 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Arthur M. Sackler Colloquia of the National Academy of Sciences address scientific topics of broad and current interest, cutting across the boundaries of traditional disciplines. Each year, four or five such colloquia are scheduled, typically two days in length and international in scope. Colloquia are organized by a member of the Academy, often with the assistance of an organizing committee, and feature presentations by leading scientists in the field and discussions with a hundred or more researchers with an interest in the topic. Colloquia presentations are recorded and posted on the National Academy of Sciences Sackler colloquia website and published on CD-ROM. These Colloquia are made possible by a generous gift from Mrs. Jill Sackler, in memory of her husband, Arthur M. Sackler.
Download or read book Genetic Management of Fragmented Animal and Plant Populations written by Richard Frankham and published by Oxford University Press. This book was released on 2017 with total page 426 pages. Available in PDF, EPUB and Kindle. Book excerpt: One of the greatest unmet challenges in conservation biology is the genetic management of fragmented populations of threatened animal and plant species. More than a million small, isolated, population fragments of threatened species are likely suffering inbreeding depression and loss of evolutionary potential, resulting in elevated extinction risks. Although these effects can often be reversed by re-establishing gene flow between population fragments, managers very rarely do this. On the contrary, genetic methods are used mainly to document genetic differentiation among populations, with most studies concluding that genetically differentiated populations should be managed separately, thereby isolating them yet further and dooming many to eventual extinction Many small population fragments are going extinct principally for genetic reasons. Although the rapidly advancing field of molecular genetics is continually providing new tools to measure the extent of population fragmentation and its genetic consequences, adequate guidance on how to use these data for effective conservation is still lacking. This accessible, authoritative text is aimed at senior undergraduate and graduate students interested in conservation biology, conservation genetics, and wildlife management. It will also be of particular relevance to conservation practitioners and natural resource managers, as well as a broader academic audience of conservation biologists and evolutionary ecologists.
Download or read book Molecular Approaches in Natural Resource Conservation and Management written by J. Andrew DeWoody and published by Cambridge University Press. This book was released on 2010-06-14 with total page 393 pages. Available in PDF, EPUB and Kindle. Book excerpt: Recent advances in molecular genetics and genomics have been embraced by many in natural resource conservation. Today, several major conservation and management journals are now using 'genetics' editors to deal solely with the influx of manuscripts that employ molecular data. The editors have attempted to synthesize some of the major uses of molecular markers in natural resource management in a book targeted not only at scientists but also at individuals actively making conservation and management decisions. To that end, the text features contributors who are major figures in molecular ecology and evolution - many having published books of their own. The aim is to direct and distil the thoughts of these outstanding scientists by compiling compelling case histories in molecular ecology as they apply to natural resource management.
Download or read book The Gene Ontology Handbook written by Christophe Dessimoz and published by . This book was released on 2020-10-08 with total page 298 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides a practical and self-contained overview of the Gene Ontology (GO), the leading project to organize biological knowledge on genes and their products across genomic resources. Written for biologists and bioinformaticians, it covers the state-of-the-art of how GO annotations are made, how they are evaluated, and what sort of analyses can and cannot be done with the GO. In the spirit of the Methods in Molecular Biology book series, there is an emphasis throughout the chapters on providing practical guidance and troubleshooting advice. Authoritative and accessible, The Gene Ontology Handbook serves non-experts as well as seasoned GO users as a thorough guide to this powerful knowledge system. This work was published by Saint Philip Street Press pursuant to a Creative Commons license permitting commercial use. All rights not granted by the work's license are retained by the author or authors.
Download or read book Landscape Genetics written by Niko Balkenhol and published by John Wiley & Sons. This book was released on 2015-11-09 with total page 298 pages. Available in PDF, EPUB and Kindle. Book excerpt: LANDSCAPE GENETICS: CONCEPTS, METHODS, APPLICATIONS LANDSCAPE GENETICS: CONCEPTS, METHODS, APPLICATIONS Edited by Niko Balkenhol, Samuel A. Cushman, Andrew T. Storfer, Lisette P. Waits Landscape genetics is an exciting and rapidly growing field, melding methods and theory from landscape ecology and population genetics to address some of the most challenging and urgent ecological and evolutionary topics of our time. Landscape genetic approaches now enable researchers to study in detail how environmental complexity in space and time affect gene flow, genetic drift, and local adaptation. However, learning about the concepts and methods underlying the field remains challenging due to the highly interdisciplinary nature of the field, which relies on topics that have traditionally been treated separately in classes and textbooks. In this edited volume, some of the leading experts in landscape genetics provide the first comprehensive introduction to underlying concepts, commonly used methods, and current and future applications of landscape genetics. Consistent with the interdisciplinary nature of the field, the book includes textbook-like chapters that synthesize fundamental concepts and methods underlying landscape genetics (Part 1), chapters on advanced topics that deserve a more in-depth treatment (Part 2), and chapters illustrating the use of concepts and methods in empirical applications (Part 3). Aimed at beginning landscape geneticists and experienced researchers alike, this book will be helpful for all scientists and practitioners interested in learning, teaching, and applying landscape genetics.
Download or read book The Evolution of Population Biology written by Rama S. Singh and published by Cambridge University Press. This book was released on 2004-01-15 with total page 492 pages. Available in PDF, EPUB and Kindle. Book excerpt: This 2004 collection of essays deals with the foundation and historical development of population biology and its relationship to population genetics and population ecology on the one hand and to the rapidly growing fields of molecular quantitative genetics, genomics and bioinformatics on the other. Such an interdisciplinary treatment of population biology has never been attempted before. The volume is set in a historical context, but it has an up-to-date coverage of material in various related fields. The areas covered are the foundation of population biology, life history evolution and demography, density and frequency dependent selection, recent advances in quantitative genetics and bioinformatics, evolutionary case history of model organisms focusing on polymorphisms and selection, mating system evolution and evolution in the hybrid zones, and applied population biology including conservation, infectious diseases and human diversity. This is the third of three volumes published in honour of Richard Lewontin.
Download or read book Molecular Methods for Evolutionary Genetics written by Virginie Orgogozo and published by Humana Press. This book was released on 2011-03-15 with total page 503 pages. Available in PDF, EPUB and Kindle. Book excerpt: We are entering a particularly fruitful period in evolutionary genetics, as rapid technological progress transforms the investigation of genetic variation within and between species. Molecular Methods for Evolutionary Genetics is a collection of advanced molecular biology protocols and general overviews intended to represent the essential methods currently bringing evolutionary genetics to fruition. Divided into six thematic sections, this volume covers methods for characterizing genomes, diverse approaches to enrich DNA for subsets of the genome prior to sequencing, and state-of-the-art protocols for sampling genetic variation for genetic mapping studies and population genetic studies (RAD sequencing, Sequenom, microarrays, etc.). The volume concludes by focusing on methods to study candidate genes, from obtaining their sequences and analyzing their transcripts to experimentally manipulating their activities in vivo. Written in the highly successful Methods in Molecular BiologyTM series format, chapters contain introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and notes on troubleshooting and avoiding known pitfalls. Authoritative and accessible, Molecular Methods for Evolutionary Genetics serves as a rich resource to biologists interested in evolution, whether they be specialists or beginners in molecular biology.
Download or read book Bird Species written by Dieter Thomas Tietze and published by Springer. This book was released on 2018-11-19 with total page 270 pages. Available in PDF, EPUB and Kindle. Book excerpt: The average person can name more bird species than they think, but do we really know what a bird “species” is? This open access book takes up several fascinating aspects of bird life to elucidate this basic concept in biology. From genetic and physiological basics to the phenomena of bird song and bird migration, it analyzes various interactions of birds – with their environment and other birds. Lastly, it shows imminent threats to birds in the Anthropocene, the era of global human impact. Although it seemed to be easy to define bird species, the advent of modern methods has challenged species definition and led to a multidisciplinary approach to classifying birds. One outstanding new toolbox comes with the more and more reasonably priced acquisition of whole-genome sequences that allow causative analyses of how bird species diversify. Speciation has reached a final stage when daughter species are reproductively isolated, but this stage is not easily detectable from the phenotype we observe. Culturally transmitted traits such as bird song seem to speed up speciation processes, while another behavioral trait, migration, helps birds to find food resources, and also coincides with higher chances of reaching new, inhabitable areas. In general, distribution is a major key to understanding speciation in birds. Examples of ecological speciation can be found in birds, and the constant interaction of birds with their biotic environment also contributes to evolutionary changes. In the Anthropocene, birds are confronted with rapid changes that are highly threatening for some species. Climate change forces birds to move their ranges, but may also disrupt well-established interactions between climate, vegetation, and food sources. This book brings together various disciplines involved in observing bird species come into existence, modify, and vanish. It is a rich resource for bird enthusiasts who want to understand various processes at the cutting edge of current research in more detail. At the same time it offers students the opportunity to see primarily unconnected, but booming big-data approaches such as genomics and biogeography meet in a topic of broad interest. Lastly, the book enables conservationists to better understand the uncertainties surrounding “species” as entities of protection.
Download or read book Dispersal in Plants written by Roger Cousens and published by Oxford University Press. This book was released on 2008-03-06 with total page 232 pages. Available in PDF, EPUB and Kindle. Book excerpt: Propagule, evolution.
Download or read book Ecological Speciation written by Patrik Nosil and published by OUP Oxford. This book was released on 2012-03-15 with total page 304 pages. Available in PDF, EPUB and Kindle. Book excerpt: The origin of biological diversity, via the formation of new species, can be inextricably linked to adaptation to the ecological environment. Specifically, ecological processes are central to the formation of new species when barriers to gene flow (reproductive isolation) evolve between populations as a result of ecologically-based divergent natural selection. This process of 'ecological speciation' has seen a large body of particularly focused research in the last 10-15 years, and a review and synthesis of the theoretical and empirical literature is now timely. The book begins by clarifying what ecological speciation is, its alternatives, and the predictions that can be used to test for it. It then reviews the three components of ecological speciation and discusses the geography and genomic basis of the process. A final chapter highlights future research directions, describing the approaches and experiments which might be used to conduct that future work. The ecological and genetic literature is integrated throughout the text with the goal of shedding new insight into the speciation process, particularly when the empirical data is then further integrated with theory.
Download or read book Global Environmental Change written by National Research Council and published by National Academies Press. This book was released on 1991-02-01 with total page 321 pages. Available in PDF, EPUB and Kindle. Book excerpt: Global environmental change often seems to be the most carefully examined issue of our time. Yet understanding the human sideâ€"human causes of and responses to environmental changeâ€"has not yet received sustained attention. Global Environmental Change offers a strategy for combining the efforts of natural and social scientists to better understand how our actions influence global change and how global change influences us. The volume is accessible to the nonscientist and provides a wide range of examples and case studies. It explores how the attitudes and actions of individuals, governments, and organizations intertwine to leave their mark on the health of the planet. The book focuses on establishing a framework for this new field of study, identifying problems that must be overcome if we are to deepen our understanding of the human dimensions of global change, presenting conclusions and recommendations.
Download or read book Darwin Comes to Town written by Menno Schilthuizen and published by Picador. This book was released on 2018-04-03 with total page 305 pages. Available in PDF, EPUB and Kindle. Book excerpt: *Carrion crows in the Japanese city of Sendai have learned to use passing traffic to crack nuts. *Lizards in Puerto Rico are evolving feet that better grip surfaces like concrete. *Europe’s urban blackbirds sing at a higher pitch than their rural cousins, to be heardover the din of traffic. How is this happening? Menno Schilthuizen is one of a growing number of “urban ecologists” studying how our manmade environments are accelerating and changing the evolution of the animals and plants around us. In Darwin Comes to Town, he takes us around the world for an up-close look at just how stunningly flexible and swift-moving natural selection can be. With human populations growing, we’re having an increasing impact on global ecosystems, and nowhere do these impacts overlap as much as they do in cities. The urban environment is about as extreme as it gets, and the wild animals and plants that live side-by-side with us need to adapt to a whole suite of challenging conditions: they must manage in the city’s hotter climate (the “urban heat island”); they need to be able to live either in the semidesert of the tall, rocky, and cavernous structures we call buildings or in the pocket-like oases of city parks (which pose their own dangers, including smog and free-rangingdogs and cats); traffic causes continuous noise, a mist of fine dust particles, and barriers to movement for any animal that cannot fly or burrow; food sources are mainly human-derived. And yet, as Schilthuizen shows, the wildlife sharing these spaces with us is not just surviving, but evolving ways of thriving. Darwin Comes toTown draws on eye-popping examples of adaptation to share a stunning vision of urban evolution in which humans and wildlife co-exist in a unique harmony. It reveals that evolution can happen far more rapidly than Darwin dreamed, while providing a glimmer of hope that our race toward over population might not take the rest of nature down with us.
Download or read book Eco evolutionary Dynamics written by Andrew P. Hendry and published by Princeton University Press. This book was released on 2020-06-09 with total page 410 pages. Available in PDF, EPUB and Kindle. Book excerpt: In recent years, scientists have realized that evolution can occur on timescales much shorter than the 'long lapse of ages' emphasized by Darwin - in fact, evolutionary change is occurring all around us all the time. This work provides an authoritative and accessible introduction to eco-evolutionary dynamics, a cutting-edge new field that seeks to unify evolution and ecology into a common conceptual framework focusing on rapid and dynamic environmental and evolutionary change.
Download or read book Climate Change and Indigenous Peoples in the United States written by Julie Koppel Maldonado and published by Springer. This book was released on 2014-04-05 with total page 178 pages. Available in PDF, EPUB and Kindle. Book excerpt: With a long history and deep connection to the Earth’s resources, indigenous peoples have an intimate understanding and ability to observe the impacts linked to climate change. Traditional ecological knowledge and tribal experience play a key role in developing future scientific solutions for adaptation to the impacts. The book explores climate-related issues for indigenous communities in the United States, including loss of traditional knowledge, forests and ecosystems, food security and traditional foods, as well as water, Arctic sea ice loss, permafrost thaw and relocation. The book also highlights how tribal communities and programs are responding to the changing environments. Fifty authors from tribal communities, academia, government agencies and NGOs contributed to the book. Previously published in Climatic Change, Volume 120, Issue 3, 2013.
Download or read book Adaptive Genetic Variation in the Wild written by Timothy A. Mousseau and published by Oxford University Press. This book was released on 2000-01-13 with total page 276 pages. Available in PDF, EPUB and Kindle. Book excerpt: Two of the great mysteries of biology yet to be explored concern the distribution and abundance of genetic variation in natural populations and the genetic architecture of complex traits. These are tied together by their relationship to natural selection and evolutionary history, and some of the keys to disclosing these secrets lie in the study of wild organisms in their natural environments. This book, featuring a superb selection of papers from leading authors, summarizes the state of current understanding about the extent of genetic variation within wild populations and the ways to monitor such variation. It proposes the idea that a fundamental objective of evolutionary ecology is necessary to predict organism, population, community, and ecosystem response to environmental change. In fact, the overall theme of the papers centers around the expression of genetic variation and how it is shaped by the action of natural selection in the natural environment. Patterns of adaptation in the past and the genetic basis of traits likely to be under selection in a dynamically changing environment is discussed along with a wide variety of techniques to test for genetic variation and its consequences, ranging from classical demography to the use of molecular markers. This book is perfect for professionals and graduate students in genetics, biology, ecology, conservation biology, and evolution.
