Download or read book Genetic Interactions in Marine Bacterial Communities written by Cecilia Dahlberg and published by . This book was released on 1998 with total page 128 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Aquatic Microbial Communities written by John Cairns and published by . This book was released on 1977 with total page 720 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book The New Science of Metagenomics written by National Research Council and published by National Academies Press. This book was released on 2007-06-24 with total page 170 pages. Available in PDF, EPUB and Kindle. Book excerpt: Although we can't usually see them, microbes are essential for every part of human life-indeed all life on Earth. The emerging field of metagenomics offers a new way of exploring the microbial world that will transform modern microbiology and lead to practical applications in medicine, agriculture, alternative energy, environmental remediation, and many others areas. Metagenomics allows researchers to look at the genomes of all of the microbes in an environment at once, providing a "meta" view of the whole microbial community and the complex interactions within it. It's a quantum leap beyond traditional research techniques that rely on studying-one at a time-the few microbes that can be grown in the laboratory. At the request of the National Science Foundation, five Institutes of the National Institutes of Health, and the Department of Energy, the National Research Council organized a committee to address the current state of metagenomics and identify obstacles current researchers are facing in order to determine how to best support the field and encourage its success. The New Science of Metagenomics recommends the establishment of a "Global Metagenomics Initiative" comprising a small number of large-scale metagenomics projects as well as many medium- and small-scale projects to advance the technology and develop the standard practices needed to advance the field. The report also addresses database needs, methodological challenges, and the importance of interdisciplinary collaboration in supporting this new field.
Download or read book Chemistry and Biochemistry of B12 written by Ruma Banerjee and published by John Wiley & Sons. This book was released on 1999-11-03 with total page 960 pages. Available in PDF, EPUB and Kindle. Book excerpt: A Definitive New Reference for the Latest Advances in B_12 Chemistry and Biochemistry Over the past decade, the field of B_12 research has been revolutionized by such major breakthroughs as the unraveling of the entire biosynthetic pathway for this important vitamin. This comprehensive compendium surveys the wealth of information that has accumulated, covering in one volume virtually all aspects of the field-from physical and inorganic chemistry to enzymology, microbiology, medicine, and diagnostic and therapeutic applications. Edited by Dr. Ruma Banerjee, a highly respected and active member of the B_12 community, this work provides B_12 researchers with a dependable and up-to-date reference on the subject. Leading authorities from five continents explore such new areas as the structural biology of B_12-dependent enzymes, free-radical-mediated reaction mechanisms, biosynthesis, and much more. The role of B_12 in nutrition and disease, and B_12 transport, are also thoroughly examined. Complete with color illustrations and extensive references, Chemistry and Biochemistry of B_12 is a one-of-a-kind resource for biochemists, biophysicists, spectroscopists, microbiologists, molecular biologists, and anyone with an interest in "nature's most beautiful cofactor."
Download or read book Microbial Ecology of the Oceans written by Josep M. Gasol and published by John Wiley & Sons. This book was released on 2018-01-31 with total page 663 pages. Available in PDF, EPUB and Kindle. Book excerpt: The newly revised and updated third edition of the bestselling book on microbial ecology in the oceans The third edition of Microbial Ecology of the Oceans features new topics, as well as different approaches to subjects dealt with in previous editions. The book starts out with a general introduction to the changes in the field, as well as looking at the prospects for the coming years. Chapters cover ecology, diversity, and function of microbes, and of microbial genes in the ocean. The biology and ecology of some model organisms, and how we can model the whole of the marine microbes, are dealt with, and some of the trophic roles that have changed in the last years are discussed. Finally, the role of microbes in the oceanic P cycle are presented. Microbial Ecology of the Oceans, Third Edition offers chapters on The Evolution of Microbial Ecology of the Ocean; Marine Microbial Diversity as Seen by High Throughput Sequencing; Ecological Significance of Microbial Trophic Mixing in the Oligotrophic Ocean; Metatranscritomics and Metaproteomics; Advances in Microbial Ecology from Model Marine Bacteria; Marine Microbes and Nonliving Organic Matter; Microbial Ecology and Biogeochemistry of Oxygen-Deficient Water Columns; The Ocean’s Microscale; Ecological Genomics of Marine Viruses; Microbial Physiological Ecology of The Marine Phosphorus Cycle; Phytoplankton Functional Types; and more. A new and updated edition of a key book in aquatic microbial ecology Includes widely used methodological approaches Fully describes the structure of the microbial ecosystem, discussing in particular the sources of carbon for microbial growth Offers theoretical interpretations of subtropical plankton biogeography Microbial Ecology of the Oceans is an ideal text for advanced undergraduates, beginning graduate students, and colleagues from other fields wishing to learn about microbes and the processes they mediate in marine systems.
Download or read book The Social Biology of Microbial Communities written by Institute of Medicine and published by National Academies Press. This book was released on 2013-01-10 with total page 633 pages. Available in PDF, EPUB and Kindle. Book excerpt: Beginning with the germ theory of disease in the 19th century and extending through most of the 20th century, microbes were believed to live their lives as solitary, unicellular, disease-causing organisms . This perception stemmed from the focus of most investigators on organisms that could be grown in the laboratory as cellular monocultures, often dispersed in liquid, and under ambient conditions of temperature, lighting, and humidity. Most such inquiries were designed to identify microbial pathogens by satisfying Koch's postulates.3 This pathogen-centric approach to the study of microorganisms produced a metaphorical "war" against these microbial invaders waged with antibiotic therapies, while simultaneously obscuring the dynamic relationships that exist among and between host organisms and their associated microorganisms-only a tiny fraction of which act as pathogens. Despite their obvious importance, very little is actually known about the processes and factors that influence the assembly, function, and stability of microbial communities. Gaining this knowledge will require a seismic shift away from the study of individual microbes in isolation to inquiries into the nature of diverse and often complex microbial communities, the forces that shape them, and their relationships with other communities and organisms, including their multicellular hosts. On March 6 and 7, 2012, the Institute of Medicine's (IOM's) Forum on Microbial Threats hosted a public workshop to explore the emerging science of the "social biology" of microbial communities. Workshop presentations and discussions embraced a wide spectrum of topics, experimental systems, and theoretical perspectives representative of the current, multifaceted exploration of the microbial frontier. Participants discussed ecological, evolutionary, and genetic factors contributing to the assembly, function, and stability of microbial communities; how microbial communities adapt and respond to environmental stimuli; theoretical and experimental approaches to advance this nascent field; and potential applications of knowledge gained from the study of microbial communities for the improvement of human, animal, plant, and ecosystem health and toward a deeper understanding of microbial diversity and evolution. The Social Biology of Microbial Communities: Workshop Summary further explains the happenings of the workshop.
Download or read book Microbial Symbiosis of Marine Sessile Hosts Diversity Function and Applications written by Suhelen Egan and published by Frontiers Media SA. This book was released on 2015-12-21 with total page 110 pages. Available in PDF, EPUB and Kindle. Book excerpt: Modern molecular -omics tools (metagenomics, metaproteomics etc.) have greatly contributed to the rapid advancement of our understanding of microbial diversity and function in the world’s oceans. These tools are now increasingly applied to host-associated environments to describe the symbiotic microbiome and obtain a holistic view of marine host-microbial interactions. Whilst all eukaryotic hosts are likely to benefit from their microbial associates, marine sessile eukaryotes, including macroalgae, seagrasses and various invertebrates (sponges, acidians, corals, hydroids etc), rely in particular on the function of their microbiome. For example, marine sessile eukaryotes are under constant grazing, colonization and fouling pressure from the millions of micro- and macroorganisms in the surrounding seawater. Host-associated microorganisms have been shown to produce secondary metabolites as defense molecules against unwanted colonization or pathogens, thus having an important function in host health and survival. Similarly microbial symbionts of sessile eukaryotes are often essential players in local nutrient cycling thus benefiting both the host and the surrounding ecosystem. Various research fields have contributed to generating knowledge of host-associated systems, including microbiology, biotechnology, molecular biology, ecology, evolution and biotechnology. Through a focus on model marine sessile host systems we believe that new insight into the interactions between host and microbial symbionts will be obtained and important areas of future research will be identified. This research topic includes original research, review and opinion articles that bring together the knowledge from different aspects of biology and highlight advances in our understanding of the diversity and function of the microbiomes on marine sessile hosts.
Download or read book Metabolic Interactions Between Bacteria and Phytoplankton written by Xavier Mayali and published by Frontiers Media SA. This book was released on 2018-06-06 with total page 227 pages. Available in PDF, EPUB and Kindle. Book excerpt: The cycling of energy and elements in aquatic environments is controlled by the interaction of autotrophic and heterotrophic processes. In surface waters of lakes, rivers, and oceans, photosynthetic microalgae and cyanobacteria fix carbon dioxide into organic matter that is then metabolized by heterotrophic bacteria (and perhaps archaea). Nutrients are remineralized by heterotrophic processes and subsequently enable phototrophs to grow. The organisms that comprise these two major ecological guilds are numerous in both numbers and in their genetic diversity, leading to a vast array of physiological and chemical responses to their environment and to each other. Interactions between bacteria and phytoplankton range from obligate to facultative, as well as from mutualistic to parasitic, and can be mediated by cell-to-cell attachment or through the release of chemicals. The contributions to this Research Topic investigate direct or indirect interactions between bacteria and phytoplankton using chemical, physiological, and/or genetic approaches. Topics include nutrient and vitamin acquisition, algal pathogenesis, microbial community structure during algal blooms or in algal aquaculture ponds, cell-cell interactions, chemical exudation, signaling molecules, and nitrogen exchange. These studies span true symbiosis where the interaction is evolutionarily derived, as well as those of indirect interactions such as bacterial incorporation of phytoplankton-produced organic matter and man-made synthetic symbiosis/synthetic mutualism.
Download or read book The Marine Microbiome written by Lucas J. Stal and published by Springer. This book was released on 2016-06-03 with total page 501 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book describes the state-of-the-art concerning the ‘marine microbiome’ and its uses in biotechnology. The first part discusses the diversity and ecology of marine microorganisms and viruses, including all three domains of life: Bacteria, Archaea, and Eukarya. It discusses whether marine microorganisms exist and, if so, why they might be unique. The second part presents selected marine habitats, their inhabitants and how they influence biogeochemical cycles, while the third discusses the utilization of marine microbial resources, including legal aspects, dissemination, and public awareness. The marine microbiome is the total of microorganisms and viruses in the ocean and seas and in any connected environment, including the seafloor and marine animals and plants. The diversity of microbial life remains unquantified and largely unknown, and could represent a hidden treasure for human society. Accordingly, this book is also intended to connect academics and industry, providing essential information for microbiologists from both fields.
Download or read book Socio Ecology of Microbes in a Changing Ocean written by Matthias Wietz and published by Frontiers Media SA. This book was released on 2019-08-02 with total page 209 pages. Available in PDF, EPUB and Kindle. Book excerpt: Socio-ecological interactions between microbes and associated organisms are integral elements of marine ecosystem dynamics. This Research Topic combines sixteen papers on interactions across the major domains of marine life, including prokaryotes, phytoplankton, macroalgae, cnidarians, viruses and fungi. These studies offer exciting insights into microbial cooperation and competition, holobiont ecology, interkingdom signaling, chemical microdiversity, and biogeography. Understanding such network processes is essential for the interpretation of ecosystem functioning and biogeochemical events, particularly in the wake of climate change.
Download or read book Microbial Interactions in the North Pacific Ocean written by Phillip Jackson Gainer and published by . This book was released on 2018 with total page 161 pages. Available in PDF, EPUB and Kindle. Book excerpt: A majority of Earth’s surface is covered by the marine ecosystem. This ecosystem is characterized by the numerical dominance of microbes, both eukaryotic and prokaryotic and their infecting viruses. As the basis of the food web in marine systems these members of the microbial community are vital to the function of the planet. Despite their noted importance, the microbial communities in many oceanic regions are largely uncharacterized due to geographic isolation, including the largest oceanic basin on the planet, the North Pacific Ocean. Basin scale studies of the North Pacific have primarily focused on characterization of abundance and diversity of bacteria and viruses. Interactions between these microbial constituents have been largely unexplored on a basin scale. As such, this body of work aims to generate hypotheses on the influence that biotic interactions have on microbial community structure and evolution on a basin scale. First, the role biotic interactions responsible for shaping virus abundances and production rates in the North Pacific Ocean were examined. We found that virus abundance and production rates correlated to bacterial taxa that are enriched in particle associated communities, indicating that particles may serve as sites of increased viral activity in the North Pacific Ocean. Secondly, we utilized network analysis to explore inferred bacterial co-occurrences within the North Pacific Basin. We found that diverse taxa participate in at least one significant co-occurrence with another microbe within this basin. Further, network topology parameters, such as high connectance and low modularity, proposed to be hallmarks of community stability differed regionally, indicating that the North Pacific Subtropical Gyre may be more robust to environmental changes. Finally, we developed an assay to screen for Synechococcus WH7803 transposon mutants that are resistant to a co-occurring cyanomyovirus, to identify genes necessary for lytic viral infection. Characterization of these genes will allow for a more holistic understanding of the interactions between this cyanobacterium and its infecting viruses in the natural environment. These findings highlight the importance of considering interactions between microbial entities in the marine system in understanding the functioning of microbial communities in the North Pacific basin.
Download or read book Microbiome Host Interactions written by D. Dhanasekaran and published by CRC Press. This book was released on 2021-04-01 with total page 863 pages. Available in PDF, EPUB and Kindle. Book excerpt: Microbiota are a promising and fascinating subject in biology because they integrate the microbial communities in humans, animals, plants, and the environment. In humans, microbiota are associated with the gut, skin, and genital, oral, and respiratory organs. The plant microbial community is referred to as "holobiont," and it is influential in the maintenance and health of plants, which themselves play a role in animal health and the environment. The contents of Microbiome-Host Interactions cover all areas as well as new research trends in the fields of plant, animal, human, and environmental microbiome interactions. The book covers microbiota in polar soil environments, in health and disease, in Caenorhabditis elegans, and in agroecosystems, as well as in rice root and actinorhizal root nodules, speleothems, and marine shallow-water hydrothermal vents. Moreover, this book provides comprehensive accounts of advanced next-generation DNA sequencing, metagenomic techniques, high-throughput 16S rRNA sequencing, and understanding nucleic acid sequence data from fungal, algal, viral, bacterial, cyanobacterial, actinobacterial, and archaeal communities using QIIME software (Quantitative Insights into Microbial Ecology). FEATURES Summarizes recent insight in microbiota and host interactions in distinct habitats, including Antarctic, hydrothermal vents, speleothems, oral, skin, gut, feces, reproductive tract, soil, root, root nodules, forests, and mangroves Illustrates the high-throughput amplicon sequencing, computational techniques involved in the microbiota analysis, downstream analysis and visualization, and multivariate analysis commonly used for microbiome analysis Describes probiotics and prebiotics in the composition of the gut microbiota, skin microbiome impact in dermatologic disease prevention, and microbial communities in the reproductive tract of humans and animals Presents information in a reachable way for students, teachers, researchers, microbiologists, computational biologists, and other professionals who are interested in strengthening or enlarging their knowledge about microbiome analysis with next-generation DNA sequencing in the different branches of the sciences
Download or read book Anthropogenic Impacts on the Microbial Ecology and Function of Aquatic Environments written by Maurizio Labbate and published by Frontiers Media SA. This book was released on 2016-09-06 with total page 250 pages. Available in PDF, EPUB and Kindle. Book excerpt: Aquatic ecosystems are currently experiencing unprecedented levels of impact from human activities including over-exploitation of resources, habitat destruction, pollution and the influence of climate change. The impacts of these activities on the microbial ecology of aquatic environments are only now beginning to be defined. One of the many implications of environmental degradation and climate change is the geographical expansion of disease- causing microbes such as those from the Vibrio genus. Elevating sea surface temperatures correlate with increasing Vibrio numbers and disease in marine animals (e.g. corals) and humans. Contamination of aquatic environments with heavy metals and other pollutants affects microbial ecology with downstream effects on biogeochemical cycles and nutrient turnover. Also of importance is the pollution of aquatic environments with antibiotics, resistance genes and the mobile genetic elements that house resistance genes from human and animal waste. Such contaminated environments act as a source of resistance genes long after an antibiotic has ceased being used in the community. Environments contaminated with mobile genetic elements that are adapted to human commensals and pathogens function to capture new resistance genes for potential reintroduction back into clinical environments. This research topic encompasses these diverse topics and describes the affect(s) of human activity on the microbial ecology and function in aquatic environments and, describes methods of restoration and for modelling disturbances.
Download or read book Marine microbial symbioses Host microbe interaction holobiont s adaptation to niches and global climate change written by Zhiyong Li and published by Frontiers Media SA. This book was released on 2024-05-14 with total page 154 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Interactions Between Macro and Microorganisms in Marine Sediments written by and published by American Geophysical Union. This book was released on 2005-01-14 with total page 391 pages. Available in PDF, EPUB and Kindle. Book excerpt: Marine sediments support complex interactions between macro-and microorganisms that have global implications for carbon and nutrient cycles. What is the state of the science on such interactions from coastal and estuarine environments to the deep sea? How does such knowledge effect environmental management? And what does future research hold in store for scientists, engineers, resource managers, and educators?Interactions between Macro- and Microorganisms in Marine Sediments responds to these questions, and more, by focusing on:? Interactions between plants, microorganisms, and marine sediment? Interactions between animals, microorganisms, and marine sediment? Interactions between macro- and microorganisms and the structuring of benthic communities? Impact of macrobenthic activity on microbially-mediated geochemical cycles in sediments? Conceptual and numeric models of diagenesis that incorporate interactions between macro- and microorganismsHere is an authoritative overview of the research, experimentation and modeling approaches now in use in our rapidly evolving understanding of life in marine sediments.
Download or read book The Functional Contributions of Integrated Phages to Marine Bacterial Communities written by and published by . This book was released on 2014 with total page 60 pages. Available in PDF, EPUB and Kindle. Book excerpt: Lysogenic conversion genes are derived from integrated phage genomes and the expression of these genes contributes to bacterial host fitness. These genes are not well investigated in marine bacteria nor at the level of the bacterial community. The anoxic layer of the Anoxic Marine Zone (AMZ) off the coast of northern Chile presents a habitat barrier for macrofauna and is the habitat of a thriving microbial community. The AMZ viral community is thought to be dominated by integrated, temperate bacteriophages. Prophage infection appears to be prevalent in the anoxic region of the AMZ; therefore, the lysogenic conversion gene functions were hypothesized to enhance the ability of the AMZ bacteria to persist in the anoxic habitat. Metagenomic samples from the AMZ were compared with samples from a productive, oxic surface environment in Meta Verde (MV), Brazil in which the viral community was expected to be dominated by lytic phages. Total community DNA from the bacterial, free-floating phage and Mitomycin C-induced phage fractions were extracted and pyrosequenced. Eight metagenomes with a total of 1.1 billion bp contained in 3.1 million sequences were obtained. Taxonomic and functional differences between the free-floating and integrated phage communities were found in the three locations, suggesting distinct lytic and temperate phage communities. AMZ prophage genotypes were obtained by cross-assembly of the bacterial, free-floating and integrated phage metagenomes. Functions of the potential lysogenic conversion genes in the AMZ location included those related to chemotaxis. The genetic information of the prophage community provides a natural lens to focus on the genes that are relevant to the bacterial community..
Download or read book Genetic Interactions Among Microorganisms in the Natural Environment written by E.M.H. Wellington and published by Elsevier. This book was released on 2013-10-22 with total page 314 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book gives an overview of gene transfer and stability in those aquatic and terrestrial environments where bacteria and fungi can survive and interact genetically. It examines the role played by sex between microbes in the evolution of populations and their survival. Special emphasis is placed on methodology, including the analysis by novel techniques of genetic material extracted directly from soils, rivers and lakes. The natural spread of antibiotic resistance and the safe use of genetically manipulated microbes are matters of considerable scientific, medical and public concern upon which the investigations presented here have direct bearing. This unique collection will be of value to specialist researchers in applied microbiology, ecology and biotechnology as well as biomedical scientists interested in the environmental risks of genetic engineering.
