Download or read book Evolutionary Systems Biology written by Orkun S. Soyer and published by Springer Science & Business Media. This book was released on 2012-07-23 with total page 459 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book aims to introduce the reader to the emerging field of Evolutionary Systems Biology, which approaches classical systems biology questions within an evolutionary framework. An evolutionary approach might allow understanding the significance of observed diversity, uncover “evolutionary design principles” and extend predictions made in model organisms to others. In addition, evolutionary systems biology can generate new insights into the adaptive landscape by combining molecular systems biology models and evolutionary simulations. This insight can enable the development of more detailed mechanistic evolutionary hypotheses.
Download or read book Evolutionary Systems Biology written by Anton Crombach and published by Springer Nature. This book was released on 2021-08-05 with total page 299 pages. Available in PDF, EPUB and Kindle. Book excerpt: This new edition captures the advances made in the field of evolutionary systems biology since the publication of the first edition. The first edition focused on laying the foundations of evolutionary systems biology as an interdisciplinary field, where a way of thinking and asking questions is combined with a wide variety of tools, both experimental and theoretical/computational. Since publication of the first edition, evolutionary systems biology is now a well-known term describing this growing field. The new edition provides an overview of the current status and future developments of this interdisciplinary field. Chapters highlight several key achievements from the last decade and outline exciting new developments, including an understanding of the interplay between complexity and predictability in evolutionary systems, new viewpoints and methods to study organisms in evolving populations at the level of the genome, gene regulatory network, and metabolic network, and better analysis and modeling techniques that will open new avenues of scientific inquiry.
Download or read book Systems Evolutionary Biology written by Bor-Sen Chen and published by Academic Press. This book was released on 2018-02-03 with total page 390 pages. Available in PDF, EPUB and Kindle. Book excerpt: Systems Evolutionary Biology: Biological Network Evolution Theory, Stochastic Evolutionary Game Strategies, and Applications to Systems Synthetic Biology discusses the evolutionary game theory and strategies of nonlinear stochastic biological networks under random genetic variations and environmental disturbances and their application to systematic synthetic biology design. The book provides more realistic stochastic biological system models to mimic the real biological systems in evolutionary process and then introduces network evolvability, stochastic evolutionary game theory and strategy based on nonlinear stochastic networks in evolution. Readers will find remarkable, revolutionary information on genetic evolutionary biology that be applied to economics, engineering and bioscience. Explains network fitness, network evolvability and network robustness of biological networks from the systematic perspective Discusses the evolutionary noncooperative and cooperative game strategies of biological networks Offers detailed diagrams to help readers understand biological networks, their systematic behaviors and the simulational results of evolutionary biological networks Includes examples in every chapter with computational simulation to illustrate the solution procedure of evolutionary theory, strategy and results
Download or read book Evolutionary Computation Machine Learning and Data Mining in Bioinformatics written by Elena Marchiori and published by Springer Science & Business Media. This book was released on 2007-04-02 with total page 311 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 5th European Conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics, EvoBIO 2007, held in Valencia, Spain, April 2007. Coverage brings together experts in computer science with experts in bioinformatics and the biological sciences. It presents contributions on fundamental and theoretical issues along with papers dealing with different applications areas.
Download or read book Principles of Evolution written by Jonathan Bard and published by Garland Science. This book was released on 2016-09-23 with total page 375 pages. Available in PDF, EPUB and Kindle. Book excerpt: Principles of Evolution covers all aspects of the subject. Following an introductory section that provides necessary background, it has chapters on the evidence for evolution that cover the fossil record, DNA-sequence homologies, and protein homologies (evo-devo). It also includes a full history of life from the first universal common ancestor, through the rise of the eukaryote and on to the major groups of phyla. This section is followed by one on the mechanism of evolution with chapters on variation, selection and speciation. The main part of the book ends with a chapter on human evolution and this is followed by appendices that expand on the making of fossils, the history of the subject and creationism. What marks this book as different from others on evolution is its systems-biology perspective. This new area focuses on the role of protein networks and on multi-level complexity, and is used in three contexts. First, most biological activity is driven by such networks and this has direct implications for understanding evo-devo and for seeing how variation is initiated, mainly during embryogenesis. Second, it provides the natural language for discussing phylogenetics. Third, evolutionary change involves events at levels ranging from the genome to the ecosystem and systems biology provides a context for integrating material of this complexity. The book assumes a basic grounding in biology but little mathematics as the difficult subject of evolutionary population genetics is mainly covered qualitatively, with major results being discussed and used rather than derived. Principles of Evolution will be an interesting and thought-provoking text for undergraduates and graduates across the biological sciences.
Download or read book Biology s First Law written by Daniel W. McShea and published by University of Chicago Press. This book was released on 2010-07-15 with total page 186 pages. Available in PDF, EPUB and Kindle. Book excerpt: Life on earth is characterized by three striking phenomena that demand explanation: adaptation—the marvelous fit between organism and environment; diversity—the great variety of organisms; and complexity—the enormous intricacy of their internal structure. Natural selection explains adaptation. But what explains diversity and complexity? Daniel W. McShea and Robert N. Brandon argue that there exists in evolution a spontaneous tendency toward increased diversity and complexity, one that acts whether natural selection is present or not. They call this tendency a biological law—the Zero-Force Evolutionary Law, or ZFEL. This law unifies the principles and data of biology under a single framework and invites a reconceptualization of the field of the same sort that Newton’s First Law brought to physics. Biology’s First Law shows how the ZFEL can be applied to the study of diversity and complexity and examines its wider implications for biology. Intended for evolutionary biologists, paleontologists, and other scientists studying complex systems, and written in a concise and engaging format that speaks to students and interdisciplinary practitioners alike, this book will also find an appreciative audience in the philosophy of science.
Download or read book Creative Evolutionary Systems written by Peter Bentley and published by Morgan Kaufmann. This book was released on 2002 with total page 618 pages. Available in PDF, EPUB and Kindle. Book excerpt: Written for computer scientists and students, and computer literate artists, designers and specialists in evolutionary computation, this text brings together the most advanced work in the use of evolutionary computation for creative results.
Download or read book Evolutionary Systems written by G. Vijver and published by Springer Science & Business Media. This book was released on 2013-04-17 with total page 442 pages. Available in PDF, EPUB and Kindle. Book excerpt: The three well known revolutions of the past centuries - the Copernican, the Darwinian and the Freudian - each in their own way had a deflating and mechanizing effect on the position of humans in nature. They opened up a richness of disillusion: earth acquired a more modest place in the universe, the human body and mind became products of a long material evolutionary history, and human reason, instead of being the central, immaterial, locus of understanding, was admitted into the theater of discourse only as a materialized and frequently out-of-control actor. Is there something objectionable to this picture? Formulated as such, probably not. Why should we resist the idea that we are in certain ways, and to some degree, physically, biologically or psychically determined? Why refuse to acknowledge the fact that we are materially situated in an ever evolving world? Why deny that the ways of inscription (traces of past events and processes) are co-determinative of further "evolutionary pathways"? Why minimize the idea that each intervention, of each natural being, is temporally and materially situated, and has, as such, the inevitable consequence of changing the world? The point is, however, that there are many, more or less radically different, ways to consider the "mechanization" of man and nature. There are, in particular, many ways to get the message of "material and evolutionary determination", as well as many levels at which this determination can be thought of as relevant or irrelevant.
Download or read book The Comparative Method in Evolutionary Biology written by Paul H. Harvey and published by . This book was released on 1998 with total page 262 pages. Available in PDF, EPUB and Kindle. Book excerpt: From Darwin onward, it has been second nature for evolutionary biologists to think comparatively, because comparisons establish the generality of evolutionary phenomena. Do large genomes slow down development? What lifestyles select for large brains? Are extinction rates related to body size? These are all questions for the comparative method, and this book is about how such questions can be answered. It examines how the comparative method complements other approaches, identifies the biological causes of similarity among species, and discusses methods for reconstructing phylogenetic trees, along with many other topics. The book will interest all students, professionals, and researchers in evolutionary biology, ecology, genetics and related fields.
Download or read book An Introduction to Systems Biology written by Uri Alon and published by CRC Press. This book was released on 2006-07-07 with total page 324 pages. Available in PDF, EPUB and Kindle. Book excerpt: Thorough and accessible, this book presents the design principles of biological systems, and highlights the recurring circuit elements that make up biological networks. It provides a simple mathematical framework which can be used to understand and even design biological circuits. The textavoids specialist terms, focusing instead on several well-studied biological systems that concisely demonstrate key principles. An Introduction to Systems Biology: Design Principles of Biological Circuits builds a solid foundation for the intuitive understanding of general principles. It encourages the reader to ask why a system is designed in a particular way and then proceeds to answer with simplified models.
Download or read book Encyclopedia of Evolutionary Biology written by and published by Academic Press. This book was released on 2016-04-14 with total page 2138 pages. Available in PDF, EPUB and Kindle. Book excerpt: Encyclopedia of Evolutionary Biology, Four Volume Set is the definitive go-to reference in the field of evolutionary biology. It provides a fully comprehensive review of the field in an easy to search structure. Under the collective leadership of fifteen distinguished section editors, it is comprised of articles written by leading experts in the field, providing a full review of the current status of each topic. The articles are up-to-date and fully illustrated with in-text references that allow readers to easily access primary literature. While all entries are authoritative and valuable to those with advanced understanding of evolutionary biology, they are also intended to be accessible to both advanced undergraduate and graduate students. Broad topics include the history of evolutionary biology, population genetics, quantitative genetics; speciation, life history evolution, evolution of sex and mating systems, evolutionary biogeography, evolutionary developmental biology, molecular and genome evolution, coevolution, phylogenetic methods, microbial evolution, diversification of plants and fungi, diversification of animals, and applied evolution. Presents fully comprehensive content, allowing easy access to fundamental information and links to primary research Contains concise articles by leading experts in the field that ensures current coverage of each topic Provides ancillary learning tools like tables, illustrations, and multimedia features to assist with the comprehension process
Download or read book Progress and Prospects in Evolutionary Biology written by Jeffrey R. Powell and published by Oxford University Press, USA. This book was released on 1997 with total page 577 pages. Available in PDF, EPUB and Kindle. Book excerpt: The common fruitfly, Drosophila, is the most extensively studied of all organisms in genetical research. Thus, it would appear to be the best model for achieving new insights. Its use in evolutionary studies has resulted in an explosion of knowledge which has never before been gathered into a single volume. This book spans the full range of evolutionary studies - population genetics, ecology, ecological genetics, speciation, phylogenetics, genome evolution, molecular; evolution, and development. In covering these topics, highlights of empirical research are emphasized and are put into the context of major issues in evolution.
Download or read book Evolutionary Dynamics written by Martin A. Nowak and published by Harvard University Press. This book was released on 2006-09-29 with total page 390 pages. Available in PDF, EPUB and Kindle. Book excerpt: At a time of unprecedented expansion in the life sciences, evolution is the one theory that transcends all of biology. Any observation of a living system must ultimately be interpreted in the context of its evolution. Evolutionary change is the consequence of mutation and natural selection, which are two concepts that can be described by mathematical equations. Evolutionary Dynamics is concerned with these equations of life. In this book, Martin A. Nowak draws on the languages of biology and mathematics to outline the mathematical principles according to which life evolves. His work introduces readers to the powerful yet simple laws that govern the evolution of living systems, no matter how complicated they might seem. Evolution has become a mathematical theory, Nowak suggests, and any idea of an evolutionary process or mechanism should be studied in the context of the mathematical equations of evolutionary dynamics. His book presents a range of analytical tools that can be used to this end: fitness landscapes, mutation matrices, genomic sequence space, random drift, quasispecies, replicators, the Prisoner’s Dilemma, games in finite and infinite populations, evolutionary graph theory, games on grids, evolutionary kaleidoscopes, fractals, and spatial chaos. Nowak then shows how evolutionary dynamics applies to critical real-world problems, including the progression of viral diseases such as AIDS, the virulence of infectious agents, the unpredictable mutations that lead to cancer, the evolution of altruism, and even the evolution of human language. His book makes a clear and compelling case for understanding every living system—and everything that arises as a consequence of living systems—in terms of evolutionary dynamics.
Download or read book The Logic of Chance written by Eugene V. Koonin and published by FT Press. This book was released on 2011-06-23 with total page 530 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Logic of Chance offers a reappraisal and a new synthesis of theories, concepts, and hypotheses on the key aspects of the evolution of life on earth in light of comparative genomics and systems biology. The author presents many specific examples from systems and comparative genomic analysis to begin to build a new, much more detailed, complex, and realistic picture of evolution. The book examines a broad range of topics in evolutionary biology including the inadequacy of natural selection and adaptation as the only or even the main mode of evolution; the key role of horizontal gene transfer in evolution and the consequent overhaul of the Tree of Life concept; the central, underappreciated evolutionary importance of viruses; the origin of eukaryotes as a result of endosymbiosis; the concomitant origin of cells and viruses on the primordial earth; universal dependences between genomic and molecular-phenomic variables; and the evolving landscape of constraints that shape the evolution of genomes and molecular phenomes. "Koonin's account of viral and pre-eukaryotic evolution is undoubtedly up-to-date. His "mega views" of evolution (given what was said above) and his cosmological musings, on the other hand, are interesting reading." Summing Up: Recommended Reprinted with permission from CHOICE, copyright by the American Library Association.
Download or read book Evolutionary Genomics and Systems Biology written by Gustavo Caetano-Anoll¿s and published by John Wiley & Sons. This book was released on 2011-09-26 with total page 529 pages. Available in PDF, EPUB and Kindle. Book excerpt: A comprehensive, authoritative look at an emergent area in post-genomic science, Evolutionary genomics is an up-and-coming, complex field that attempts to explain the biocomplexity of the living world. Evolutionary Genomics and Systems Biology is the first full-length book to blend established and emerging concepts in bioinformatics, evolution, genomics, and structural biology, with the integrative views of network and systems biology. Three key aspects of evolutionary genomics and systems biology are covered in clear detail: the study of genomic history, i.e., understanding organismal evolution at the genomic level; the study of macromolecular complements, which encompasses the evolution of the protein and RNA machinery that propels life; and the evolutionary and dynamic study of wiring diagrams—macromolecular components in interaction—in the context of genomic complements. The book also features: A solid, comprehensive treatment of phylogenomics, the evolution of genomes, and the evolution of biological networks, within the framework of systems biology A special section on RNA biology—translation, evolution of structure, and micro RNA and regulation of gene expression Chapters on the mapping of genotypes to phenotypes, the role of information in biology, protein architecture and biological function, chromosomal rearrangements, and biological networks and disease Contributions by leading authorities on each topic Evolutionary Genomics and Systems Biology is an ideal book for students and professionals in genomics, bioinformatics, evolution, structural biology, complexity, origins of life, systematic biology, and organismal diversity, as well as those individuals interested in aspects of biological sciences as they interface with chemistry, physics, and computer science and engineering.
Download or read book Evolutionary Theory written by Niles Eldredge and published by University of Chicago Press. This book was released on 2016-09-23 with total page 394 pages. Available in PDF, EPUB and Kindle. Book excerpt: The natural world is infinitely complex and hierarchically structured, with smaller units forming the components of progressively larger systems: molecules make up cells, cells comprise tissues and organs that are, in turn, parts of individual organisms, which are united into populations and integrated into yet more encompassing ecosystems. In the face of such awe-inspiring complexity, there is a need for a comprehensive, non-reductionist evolutionary theory. Having emerged at the crossroads of paleobiology, genetics, and developmental biology, the hierarchical approach to evolution provides a unifying perspective on the natural world and offers an operational framework for scientists seeking to understand the way complex biological systems work and evolve. Coedited by one of the founders of hierarchy theory and featuring a diverse and renowned group of contributors, this volume provides an integrated, comprehensive, cutting-edge introduction to the hierarchy theory of evolution. From sweeping historical reviews to philosophical pieces, theoretical essays, and strictly empirical chapters, it reveals hierarchy theory as a vibrant field of scientific enterprise that holds promise for unification across the life sciences and offers new venues of empirical and theoretical research. Stretching from molecules to the biosphere, hierarchy theory aims to provide an all-encompassing understanding of evolution and—with this first collection devoted entirely to the concept—will help make transparent the fundamental patterns that propel living systems.
Download or read book Keywords in Evolutionary Biology written by Evelyn Fox Keller and published by Harvard University Press. This book was released on 1992 with total page 434 pages. Available in PDF, EPUB and Kindle. Book excerpt: In science, more than elsewhere, a word is expected to mean what it says, nothing more, nothing less. But scientific discourse is neither different nor separable from ordinary language--meanings are multiple, ambiguities ubiquitous. Keywords in Evolutionary Biology grapples with this problem in a field especially prone to the confusion engendered by semantic imprecision. Written by historians, philosophers, and biologists--including, among others, Stephen Jay Gould, Diane Paul, John Beatty, Robert Richards, Richard Lewontin, David Sloan Wilson, Peter Bowler, and Richard Dawkins--these essays identify and explicate those terms in evolutionary biology which, though commonly used, are plagues by multiple concurrent and historically varying meanings. By clarifying these terms in their many guises, the editors Evelyn Fox Keller and Elisabeth Lloyd hope to focus attention on major scholarly problems in the field--problems sometimes obscured, sometimes reveals, and sometimes even created by the use of such equivocal words. "Competition," "adaptation," and "fitness," for instance, are among the terms whose multiple meaning have led to more than merely semantic debates in evolutionary biology. Exploring the complexity of keywords and clarifying their role in prominent issues in the field, this book will prove invaluable to scientists and philosophers trying to come to terms with evolutionary theory; it will also serve as a useful guide to future research into the way in which scientific language works.
