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Book Computational Methods for Three Dimensional Microscopy Reconstruction

Download or read book Computational Methods for Three Dimensional Microscopy Reconstruction written by Gabor T. Herman and published by Springer Science & Business Media. This book was released on 2014-01-29 with total page 275 pages. Available in PDF, EPUB and Kindle. Book excerpt: Approaches to the recovery of three-dimensional information on a biological object, which are often formulated or implemented initially in an intuitive way, are concisely described here based on physical models of the object and the image-formation process. Both three-dimensional electron microscopy and X-ray tomography can be captured in the same mathematical framework, leading to closely-related computational approaches, but the methodologies differ in detail and hence pose different challenges. The editors of this volume, Gabor T. Herman and Joachim Frank, are experts in the respective methodologies and present research at the forefront of biological imaging and structural biology. Computational Methods for Three-Dimensional Microscopy Reconstruction will serve as a useful resource for scholars interested in the development of computational methods for structural biology and cell biology, particularly in the area of 3D imaging and modeling.

Book 3D Image Reconstruction for CT and PET

Download or read book 3D Image Reconstruction for CT and PET written by Daniele Panetta and published by CRC Press. This book was released on 2020-10-11 with total page 97 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is a practical guide to tomographic image reconstruction with projection data, with strong focus on Computed Tomography (CT) and Positron Emission Tomography (PET). Classic methods such as FBP, ART, SIRT, MLEM and OSEM are presented with modern and compact notation, with the main goal of guiding the reader from the comprehension of the mathematical background through a fast-route to real practice and computer implementation of the algorithms. Accompanied by example data sets, real ready-to-run Python toolsets and scripts and an overview the latest research in the field, this guide will be invaluable for graduate students and early-career researchers and scientists in medical physics and biomedical engineering who are beginners in the field of image reconstruction. A top-down guide from theory to practical implementation of PET and CT reconstruction methods, without sacrificing the rigor of mathematical background Accompanied by Python source code snippets, suggested exercises, and supplementary ready-to-run examples for readers to download from the CRC Press website Ideal for those willing to move their first steps on the real practice of image reconstruction, with modern scientific programming language and toolsets Daniele Panetta is a researcher at the Institute of Clinical Physiology of the Italian National Research Council (CNR-IFC) in Pisa. He earned his MSc degree in Physics in 2004 and specialisation diploma in Health Physics in 2008, both at the University of Pisa. From 2005 to 2007, he worked at the Department of Physics "E. Fermi" of the University of Pisa in the field of tomographic image reconstruction for small animal imaging micro-CT instrumentation. His current research at CNR-IFC has as its goal the identification of novel PET/CT imaging biomarkers for cardiovascular and metabolic diseases. In the field micro-CT imaging, his interests cover applications of three-dimensional morphometry of biosamples and scaffolds for regenerative medicine. He acts as reviewer for scientific journals in the field of Medical Imaging: Physics in Medicine and Biology, Medical Physics, Physica Medica, and others. Since 2012, he is adjunct professor in Medical Physics at the University of Pisa. Niccolò Camarlinghi is a researcher at the University of Pisa. He obtained his MSc in Physics in 2007 and his PhD in Applied Physics in 2012. He has been working in the field of Medical Physics since 2008 and his main research fields are medical image analysis and image reconstruction. He is involved in the development of clinical, pre-clinical PET and hadron therapy monitoring scanners. At the time of writing this book he was a lecturer at University of Pisa, teaching courses of life-sciences and medical physics laboratory. He regularly acts as a referee for the following journals: Medical Physics, Physics in Medicine and Biology, Transactions on Medical Imaging, Computers in Biology and Medicine, Physica Medica, EURASIP Journal on Image and Video Processing, Journal of Biomedical and Health Informatics.

Book Three dimensional Photoacoustic Computed Tomography

Download or read book Three dimensional Photoacoustic Computed Tomography written by Kun Wang (Biomedical engineer) and published by . This book was released on 2012 with total page 128 pages. Available in PDF, EPUB and Kindle. Book excerpt: Photoacoustic computed tomography: PACT), also known as optoacoustic tomography, is a rapidly emerging imaging modality that holds great promise for a wide range of biomedical imaging applications. Much effort has been devoted to the investigation of imaging physics and the optimization of experimental designs. Meanwhile, a variety of image reconstruction algorithms have been developed for the purpose of computed tomography. Most of these algorithms assume full knowledge of the acoustic pressure function on a measurement surface that either encloses the object or extends to infinity, which poses many difficulties for practical applications. To overcome these limitations, iterative image reconstruction algorithms have been actively investigated. However, little work has been conducted on imaging models that incorporate the characteristics of data acquisition systems. Moreover, when applying to experimental data, most studies simplify the inherent three-dimensional wave propagation as two-dimensional imaging models by introducing heuristic assumptions on the transducer responses and/or the object structures. One important reason is because three-dimensional image reconstruction is computationally burdensome. The inaccurate imaging models severely limit the performance of iterative image reconstruction algorithms in practice. In the dissertation, we propose a framework to construct imaging models that incorporate the characteristics of ultrasonic transducers. Based on the imaging models, we systematically investigate various iterative image reconstruction algorithms, including advanced algorithms that employ total variation-norm regularization. In order to accelerate three-dimensional image reconstruction, we develop parallel implementations on graphic processing units. In addition, we derive a fast Fourier-transform based analytical image reconstruction formula. By use of iterative image reconstruction algorithms based on the proposed imaging models, PACT imaging scanners can have a compact size while maintaining high spatial resolution. The research demonstrates, for the first time, the feasibility and advantages of iterative image reconstruction algorithms in three-dimensional PACT.

Book Computed Tomography

    Book Details:
  • Author : Willi A. Kalender
  • Publisher : John Wiley & Sons
  • Release : 2011-07-07
  • ISBN : 3895786446
  • Pages : 372 pages

Download or read book Computed Tomography written by Willi A. Kalender and published by John Wiley & Sons. This book was released on 2011-07-07 with total page 372 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book offers a comprehensive and user-oriented description of the theoretical and technical system fundamentals of computed tomography (CT) for a wide readership, from conventional single-slice acquisitions to volume acquisition with multi-slice and cone-beam spiral CT. It covers in detail all characteristic parameters relevant for image quality and all performance features significant for clinical application. Readers will thus be informed how to use a CT system to an optimum depending on the different diagnostic requirements. This includes a detailed discussion about the dose required and about dose measurements as well as how to reduce dose in CT. All considerations pay special attention to spiral CT and to new developments towards advanced multi-slice and cone-beam CT. For the third edition most of the contents have been updated and latest topics like dual source CT, dual energy CT, flat detector CT and interventional CT have been added. The enclosed CD-ROM again offers copies of all figures in the book and attractive case studies, including many examples from the most recent 64-slice acquisitions, and interactive exercises for image viewing and manipulation. This book is intended for all those who work daily, regularly or even only occasionally with CT: physicians, radiographers, engineers, technicians and physicists. A glossary describes all the important technical terms in alphabetical order. The enclosed DVD again offers attractive case studies, including many examples from the most recent 64-slice acquisitions, and interactive exercises for image viewing and manipulation. This book is intended for all those who work daily, regularly or even only occasionally with CT: physicians, radiographers, engineers, technicians and physicists. A glossary describes all the important technical terms in alphabetical order.

Book 3D Reconstruction

Download or read book 3D Reconstruction written by Jim Ashworth and published by . This book was released on 2014 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Three-dimensional (3D) reconstruction is the process of capturing the shape and appearance of real objects using computer vision and computer graphics. In this book, the authors present topical research in the study of the methods, applications and challenges of 3D reconstruction. Topics include 3D medical reconstruction and case studies; 3D reconstruction of coronary anatomy using invasive imaging modalities; recent advances in eel spectroscopic tomography; stereoscopic Schlieren/shadowgraph 3D reconstruction techniques; three-dimensional refractive index imaging of cells to study light scattering properties of cells and tissue; 3D imaging of material properties by combination of scanning probe microscope and ultramicrotome; 3D reconstruction and its application for maxillofacial surgery training; the automated systems of processing of the fragmented material at archaeological and craniology 3D reconstruction; three-dimensional reconstruction of an acinus for numerical and experimental studies; large scene reconstruction based on ToF cameras; and the structure and motion factorisation of non-rigid objects.

Book Three Dimensional Image Reconstruction in Radiology and Nuclear Medicine

Download or read book Three Dimensional Image Reconstruction in Radiology and Nuclear Medicine written by Pierre Grangeat and published by . This book was released on 2014-01-15 with total page 332 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Book Three Dimensional Reconstruction in Biology

Download or read book Three Dimensional Reconstruction in Biology written by P. N. Gaunt and published by . This book was released on 1978 with total page 196 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Book 3D Scanner   Unabridged Guide

Download or read book 3D Scanner Unabridged Guide written by Mark Koch and published by Tebbo. This book was released on 2012-09-01 with total page 412 pages. Available in PDF, EPUB and Kindle. Book excerpt: Complete, Unabridged Guide to 3D scanner. Get the information you need--fast! This comprehensive guide offers a thorough view of key knowledge and detailed insight. It's all you need. Here's part of the content - you would like to know it all? Delve into this book today!..... : Hand-held laser scanners create a 3D image through the triangulation mechanism described above: a laser dot or line is projected onto an object from a hand-held device and a sensor (typically a charge-coupled device or position sensitive device) measures the distance to the surface. ... Computed tomography (CT) is a medical imaging method which generates a three-dimensional image of the inside of an object from a large series of two-dimensional X-ray images, similarly Magnetic resonance imaging is another a medical imaging technique that provides much greater contrast between the different soft tissues of the body than computed tomography (CT) does, making it especially useful in neurological (brain), musculoskeletal, cardiovascular, and oncological (cancer) imaging. ... Many Chairside dental CAD/CAM systems and Dental Laboratory CAD/CAM systems use 3D Scanner technologies to capture the 3D surface of a dental preparation (either in vivo or in vitro), in order to produce a restoration digitally using CAD software and ultimately produce the final restoration using a CAM technology (such as a CNC milling machine, or 3D printer). ... The process of comparing 3D data against a CAD model is referred to as CAD-Compare, and can be a useful technique for applications such as determining wear patterns on molds and tooling, determining accuracy of final build, analyzing gap and flush, or analyzing highly complex sculpted surfaces. There is absolutely nothing that isn't thoroughly covered in the book. It is straightforward, and does an excellent job of explaining all about 3D scanner in key topics and material. There is no reason to invest in any other materials to learn about 3D scanner. You'll understand it all. Inside the Guide: 3D scanner, X-ray computed tomography, Voxel, Volume rendering, Visual hull, Visual effects, Virtual reality, Video game, Time-of-flight camera, Three-dimensional space, Texture mapping, Structured-light 3D scanner, Speed of light, Solid modeling, Skeletal animation, Six degrees of freedom, Segmentation (image processing), Reverse engineering, Rapid prototyping, Polygon mesh, Point cloud, Plaster cast, Photogrammetry, PhotoModeler, Panoramic photography, Orthotics, Motion capture, Marching cubes, Marc Levoy, Magnetic resonance imaging, Laser trackers, Laser scanning, Laser rangefinder, Laser engraving, Laser, Kasubi Tombs, Interferometry, Industrial design, Industrial CT scanning, Image-based meshing, Global illumination, David (Michelangelo), CyArk, Crowd simulation, Coordinate system, Confocal microscopy, Confocal laser scanning microscopy, Computer vision, Computer animation, Computer-aided design, Animation, Additive Manufacturing File Format, 3D rendering, 3D reconstruction, 3D printing, 3D modeling, 3D computer graphics software, 3D computer graphics

Book Three dimensional Image Reconstruction in Circular and Helical Computed Tomography

Download or read book Three dimensional Image Reconstruction in Circular and Helical Computed Tomography written by Henrik Turbell and published by . This book was released on 1999 with total page 85 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Book Improving the Accuracy of 3 D Reconstruction in Robotic Vision Applications

Download or read book Improving the Accuracy of 3 D Reconstruction in Robotic Vision Applications written by Yuanzheng Gong and published by . This book was released on 2016 with total page 143 pages. Available in PDF, EPUB and Kindle. Book excerpt: Three-dimensional (3D) surface reconstruction is a process for retrieving the 3D shape and appearance of real objects or scenes. The generated 3D point clouds can be used in many fields, including entertainment, measurement, design, reverse engineering, homeland security and {\it etc}. Over the past decades, 3D reconstruction has been widely used in clinical diagnosis and surgical treatment of diseases, such as X-ray, ultrasound, computed tomography (CT) and magnetic resonance imaging (MRI). However, all of these technologies are radiography-based volumetric 3D reconstruction instead of 3D surface reconstruction. With the growing need of tissue texture information for clinical purposes, the 3D reconstruction based on endoscopic images plays a more vital role than ever, especially in tumor diagnosis and surveillance of esophagus, lung, stomach, bladder and etc. In this work, new algorithms were developed to solve specific 3D reconstruction problems in biomedical applications. To reconstruct the 3D internal surface of a human organ, such as bladder or stomach, a sequence of 2D endoscopic images were captured by rotating and moving the scope around inside of the organs. This 3D reconstruction solely based on images is called Structure-from-Motion (SfM). To overcome the problems of insufficient features in medical images and short camera baselines, the camera poses were initially estimated by constraining the surface on a spherical shape at the first step. The more realistic organ surface was then reconstructed by releasing the spherical constraints. Extra features were built to handle multiple scanning videos and recover the physical scale of the 3D surface with reference lesion target. To reduce the human error and surgical operating time in removing the tumor/cancer in brain, a semi-automated surgical robotic system with 3D vision is being developed. By providing an accurate 3D surface model of the surgical field based on a RGB (red, green and blue) camera attached to the surgical tool, the robot could perform tedious operation of residual tumor tissue removal automatically. Camera position and orientation were also known throughout the surgery from the robotic system. This 3D reconstruction with known camera parameters is called Multi-view Stereo. Due to the mechanical limitation of robotic system, the camera pose parameters were with certain errors (tolerance). To utilize these inaccurate but bound constrained variables, Bound Constrained Bundle Adjustment (BCBA) algorithm was developed based on gradient projection to generate accurate 3D model efficiently. Besides biomedical applications, 3D computer vision is emerging in traditional industries, such as manufacture and quality control applications. To build a potential in-line 3D metrology tool for internal threads in automobile engine blocks, two 3D reconstruction algorithms were developed with forward-view and side-view cameras, respectively. Axial-stereo vision algorithm was proposed to create dense 3D point cloud of internal surface based on two forward-view images that are aligned on the optical axis. Feature-based panoramic 3D registration algorithm was developed to register different side-view image-generated 3D surface patches together, by taking advantage of the robustness and accuracy of SIFT features. Each side-view patch of the repeated geometry of a threaded hole was reconstructed by multi-view stereo. Comparing with traditional 3D point clouds registration algorithm Iterative Closest Point (ICP), our algorithm has the advantages of high-efficiency and high-accuracy, especially for the registration of repetitive geometries.

Book Scientific and Technical Aerospace Reports

Download or read book Scientific and Technical Aerospace Reports written by and published by . This book was released on 1994 with total page 836 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Book Principles of Computerized Tomographic Imaging

Download or read book Principles of Computerized Tomographic Imaging written by Avinash C. Kak and published by SIAM. This book was released on 2001-01-01 with total page 335 pages. Available in PDF, EPUB and Kindle. Book excerpt: A comprehensive, tutorial-style introduction to the algorithms necessary for tomographic imaging.

Book A New Computational Tool for Three dimensional Reconstruction of Asymmetric Biological Materials from Microscopic Projections

Download or read book A New Computational Tool for Three dimensional Reconstruction of Asymmetric Biological Materials from Microscopic Projections written by Peter D. Lauren and published by . This book was released on 1996 with total page 168 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Book Index Medicus

Download or read book Index Medicus written by and published by . This book was released on 2004 with total page 2454 pages. Available in PDF, EPUB and Kindle. Book excerpt: Vols. for 1963- include as pt. 2 of the Jan. issue: Medical subject headings.

Book Electron Tomography

    Book Details:
  • Author : Joachim Frank
  • Publisher : Springer Science & Business Media
  • Release : 2008-03-05
  • ISBN : 0387690085
  • Pages : 464 pages

Download or read book Electron Tomography written by Joachim Frank and published by Springer Science & Business Media. This book was released on 2008-03-05 with total page 464 pages. Available in PDF, EPUB and Kindle. Book excerpt: This definitive work provides a comprehensive treatment of the mathematical background and working methods of three-dimensional reconstruction from tilt series. Special emphasis is placed on the problems presented by limitations of data collection in the transmission electron microscope. The book, extensively revised and updated, takes the reader from biological specimen preparation to three-dimensional images of the cell and its components.

Book 3D Imaging in Medicine

    Book Details:
  • Author : Karl H. Höhne
  • Publisher : Springer Science & Business Media
  • Release : 2012-12-06
  • ISBN : 3642842119
  • Pages : 449 pages

Download or read book 3D Imaging in Medicine written by Karl H. Höhne and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 449 pages. Available in PDF, EPUB and Kindle. Book excerpt: The visualization of human anatomy for diagnostic, therapeutic, and educational pur poses has long been a challenge for scientists and artists. In vivo medical imaging could not be introduced until the discovery of X-rays by Wilhelm Conrad ROntgen in 1895. With the early medical imaging techniques which are still in use today, the three-dimensional reality of the human body can only be visualized in two-dimensional projections or cross-sections. Recently, biomedical engineering and computer science have begun to offer the potential of producing natural three-dimensional views of the human anatomy of living subjects. For a broad application of such technology, many scientific and engineering problems still have to be solved. In order to stimulate progress, the NATO Advanced Research Workshop in Travemiinde, West Germany, from June 25 to 29 was organized. It brought together approximately 50 experts in 3D-medical imaging from allover the world. Among the list of topics image acquisition was addressed first, since its quality decisively influences the quality of the 3D-images. For 3D-image generation - in distinction to 2D imaging - a decision has to be made as to which objects contained in the data set are to be visualized. Therefore special emphasis was laid on methods of object definition. For the final visualization of the segmented objects a large variety of visualization algorithms have been proposed in the past. The meeting assessed these techniques.