Download or read book Statistical Learning with Sparsity written by Trevor Hastie and published by CRC Press. This book was released on 2015-05-07 with total page 354 pages. Available in PDF, EPUB and Kindle. Book excerpt: Discover New Methods for Dealing with High-Dimensional DataA sparse statistical model has only a small number of nonzero parameters or weights; therefore, it is much easier to estimate and interpret than a dense model. Statistical Learning with Sparsity: The Lasso and Generalizations presents methods that exploit sparsity to help recover the underl

Download or read book Computational Genomics with R written by Altuna Akalin and published by CRC Press. This book was released on 2020-12-16 with total page 463 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computational Genomics with R provides a starting point for beginners in genomic data analysis and also guides more advanced practitioners to sophisticated data analysis techniques in genomics. The book covers topics from R programming, to machine learning and statistics, to the latest genomic data analysis techniques. The text provides accessible information and explanations, always with the genomics context in the background. This also contains practical and well-documented examples in R so readers can analyze their data by simply reusing the code presented. As the field of computational genomics is interdisciplinary, it requires different starting points for people with different backgrounds. For example, a biologist might skip sections on basic genome biology and start with R programming, whereas a computer scientist might want to start with genome biology. After reading: You will have the basics of R and be able to dive right into specialized uses of R for computational genomics such as using Bioconductor packages. You will be familiar with statistics, supervised and unsupervised learning techniques that are important in data modeling, and exploratory analysis of high-dimensional data. You will understand genomic intervals and operations on them that are used for tasks such as aligned read counting and genomic feature annotation. You will know the basics of processing and quality checking high-throughput sequencing data. You will be able to do sequence analysis, such as calculating GC content for parts of a genome or finding transcription factor binding sites. You will know about visualization techniques used in genomics, such as heatmaps, meta-gene plots, and genomic track visualization. You will be familiar with analysis of different high-throughput sequencing data sets, such as RNA-seq, ChIP-seq, and BS-seq. You will know basic techniques for integrating and interpreting multi-omics datasets. Altuna Akalin is a group leader and head of the Bioinformatics and Omics Data Science Platform at the Berlin Institute of Medical Systems Biology, Max Delbrück Center, Berlin. He has been developing computational methods for analyzing and integrating large-scale genomics data sets since 2002. He has published an extensive body of work in this area. The framework for this book grew out of the yearly computational genomics courses he has been organizing and teaching since 2015.

Download or read book Bayesian Data Analysis Third Edition written by Andrew Gelman and published by CRC Press. This book was released on 2013-11-01 with total page 677 pages. Available in PDF, EPUB and Kindle. Book excerpt: Now in its third edition, this classic book is widely considered the leading text on Bayesian methods, lauded for its accessible, practical approach to analyzing data and solving research problems. Bayesian Data Analysis, Third Edition continues to take an applied approach to analysis using up-to-date Bayesian methods. The authors—all leaders in the statistics community—introduce basic concepts from a data-analytic perspective before presenting advanced methods. Throughout the text, numerous worked examples drawn from real applications and research emphasize the use of Bayesian inference in practice. New to the Third Edition Four new chapters on nonparametric modeling Coverage of weakly informative priors and boundary-avoiding priors Updated discussion of cross-validation and predictive information criteria Improved convergence monitoring and effective sample size calculations for iterative simulation Presentations of Hamiltonian Monte Carlo, variational Bayes, and expectation propagation New and revised software code The book can be used in three different ways. For undergraduate students, it introduces Bayesian inference starting from first principles. For graduate students, the text presents effective current approaches to Bayesian modeling and computation in statistics and related fields. For researchers, it provides an assortment of Bayesian methods in applied statistics. Additional materials, including data sets used in the examples, solutions to selected exercises, and software instructions, are available on the book’s web page.

Download or read book Handbook of Graphs and Networks written by Stefan Bornholdt and published by John Wiley & Sons. This book was released on 2006-03-06 with total page 417 pages. Available in PDF, EPUB and Kindle. Book excerpt: Complex interacting networks are observed in systems from such diverse areas as physics, biology, economics, ecology, and computer science. For example, economic or social interactions often organize themselves in complex network structures. Similar phenomena are observed in traffic flow and in communication networks as the internet. In current problems of the Biosciences, prominent examples are protein networks in the living cell, as well as molecular networks in the genome. On larger scales one finds networks of cells as in neural networks, up to the scale of organisms in ecological food webs. This book defines the field of complex interacting networks in its infancy and presents the dynamics of networks and their structure as a key concept across disciplines. The contributions present common underlying principles of network dynamics and their theoretical description and are of interest to specialists as well as to the non-specialized reader looking for an introduction to this new exciting field. Theoretical concepts include modeling networks as dynamical systems with numerical methods and new graph theoretical methods, but also focus on networks that change their topology as in morphogenesis and self-organization. The authors offer concepts to model network structures and dynamics, focussing on approaches applicable across disciplines.

Download or read book Uncertainty Quantification Techniques in Statistics written by Jong-Min Kim and published by MDPI. This book was released on 2020-04-03 with total page 128 pages. Available in PDF, EPUB and Kindle. Book excerpt: Uncertainty quantification (UQ) is a mainstream research topic in applied mathematics and statistics. To identify UQ problems, diverse modern techniques for large and complex data analyses have been developed in applied mathematics, computer science, and statistics. This Special Issue of Mathematics (ISSN 2227-7390) includes diverse modern data analysis methods such as skew-reflected-Gompertz information quantifiers with application to sea surface temperature records, the performance of variable selection and classification via a rank-based classifier, two-stage classification with SIS using a new filter ranking method in high throughput data, an estimation of sensitive attribute applying geometric distribution under probability proportional to size sampling, combination of ensembles of regularized regression models with resampling-based lasso feature selection in high dimensional data, robust linear trend test for low-coverage next-generation sequence data controlling for covariates, and comparing groups of decision-making units in efficiency based on semiparametric regression.

Download or read book Introduction to Multivariate Analysis written by Sadanori Konishi and published by CRC Press. This book was released on 2014-06-06 with total page 340 pages. Available in PDF, EPUB and Kindle. Book excerpt: Select the Optimal Model for Interpreting Multivariate Data Introduction to Multivariate Analysis: Linear and Nonlinear Modeling shows how multivariate analysis is widely used for extracting useful information and patterns from multivariate data and for understanding the structure of random phenomena. Along with the basic concepts of various procedures in traditional multivariate analysis, the book covers nonlinear techniques for clarifying phenomena behind observed multivariate data. It primarily focuses on regression modeling, classification and discrimination, dimension reduction, and clustering. The text thoroughly explains the concepts and derivations of the AIC, BIC, and related criteria and includes a wide range of practical examples of model selection and evaluation criteria. To estimate and evaluate models with a large number of predictor variables, the author presents regularization methods, including the L1 norm regularization that gives simultaneous model estimation and variable selection. For advanced undergraduate and graduate students in statistical science, this text provides a systematic description of both traditional and newer techniques in multivariate analysis and machine learning. It also introduces linear and nonlinear statistical modeling for researchers and practitioners in industrial and systems engineering, information science, life science, and other areas.

Download or read book Advanced Mean Field Methods written by Manfred Opper and published by MIT Press. This book was released on 2001 with total page 300 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book covers the theoretical foundations of advanced mean field methods, explores the relation between the different approaches, examines the quality of the approximation obtained, and demonstrates their application to various areas of probabilistic modeling. A major problem in modern probabilistic modeling is the huge computational complexity involved in typical calculations with multivariate probability distributions when the number of random variables is large. Because exact computations are infeasible in such cases and Monte Carlo sampling techniques may reach their limits, there is a need for methods that allow for efficient approximate computations. One of the simplest approximations is based on the mean field method, which has a long history in statistical physics. The method is widely used, particularly in the growing field of graphical models. Researchers from disciplines such as statistical physics, computer science, and mathematical statistics are studying ways to improve this and related methods and are exploring novel application areas. Leading approaches include the variational approach, which goes beyond factorizable distributions to achieve systematic improvements; the TAP (Thouless-Anderson-Palmer) approach, which incorporates correlations by including effective reaction terms in the mean field theory; and the more general methods of graphical models. Bringing together ideas and techniques from these diverse disciplines, this book covers the theoretical foundations of advanced mean field methods, explores the relation between the different approaches, examines the quality of the approximation obtained, and demonstrates their application to various areas of probabilistic modeling.

Download or read book Big and Complex Data Analysis written by S. Ejaz Ahmed and published by Springer. This book was released on 2017-03-21 with total page 390 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume conveys some of the surprises, puzzles and success stories in high-dimensional and complex data analysis and related fields. Its peer-reviewed contributions showcase recent advances in variable selection, estimation and prediction strategies for a host of useful models, as well as essential new developments in the field. The continued and rapid advancement of modern technology now allows scientists to collect data of increasingly unprecedented size and complexity. Examples include epigenomic data, genomic data, proteomic data, high-resolution image data, high-frequency financial data, functional and longitudinal data, and network data. Simultaneous variable selection and estimation is one of the key statistical problems involved in analyzing such big and complex data. The purpose of this book is to stimulate research and foster interaction between researchers in the area of high-dimensional data analysis. More concretely, its goals are to: 1) highlight and expand the breadth of existing methods in big data and high-dimensional data analysis and their potential for the advancement of both the mathematical and statistical sciences; 2) identify important directions for future research in the theory of regularization methods, in algorithmic development, and in methodologies for different application areas; and 3) facilitate collaboration between theoretical and subject-specific researchers.

Download or read book Fundamentals of Clinical Data Science written by Pieter Kubben and published by Springer. This book was released on 2018-12-21 with total page 219 pages. Available in PDF, EPUB and Kindle. Book excerpt: This open access book comprehensively covers the fundamentals of clinical data science, focusing on data collection, modelling and clinical applications. Topics covered in the first section on data collection include: data sources, data at scale (big data), data stewardship (FAIR data) and related privacy concerns. Aspects of predictive modelling using techniques such as classification, regression or clustering, and prediction model validation will be covered in the second section. The third section covers aspects of (mobile) clinical decision support systems, operational excellence and value-based healthcare. Fundamentals of Clinical Data Science is an essential resource for healthcare professionals and IT consultants intending to develop and refine their skills in personalized medicine, using solutions based on large datasets from electronic health records or telemonitoring programmes. The book’s promise is “no math, no code”and will explain the topics in a style that is optimized for a healthcare audience.

Download or read book High dimensional Data Analysis written by Tony Cai;Xiaotong Shen and published by . This book was released on with total page 318 pages. Available in PDF, EPUB and Kindle. Book excerpt: Over the last few years, significant developments have been taking place in highdimensional data analysis, driven primarily by a wide range of applications in many fields such as genomics and signal processing. In particular, substantial advances have been made in the areas of feature selection, covariance estimation, classification and regression. This book intends to examine important issues arising from highdimensional data analysis to explore key ideas for statistical inference and prediction. It is structured around topics on multiple hypothesis testing, feature selection, regression, cla.

Download or read book Statistical and Computational Methods for Microbiome Multi Omics Data written by Himel Mallick and published by Frontiers Media SA. This book was released on 2020-11-19 with total page 170 pages. Available in PDF, EPUB and Kindle. Book excerpt: This eBook is a collection of articles from a Frontiers Research Topic. Frontiers Research Topics are very popular trademarks of the Frontiers Journals Series: they are collections of at least ten articles, all centered on a particular subject. With their unique mix of varied contributions from Original Research to Review Articles, Frontiers Research Topics unify the most influential researchers, the latest key findings and historical advances in a hot research area! Find out more on how to host your own Frontiers Research Topic or contribute to one as an author by contacting the Frontiers Editorial Office: frontiersin.org/about/contact.

Download or read book Interpretable Machine Learning written by Christoph Molnar and published by Lulu.com. This book was released on 2020 with total page 320 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is about making machine learning models and their decisions interpretable. After exploring the concepts of interpretability, you will learn about simple, interpretable models such as decision trees, decision rules and linear regression. Later chapters focus on general model-agnostic methods for interpreting black box models like feature importance and accumulated local effects and explaining individual predictions with Shapley values and LIME. All interpretation methods are explained in depth and discussed critically. How do they work under the hood? What are their strengths and weaknesses? How can their outputs be interpreted? This book will enable you to select and correctly apply the interpretation method that is most suitable for your machine learning project.

Download or read book Feature Engineering and Selection written by Max Kuhn and published by CRC Press. This book was released on 2019-07-25 with total page 266 pages. Available in PDF, EPUB and Kindle. Book excerpt: The process of developing predictive models includes many stages. Most resources focus on the modeling algorithms but neglect other critical aspects of the modeling process. This book describes techniques for finding the best representations of predictors for modeling and for nding the best subset of predictors for improving model performance. A variety of example data sets are used to illustrate the techniques along with R programs for reproducing the results.

Download or read book Statistical Foundations of Data Science written by Jianqing Fan and published by CRC Press. This book was released on 2020-09-21 with total page 942 pages. Available in PDF, EPUB and Kindle. Book excerpt: Statistical Foundations of Data Science gives a thorough introduction to commonly used statistical models, contemporary statistical machine learning techniques and algorithms, along with their mathematical insights and statistical theories. It aims to serve as a graduate-level textbook and a research monograph on high-dimensional statistics, sparsity and covariance learning, machine learning, and statistical inference. It includes ample exercises that involve both theoretical studies as well as empirical applications. The book begins with an introduction to the stylized features of big data and their impacts on statistical analysis. It then introduces multiple linear regression and expands the techniques of model building via nonparametric regression and kernel tricks. It provides a comprehensive account on sparsity explorations and model selections for multiple regression, generalized linear models, quantile regression, robust regression, hazards regression, among others. High-dimensional inference is also thoroughly addressed and so is feature screening. The book also provides a comprehensive account on high-dimensional covariance estimation, learning latent factors and hidden structures, as well as their applications to statistical estimation, inference, prediction and machine learning problems. It also introduces thoroughly statistical machine learning theory and methods for classification, clustering, and prediction. These include CART, random forests, boosting, support vector machines, clustering algorithms, sparse PCA, and deep learning.

Download or read book Machine Learning and Data Science Blueprints for Finance written by Hariom Tatsat and published by "O'Reilly Media, Inc.". This book was released on 2020-10-01 with total page 432 pages. Available in PDF, EPUB and Kindle. Book excerpt: Over the next few decades, machine learning and data science will transform the finance industry. With this practical book, analysts, traders, researchers, and developers will learn how to build machine learning algorithms crucial to the industry. You’ll examine ML concepts and over 20 case studies in supervised, unsupervised, and reinforcement learning, along with natural language processing (NLP). Ideal for professionals working at hedge funds, investment and retail banks, and fintech firms, this book also delves deep into portfolio management, algorithmic trading, derivative pricing, fraud detection, asset price prediction, sentiment analysis, and chatbot development. You’ll explore real-life problems faced by practitioners and learn scientifically sound solutions supported by code and examples. This book covers: Supervised learning regression-based models for trading strategies, derivative pricing, and portfolio management Supervised learning classification-based models for credit default risk prediction, fraud detection, and trading strategies Dimensionality reduction techniques with case studies in portfolio management, trading strategy, and yield curve construction Algorithms and clustering techniques for finding similar objects, with case studies in trading strategies and portfolio management Reinforcement learning models and techniques used for building trading strategies, derivatives hedging, and portfolio management NLP techniques using Python libraries such as NLTK and scikit-learn for transforming text into meaningful representations

Download or read book The Statistics and Machine Learning with R Workshop written by Liu Peng and published by Packt Publishing Ltd. This book was released on 2023-10-25 with total page 516 pages. Available in PDF, EPUB and Kindle. Book excerpt: Learn the fundamentals of statistics and machine learning using R libraries for data processing, visualization, model training, and statistical inference Key Features Advance your ML career with the help of detailed explanations, intuitive illustrations, and code examples Gain practical insights into the real-world applications of statistics and machine learning Explore the technicalities of statistics and machine learning for effective data presentation Purchase of the print or Kindle book includes a free PDF eBook Book DescriptionThe Statistics and Machine Learning with R Workshop is a comprehensive resource packed with insights into statistics and machine learning, along with a deep dive into R libraries. The learning experience is further enhanced by practical examples and hands-on exercises that provide explanations of key concepts. Starting with the fundamentals, you’ll explore the complete model development process, covering everything from data pre-processing to model development. In addition to machine learning, you’ll also delve into R's statistical capabilities, learning to manipulate various data types and tackle complex mathematical challenges from algebra and calculus to probability and Bayesian statistics. You’ll discover linear regression techniques and more advanced statistical methodologies to hone your skills and advance your career. By the end of this book, you'll have a robust foundational understanding of statistics and machine learning. You’ll also be proficient in using R's extensive libraries for tasks such as data processing and model training and be well-equipped to leverage the full potential of R in your future projects.What you will learn Hone your skills in different probability distributions and hypothesis testing Explore the fundamentals of linear algebra and calculus Master crucial statistics and machine learning concepts in theory and practice Discover essential data processing and visualization techniques Engage in interactive data analysis using R Use R to perform statistical modeling, including Bayesian and linear regression Who this book is forThis book is for beginner to intermediate-level data scientists, undergraduate to masters-level students, and early to mid-senior data scientists or analysts looking to expand their knowledge of machine learning by exploring various R libraries. Basic knowledge of linear algebra and data modeling is a must.

Download or read book Hands On Machine Learning with Scikit Learn Keras and TensorFlow written by Aurélien Géron and published by "O'Reilly Media, Inc.". This book was released on 2019-09-05 with total page 851 pages. Available in PDF, EPUB and Kindle. Book excerpt: Through a series of recent breakthroughs, deep learning has boosted the entire field of machine learning. Now, even programmers who know close to nothing about this technology can use simple, efficient tools to implement programs capable of learning from data. This practical book shows you how. By using concrete examples, minimal theory, and two production-ready Python frameworks—Scikit-Learn and TensorFlow—author Aurélien Géron helps you gain an intuitive understanding of the concepts and tools for building intelligent systems. You’ll learn a range of techniques, starting with simple linear regression and progressing to deep neural networks. With exercises in each chapter to help you apply what you’ve learned, all you need is programming experience to get started. Explore the machine learning landscape, particularly neural nets Use Scikit-Learn to track an example machine-learning project end-to-end Explore several training models, including support vector machines, decision trees, random forests, and ensemble methods Use the TensorFlow library to build and train neural nets Dive into neural net architectures, including convolutional nets, recurrent nets, and deep reinforcement learning Learn techniques for training and scaling deep neural nets