Download or read book Community Interactions and Water as Drivers of Soil Microbial Communities written by Madhavi Latha Kakumanu and published by . This book was released on 2011 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Understanding the response of soil microbial communities to various environmental stresses is of current interest, because of their pivotal role in nutrient cycling, soil organic matter mineralization and influence on plant growth. Determining the affect of several biotic and abiotic factors on soil microbial communities is the overall objective of the study. The specific goals are to determine 1) the response of microbial communities to water deficit in soil and 2) how the presence of a rich biotic community determines the direction of microbial community development in cultures. Both goals are novel and unique contributions to understanding microbial ecology in soil. Dynamics in water potentials due to drying and rewetting of soil impose significant physiological challenges to soil microorganisms. To cope with these fluctuations, many microorganisms alter the chemistry and concentration of their cytoplasmic contents. The aim of this research is to understand how the microbial biomass and their cytoplasm change in response to water potential deficits under in situ soil conditions. To address this objective we characterized intracellular and extracellular metabolites in moist, dry and salt stressed soils. Our results provided the first direct evidence that microbial communities in soil in situ utilize sugars and sugar alcohols to cope with low water potential. While the cultivation and isolation of microorganisms is essential to completely explore their physiology and ecology, 99% of soil microbes resist growing in cultures. Presence of very unnatural conditions in the culture plates was considered as main reason for low cultivability. Thus, a culture-based study was conducted whereby microorganisms were grown in association with their native habitat with an objective of mimicking native conditions to promote the growth of previously uncultivated microorganisms. Moreover, the importance of biotic communities (microbe-microbe) and abiotic soil effects were assessed on bacterial growth. Our results strongly indicate that the presence of living microbial community in the vicinity of the target culture resulted in the cultivation of novel members of rare bacterial taxa from phyla Verrucomicrobia, Bacteroidetes, Proteobacteria, and Planctomycetes. These results emphasize the need to develop new culturing methods to tap the hidden microbial potential for emerging anthropogenic needs.
Download or read book Bacterial Sensing and Signaling written by Mattias Collin and published by Karger Medical and Scientific Publishers. This book was released on 2009-01-01 with total page 239 pages. Available in PDF, EPUB and Kindle. Book excerpt: Over the last fifteen years it has become increasingly obvious that bacteria are not as simple and solitary as once believed. Rather, an accumulating body of work shows that bacteria are highly complicated and social organisms, constantly sensing their surroundings and altering both their environments and behaviors to ensure survival. Direct communication between bacteria turns out to be quite common, as are coordinated intra- and interspecies responses that include the formation of highly sophisticated microbial communities. In fact, threats to bacterial survival from assaults ranging from nutrient deprivation and oxygen depletion tothe defenses of eukaryotic hostsare all managed through the integration of a dizzying array of complex sensory and communication systems with the appropriate bacterial behaviors. This volume provides an update of the current knowledgeinthe expanding field ofbacterial sensing and signaling, highlighting its most important and interesting aspects. In twelve state-of-the-art articles, respected international experts address topics such as quorum sensing and secondary messengers, chemotaxis and magnetoaerotaxis, two-component phosphotransferase systems, bacterial virulence mechanisms, thermoregulation, and more. The final chapter represents a unique description of the tools available to manipulate many of the sensing and signaling systems described in this volume. Bacterial Sensing and Signaling is recommended reading for students, scientists and clinicians with interests in microbiology, immunology, ecology, biotechnology and a range of other disciplines.
Download or read book Drivers of soil microbial community in agroecosystems written by Davide Francioli and published by . This book was released on 2017 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Standard Soil Methods for Long Term Ecological Research written by G. Philip Robertson and published by Oxford University Press. This book was released on 1999-10-28 with total page 481 pages. Available in PDF, EPUB and Kindle. Book excerpt: Standardized methods and measurements are crucial for ecological research, particularly in long-term ecological studies where the projects are by nature collaborative and where it can be difficult to distinguish signs of environmental change from the effects of differing methodologies. This second volume in the Long-Term Ecological Research (LTER) Network Series addresses these issues directly by providing a comprehensive standardized set of protocols for measuring soil properties. The goal of the volume is to facilitate cross-site synthesis and evaluation of ecosystem processes. Chapters cover methods for studying physical and chemical properties of soils, soil biological properties, and soil organisms, and they include work from many leaders in the field. The book is the first broadly based compendium of standardized soil measurement methods and will be an invaluable resource for ecologists, agronomists, and soil scientists.
Download or read book Microbial Communities of Polar and Alpine Soils written by Laura Zucconi and published by Frontiers Media SA. This book was released on 2021-11-10 with total page 187 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Microbial Communities in Soil written by V. Jensen and published by Springer. This book was released on 1986-04-30 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Biophysico Chemical Processes Involving Natural Nonliving Organic Matter in Environmental Systems written by Nicola Senesi and published by John Wiley & Sons. This book was released on 2009-07-23 with total page 905 pages. Available in PDF, EPUB and Kindle. Book excerpt: An up-to-date resource on natural nonliving organic matter Bringing together world-renowned researchers to explore natural nonliving organic matter (NOM) and its chemical, biological, and ecological importance, Biophysico-Chemical Processes Involving Natural Nonliving Organic Matter in Environmental Systems offers an integrated view of the dynamics and processes of NOM. This multidisciplinary approach allows for a comprehensive treatment encompassing all the formation processes, properties, reactions, environments, and analytical techniques associated with the latest research on NOM. After briefly outlining the historical background, current ideas, and future prospects of the study of NOM, the coverage examines: The formation mechanisms of humic substances Organo-clay complexes The effects of organic matter amendment Black carbon in the environment Carbon sequestration and dynamics in soil Biological activities of humic substances Dissolved organic matter Humic substances in the rhizosphere Marine organic matter Organic matter in atmospheric particles In addition to the above topics, the coverage includes such relevant analytical techniques as separation technology; analytical pyrolysis and soft-ionization mass spectrometry; nuclear magnetic resonance; EPR, FTIR, Raman, UV-visible adsorption, fluorescence, and X-ray spectroscopies; and thermal analysis. Hundreds of illustrations and photographs further illuminate the various chapters. An essential resource for both students and professionals in environmental science, environmental engineering, water science, soil science, geology, and environmental chemistry, Biophysico-Chemical Processes Involving Natural Nonliving Organic Matter in Environmental Systems provides a unique combination of the latest discoveries, developments, and future prospects in this field.
Download or read book The Social Biology of Microbial Communities written by Institute of Medicine and published by National Academies Press. This book was released on 2013-01-10 with total page 633 pages. Available in PDF, EPUB and Kindle. Book excerpt: Beginning with the germ theory of disease in the 19th century and extending through most of the 20th century, microbes were believed to live their lives as solitary, unicellular, disease-causing organisms . This perception stemmed from the focus of most investigators on organisms that could be grown in the laboratory as cellular monocultures, often dispersed in liquid, and under ambient conditions of temperature, lighting, and humidity. Most such inquiries were designed to identify microbial pathogens by satisfying Koch's postulates.3 This pathogen-centric approach to the study of microorganisms produced a metaphorical "war" against these microbial invaders waged with antibiotic therapies, while simultaneously obscuring the dynamic relationships that exist among and between host organisms and their associated microorganisms-only a tiny fraction of which act as pathogens. Despite their obvious importance, very little is actually known about the processes and factors that influence the assembly, function, and stability of microbial communities. Gaining this knowledge will require a seismic shift away from the study of individual microbes in isolation to inquiries into the nature of diverse and often complex microbial communities, the forces that shape them, and their relationships with other communities and organisms, including their multicellular hosts. On March 6 and 7, 2012, the Institute of Medicine's (IOM's) Forum on Microbial Threats hosted a public workshop to explore the emerging science of the "social biology" of microbial communities. Workshop presentations and discussions embraced a wide spectrum of topics, experimental systems, and theoretical perspectives representative of the current, multifaceted exploration of the microbial frontier. Participants discussed ecological, evolutionary, and genetic factors contributing to the assembly, function, and stability of microbial communities; how microbial communities adapt and respond to environmental stimuli; theoretical and experimental approaches to advance this nascent field; and potential applications of knowledge gained from the study of microbial communities for the improvement of human, animal, plant, and ecosystem health and toward a deeper understanding of microbial diversity and evolution. The Social Biology of Microbial Communities: Workshop Summary further explains the happenings of the workshop.
Download or read book Soil microbiome community and functional succession mechanism driven by different factors in agricultural ecology written by Bin Huang and published by Frontiers Media SA. This book was released on 2023-09-29 with total page 538 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Aquatic Microbial Communities written by John Cairns and published by . This book was released on 1977 with total page 720 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book An Exploration Into the Delicate Balance of Soil Microbial Community Interactions written by Kristen Renae Petersen and published by . This book was released on 2016 with total page 74 pages. Available in PDF, EPUB and Kindle. Book excerpt: This study assesses the bacterial and fungal communities within the Priest River Experimental Forest in northern Idaho. We employed multiple methods to test for significant impacts of seasonality, moisture level, and sample depth on the composition of the soil microbial communities, as well as explore how members within these communities interact. Abundance data were obtained using two different loci for both bacterial and fungal taxa, therefore, we were able to compare the communities captured. The environmental correlate results imply moisture level had a significant impact within both communities, while depth only significantly impacted the bacterial community. Hierarchical clustering was performed to identify microbes with similar interactions; however, there were no apparent patterns in ecological functionality to explain why the microbes were clustered. These findings indicate further analysis is required to enhance our grasp of the microbial structure between communities. Conclusions suggest that future analyses should use both respective regions to obtain a more complete snapshot of the community.
Download or read book The Biology of Soil written by Richard Bardgett and published by Oxford University Press. This book was released on 2005-06-02 with total page 260 pages. Available in PDF, EPUB and Kindle. Book excerpt: Soil science has undergone a renaissance with increasing awareness of the importance of soil organisms and below-ground biotic interactions as drivers of community and ecosystem properties.
Download or read book Plant Microbe Interactions written by B.B. Biswas and published by Springer Science & Business Media. This book was released on 2013-11-11 with total page 455 pages. Available in PDF, EPUB and Kindle. Book excerpt: Recent years have seen tremendous progress in unraveling the molecular basis of different plant-microbe interactions. Knowledge has accumulated on the mecha nisms of the microbial infection of plants, which can lead to either disease or resistance. The mechanisms developed by plants to interact with microbes, whether viruses, bacteria, or fungi, involve events that can lead to symbiotic association or to disease or tumor formation. Cell death caused by pathogen infection has been of great interest for many years because of its association with plant resistance. There appear to be two types of plant cell death associated with pathogen infection, a rapid hypersensitive cell death localized at the site of infection during an incompatible interaction between a resistant plant and an avirulent pathogen, and a slow, normosensitive plant cell death that spreads beyond the site of infection during some compatible interactions involving a susceptible plant and a virulent, necrogenic pathogen. Plants possess a number of defense mechanisms against infection, such as (i) production of phytoalexin, (ii) formation of hydrolases, (iii) accumulation of hydroxyproline-rich glycoprotein and lignin deposition, (iv) production of pathogen-related proteins, (v) produc tion of oligosaccharides, jasmonic acid, and various other phenolic substances, and (vi) production of toxin-metabolizing enzymes. Based on these observations, insertion of a single suitable gene in a particular plant has yielded promising results in imparting resistance against specific infection or disease. It appears that a signal received after microbe infection triggers different signal transduction pathways.
Download or read book Environmental Microbiology Fundamentals and Applications written by Jean-Claude Bertrand and published by Springer. This book was released on 2015-01-26 with total page 933 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is a treatise on microbial ecology that covers traditional and cutting-edge issues in the ecology of microbes in the biosphere. It emphasizes on study tools, microbial taxonomy and the fundamentals of microbial activities and interactions within their communities and environment as well as on the related food web dynamics and biogeochemical cycling. The work exceeds the traditional domain of microbial ecology by revisiting the evolution of cellular prokaryotes and eukaryotes and stressing the general principles of ecology. The overview of the topics, authored by more than 80 specialists, is one of the broadest in the field of environmental microbiology. The overview of the topics, authored by more than 80 specialists, is one of the broadest in the field of environmental microbiology.
Download or read book Beneficial Microbes in Agro Ecology written by N. Amaresan and published by Academic Press. This book was released on 2020-05-14 with total page 936 pages. Available in PDF, EPUB and Kindle. Book excerpt: Beneficial Microbes in Agro-Ecology: Bacteria and Fungi is a complete resource on the agriculturally important beneficial microflora used in agricultural production technologies. Included are 30 different bacterial genera relevant in the sustainability, mechanisms, and beneficial natural processes that enhance soil fertility and plant growth. The second part of the book discusses 23 fungal genera used in agriculture for the management of plant diseases and plant growth promotion. Covering a wide range of bacteria and fungi on biocontrol and plant growth promoting properties, the book will help researchers, academics and advanced students in agro-ecology, plant microbiology, pathology, entomology, and nematology. - Presents a comprehensive collection of agriculturally important bacteria and fungi - Provides foundational knowledge of each core organism utilized in agro-ecology - Identifies the genera of agriculturally important microorganisms
Download or read book Modern Soil Microbiology Second Edition written by Jan Dirk van Elsas and published by CRC Press. This book was released on 2006-12-21 with total page 704 pages. Available in PDF, EPUB and Kindle. Book excerpt: In the ten years since the publication of Modern Soil Microbiology, the study of soil microbiology has significantly changed, both in the understanding of the diversity and function of soil microbial communities and in research methods. Ideal for students in a variety of disciplines, this second edition provides a cutting-edge examination of a fascinating discipline that encompasses ecology, physiology, genetics, molecular biology, and biotechnology, and makes use of biochemical and biophysical approaches. The chapters cover topics ranging from the fundamental to the applied and describe the use of advanced methods that have provided a great thrust to the discipline of soil microbiology. Using the latest molecular analyses, they integrate principles of soil microbiology with novel insights into the physiology of soil microorganisms. The authors discuss the soil and rhizosphere as habitats for microorganisms, then go on to describe the different microbial groups, their adaptive responses, and their respective processes in interactive and functional terms. The book highlights a range of applied aspects of soil microbiology, including the nature of disease-suppressive soils, the use of biological control agents, biopesticides and bioremediation agents, and the need for correct statistics and experimentation in the analyses of the data obtained from soil systems.
Download or read book Below Ground Interactions in Ecological Processes written by Oren Shelef and published by Frontiers Media SA. This book was released on 2020-01-29 with total page 237 pages. Available in PDF, EPUB and Kindle. Book excerpt: Aboveground interactions between plants and organisms have served as a foundation of ecological and evolutionary theories. Accumulating evidence suggests that interactions that occur belowground can have immense influence on eco-evolutionary dynamics of plants. Despite the increasing awareness among scientists of the importance of belowground interactions for plant performance and community dynamics, they have received considerably less theoretical and empirical attention compared to aboveground interactions. In this eBook we aim to highlight the overlooked roles of belowground interactions and outline their myriad ecological roles, from affecting soil health through impacting plant interactions with above-ground fauna. This eBook with 18 articles and an Editorial includes conceptual contribution together with original research work. The chapters are exploring the roles of belowground biotic interactions, in the context of ecological processes both below- and above-ground.
