Download or read book A Dictionary based Denoising Method Toward a Robust Segmentation of Noisy and Densely Packed Nuclei in 3D Biological Microscopy Images written by Lamees Nasser Khalafallah Mahmoud and published by . This book was released on 2019 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Cells are the basic building blocks of all living organisms. All living organisms share life processes such as growth and development, movement, nutrition, excretion, reproduction, respiration and response to the environment. In cell biology research, understanding cells structure and function is essential for developing and testing new drugs. In addition, cell biology research provides a powerful tool to study embryo development. Furthermore, it helps the scientific research community to understand the effects of mutations and various diseases. Time-Lapse Fluorescence Microscopy (TLFM) is one of the most appreciated imaging techniques which can be used in live-cell imaging experiments to quantify various characteristics of cellular processes, i.e., cell survival, proliferation, migration, and differentiation. In TLFM imaging, not only spatial information is acquired, but also temporal information obtained by repeating imaging of a labeled sample at specific time points, as well as spectral information, that produces up to five-dimensional (X, Y, Z + Time + Channel) images. Typically, the generated datasets consist of several (hundreds or thousands) images, each containing hundreds to thousands of objects to be analyzed. To perform high-throughput quantification of cellular processes, nuclei segmentation and tracking should be performed in an automated manner. Nevertheless, nuclei segmentation and tracking are challenging tasks due to embedded noise, intensity inhomogeneity, shape variation as well as a weak boundary of nuclei. Although several nuclei segmentation approaches have been reported in the literature, dealing with embedded noise remains the most challenging part of any segmentation algorithm. We propose a novel 3D denoising algorithm, based on unsupervised dictionary learning and sparse representation, that can both enhance very faint and noisy nuclei, in addition, it simultaneously detects nuclei position accurately. Furthermore, our method is based on a limited number of parameters, with only one being critical, which is the approximate size of the objects of interest. The framework of the proposed method comprises image denoising, nuclei detection, and segmentation. In the denoising step, an initial dictionary is constructed by selecting random patches from the raw image then an iterative technique is implemented to update the dictionary and obtain the final one which is less noisy. Next, a detection map, based on the dictionary coefficients used to denoise the image, is used to detect marker points. Afterward, a thresholding-based approach is proposed to get the segmentation mask. Finally, a marker-controlled watershed approach is used to get the final nuclei segmentation result. We generate 3D synthetic images to study the effect of the few parameters of our method on cell nuclei detection and segmentation, and to understand the overall mechanism for selecting and tuning the significant parameters of the several datasets. These synthetic images have low contrast and low signal to noise ratio. Furthermore, they include touching spheres where these conditions simulate the same characteristics exist in the real datasets. The proposed framework shows that integrating our denoising method along with classical segmentation method works properly in the context of the most challenging cases. To evaluate the performance of the proposed method, two datasets from the cell tracking challenge are extensively tested. Across all datasets, the proposed method achieved very promising results with 96.96% recall for the C.elegans dataset. Besides, in the Drosophila dataset, our method achieved very high recall (99.3%).

Download or read book Transmission Electron Microscopy written by C. Barry Carter and published by Springer. This book was released on 2016-08-24 with total page 543 pages. Available in PDF, EPUB and Kindle. Book excerpt: This text is a companion volume to Transmission Electron Microscopy: A Textbook for Materials Science by Williams and Carter. The aim is to extend the discussion of certain topics that are either rapidly changing at this time or that would benefit from more detailed discussion than space allowed in the primary text. World-renowned researchers have contributed chapters in their area of expertise, and the editors have carefully prepared these chapters to provide a uniform tone and treatment for this exciting material. The book features an unparalleled collection of color figures showcasing the quality and variety of chemical data that can be obtained from today’s instruments, as well as key pitfalls to avoid. As with the previous TEM text, each chapter contains two sets of questions, one for self assessment and a second more suitable for homework assignments. Throughout the book, the style follows that of Williams & Carter even when the subject matter becomes challenging—the aim is always to make the topic understandable by first-year graduate students and others who are working in the field of Materials Science Topics covered include sources, in-situ experiments, electron diffraction, Digital Micrograph, waves and holography, focal-series reconstruction and direct methods, STEM and tomography, energy-filtered TEM (EFTEM) imaging, and spectrum imaging. The range and depth of material makes this companion volume essential reading for the budding microscopist and a key reference for practicing researchers using these and related techniques.

Download or read book Medical Image Analysis written by Alejandro Frangi and published by Academic Press. This book was released on 2023-09-20 with total page 700 pages. Available in PDF, EPUB and Kindle. Book excerpt: Medical Image Analysis presents practical knowledge on medical image computing and analysis as written by top educators and experts. This text is a modern, practical, self-contained reference that conveys a mix of fundamental methodological concepts within different medical domains. Sections cover core representations and properties of digital images and image enhancement techniques, advanced image computing methods (including segmentation, registration, motion and shape analysis), machine learning, how medical image computing (MIC) is used in clinical and medical research, and how to identify alternative strategies and employ software tools to solve typical problems in MIC. Provides an authoritative description of key concepts and methods Includes tutorial-based sections that clearly explain principles and their application to different medical domains Presents a representative selection of topics to match a modern and relevant approach to medical image computing

Download or read book Deep Learning for Medical Image Analysis written by S. Kevin Zhou and published by Academic Press. This book was released on 2023-12-01 with total page 544 pages. Available in PDF, EPUB and Kindle. Book excerpt: Deep Learning for Medical Image Analysis, Second Edition is a great learning resource for academic and industry researchers and graduate students taking courses on machine learning and deep learning for computer vision and medical image computing and analysis. Deep learning provides exciting solutions for medical image analysis problems and is a key method for future applications. This book gives a clear understanding of the principles and methods of neural network and deep learning concepts, showing how the algorithms that integrate deep learning as a core component are applied to medical image detection, segmentation, registration, and computer-aided analysis. · Covers common research problems in medical image analysis and their challenges · Describes the latest deep learning methods and the theories behind approaches for medical image analysis · Teaches how algorithms are applied to a broad range of application areas including cardiac, neural and functional, colonoscopy, OCTA applications and model assessment · Includes a Foreword written by Nicholas Ayache

Download or read book Image and Signal Processing written by Abderrahim El Moataz and published by Springer Nature. This book was released on 2020-07-08 with total page 388 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume constitutes the refereed proceedings of the 9th International Conference on Image and Signal Processing, ICISP 2020, which was due to be held in Marrakesh, Morocco, in June 2020. The conference was cancelled due to the COVID-19 pandemic. The 40 revised full papers were carefully reviewed and selected from 84 submissions. The contributions presented in this volume were organized in the following topical sections: digital cultural heritage & color and spectral imaging; data and image processing for precision agriculture; machine learning application and innovation; biomedical imaging; deep learning and applications; pattern recognition; segmentation and retrieval; mathematical imaging & signal processing.

Download or read book Computer Vision Metrics written by Scott Krig and published by Apress. This book was released on 2014-06-14 with total page 498 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computer Vision Metrics provides an extensive survey and analysis of over 100 current and historical feature description and machine vision methods, with a detailed taxonomy for local, regional and global features. This book provides necessary background to develop intuition about why interest point detectors and feature descriptors actually work, how they are designed, with observations about tuning the methods for achieving robustness and invariance targets for specific applications. The survey is broader than it is deep, with over 540 references provided to dig deeper. The taxonomy includes search methods, spectra components, descriptor representation, shape, distance functions, accuracy, efficiency, robustness and invariance attributes, and more. Rather than providing ‘how-to’ source code examples and shortcuts, this book provides a counterpoint discussion to the many fine opencv community source code resources available for hands-on practitioners.

Download or read book Deep Learning and Data Labeling for Medical Applications written by Gustavo Carneiro and published by Springer. This book was released on 2016-10-07 with total page 289 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of two workshops held at the 19th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2016, in Athens, Greece, in October 2016: the First Workshop on Large-Scale Annotation of Biomedical Data and Expert Label Synthesis, LABELS 2016, and the Second International Workshop on Deep Learning in Medical Image Analysis, DLMIA 2016. The 28 revised regular papers presented in this book were carefully reviewed and selected from a total of 52 submissions. The 7 papers selected for LABELS deal with topics from the following fields: crowd-sourcing methods; active learning; transfer learning; semi-supervised learning; and modeling of label uncertainty.The 21 papers selected for DLMIA span a wide range of topics such as image description; medical imaging-based diagnosis; medical signal-based diagnosis; medical image reconstruction and model selection using deep learning techniques; meta-heuristic techniques for fine-tuning parameter in deep learning-based architectures; and applications based on deep learning techniques.

Download or read book Proceedings of International Conference on Intelligent Computing Information and Control Systems written by A. Pasumpon Pandian and published by Springer Nature. This book was released on 2021-01-24 with total page 972 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is a collection of papers presented at the International Conference on Intelligent Computing, Information and Control Systems (ICICCS 2020). It encompasses various research works that help to develop and advance the next-generation intelligent computing and control systems. The book integrates the computational intelligence and intelligent control systems to provide a powerful methodology for a wide range of data analytics issues in industries and societal applications. The book also presents the new algorithms and methodologies for promoting advances in common intelligent computing and control methodologies including evolutionary computation, artificial life, virtual infrastructures, fuzzy logic, artificial immune systems, neural networks and various neuro-hybrid methodologies. This book is pragmatic for researchers, academicians and students dealing with mathematically intransigent problems.

Download or read book NAECON 2018 IEEE National Aerospace and Electronics Conference written by IEEE Staff and published by . This book was released on 2018-07-23 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: NAECON is the oldest and premier IEEE Conference presenting research in all aspects of theory, design and applications of aerospace systems and sensors

Download or read book Magnetic Resonance Image Reconstruction written by Mehmet Akcakaya and published by Academic Press. This book was released on 2022-11-04 with total page 518 pages. Available in PDF, EPUB and Kindle. Book excerpt: Magnetic Resonance Image Reconstruction: Theory, Methods and Applications presents the fundamental concepts of MR image reconstruction, including its formulation as an inverse problem, as well as the most common models and optimization methods for reconstructing MR images. The book discusses approaches for specific applications such as non-Cartesian imaging, under sampled reconstruction, motion correction, dynamic imaging and quantitative MRI. This unique resource is suitable for physicists, engineers, technologists and clinicians with an interest in medical image reconstruction and MRI. Explains the underlying principles of MRI reconstruction, along with the latest research“/li> Gives example codes for some of the methods presented Includes updates on the latest developments, including compressed sensing, tensor-based reconstruction and machine learning based reconstruction

Download or read book Explainable AI Interpreting Explaining and Visualizing Deep Learning written by Wojciech Samek and published by Springer Nature. This book was released on 2019-09-10 with total page 435 pages. Available in PDF, EPUB and Kindle. Book excerpt: The development of “intelligent” systems that can take decisions and perform autonomously might lead to faster and more consistent decisions. A limiting factor for a broader adoption of AI technology is the inherent risks that come with giving up human control and oversight to “intelligent” machines. For sensitive tasks involving critical infrastructures and affecting human well-being or health, it is crucial to limit the possibility of improper, non-robust and unsafe decisions and actions. Before deploying an AI system, we see a strong need to validate its behavior, and thus establish guarantees that it will continue to perform as expected when deployed in a real-world environment. In pursuit of that objective, ways for humans to verify the agreement between the AI decision structure and their own ground-truth knowledge have been explored. Explainable AI (XAI) has developed as a subfield of AI, focused on exposing complex AI models to humans in a systematic and interpretable manner. The 22 chapters included in this book provide a timely snapshot of algorithms, theory, and applications of interpretable and explainable AI and AI techniques that have been proposed recently reflecting the current discourse in this field and providing directions of future development. The book is organized in six parts: towards AI transparency; methods for interpreting AI systems; explaining the decisions of AI systems; evaluating interpretability and explanations; applications of explainable AI; and software for explainable AI.

Download or read book Modern Computational Intelligence Methods for the Interpretation of Medical Images written by Ryszard Tadeusiewicz and published by Springer Science & Business Media. This book was released on 2008-01-03 with total page 210 pages. Available in PDF, EPUB and Kindle. Book excerpt: This work by two accomplished Polish researchers provides medical technicians and researchers alike with detailed descriptions of up-to-date methods used for computer processing and interpretation of medical images. The broad scope of the book takes in images acquisition, storing with compression, processing, analysis, recognition and also its automatic understanding. The introduction provides a general overview of the computer vision methods designed for medical images.

Download or read book 3D Printing and Biofabrication written by Aleksandr Ovsianikov and published by Springer. This book was released on 2018-06-08 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume provides an in-depth introduction to 3D printing and biofabrication and covers the recent advances in additive manufacturing for tissue engineering. The book is divided into two parts, the first part on 3D printing discusses conventional approaches in additive manufacturing aimed at fabrication of structures, which are seeded with cells in a subsequent step. The second part on biofabrication presents processes which integrate living cells into the fabrication process.

Download or read book Data Mining in Bioinformatics written by Jason T. L. Wang and published by Springer Science & Business Media. This book was released on 2005-09-02 with total page 337 pages. Available in PDF, EPUB and Kindle. Book excerpt: Written especially for computer scientists, all necessary biology is explained. Presents new techniques on gene expression data mining, gene mapping for disease detection, and phylogenetic knowledge discovery.

Download or read book Proceedings of the Scientific Practical Conference Research and Development 2016 written by K. V. Anisimov and published by Springer. This book was released on 2017-12-04 with total page 715 pages. Available in PDF, EPUB and Kindle. Book excerpt: This open access book relates to the III Annual Conference hosted by The Ministry of Education and Science of the Russian Federation in December 2016. This event has summarized, analyzed and discussed the interim results, academic outputs and scientific achievements of the Russian Federal Targeted Programme “Research and Development in Priority Areas of Development of the Russian Scientific and Technological Complex for 2014–2020.” It contains 75 selected papers from 6 areas considered priority by the Federal Targeted Programme: computer science, ecology & environment sciences; energy and energy efficiency; lifesciences; nanoscience & nanotechnology and transport & communications. The chapters report the results of the 3-years research projects supported by the Programme and finalized in 2016.

Download or read book Recent Trends in Image Processing and Pattern Recognition written by K. C. Santosh and published by Springer. This book was released on 2019-07-19 with total page 717 pages. Available in PDF, EPUB and Kindle. Book excerpt: This three-volume set constitutes the refereed proceedings of the Second International Conference on Recent Trends in Image Processing and Pattern Recognition (RTIP2R) 2018, held in Solapur, India, in December 2018. The 173 revised full papers presented were carefully reviewed and selected from 374 submissions. The papers are organized in topical sections in the tree volumes. Part I: computer vision and pattern recognition; machine learning and applications; and image processing. Part II: healthcare and medical imaging; biometrics and applications. Part III: document image analysis; image analysis in agriculture; and data mining, information retrieval and applications.

Download or read book The Deep Learning Revolution written by Terrence J. Sejnowski and published by MIT Press. This book was released on 2018-10-23 with total page 354 pages. Available in PDF, EPUB and Kindle. Book excerpt: How deep learning—from Google Translate to driverless cars to personal cognitive assistants—is changing our lives and transforming every sector of the economy. The deep learning revolution has brought us driverless cars, the greatly improved Google Translate, fluent conversations with Siri and Alexa, and enormous profits from automated trading on the New York Stock Exchange. Deep learning networks can play poker better than professional poker players and defeat a world champion at Go. In this book, Terry Sejnowski explains how deep learning went from being an arcane academic field to a disruptive technology in the information economy. Sejnowski played an important role in the founding of deep learning, as one of a small group of researchers in the 1980s who challenged the prevailing logic-and-symbol based version of AI. The new version of AI Sejnowski and others developed, which became deep learning, is fueled instead by data. Deep networks learn from data in the same way that babies experience the world, starting with fresh eyes and gradually acquiring the skills needed to navigate novel environments. Learning algorithms extract information from raw data; information can be used to create knowledge; knowledge underlies understanding; understanding leads to wisdom. Someday a driverless car will know the road better than you do and drive with more skill; a deep learning network will diagnose your illness; a personal cognitive assistant will augment your puny human brain. It took nature many millions of years to evolve human intelligence; AI is on a trajectory measured in decades. Sejnowski prepares us for a deep learning future.