Download or read book Whole Genome Shotgun Assembly in Theory and Practice written by Jarrod Andrew Chapman and published by . This book was released on 2004 with total page 284 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Whole genome Shotgun Optical Mapping of Rhodobacter Sphaeroides Strain 2 4 1 and Its Use for Whole genome Shotgun Sequence Assembly written by and published by . This book was released on 2003 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Rhodobacter sphaeroides 2.4.1 is a facultative photoheterotrophic bacterium with tremendous metabolic diversity, which has significantly contributed to our understanding of the molecular genetics of photosynthesis, photoheterotrophy, nitrogen fixation, hydrogen metabolism, carbon dioxide fixation, taxis, and tetrapyrrole biosynthesis. To further understand this remarkable bacterium, and to accelerate an ongoing sequencing project, two whole-genome restriction maps (EcoRI and HindIII) of R. sphaeroides strain 2.4.1 were constructed using shotgun optical mapping. The approach directly mapped genomic DNA by the random mapping of single molecules. The two maps were used to facilitate sequence assembly by providing an optical scaffold for high-resolution alignment and verification of sequence contigs. Our results show that such maps facilitated the closure of sequence gaps by the early detection of nascent sequence contigs during the course of the whole-genome shotgun sequencing process.
Download or read book Theory And Practice Of Computation Proceedings Of Workshop On Computation Theory And Practice Wctp2015 written by Shin-ya Nishizaki and published by World Scientific. This book was released on 2017-02-24 with total page 250 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is the proceedings of the Fourth Workshop on Computing: Theory and Practice, WCTP 2015 devoted to theoretical and practical approaches to computation. This workshop was organized by four top universities in Japan and the Philippines: Tokyo Institute of Technology, Osaka University, University of the Philippines - Diliman, and De La Salle University. The proceedings provides a view of the current movement in research in these two countries. The papers included in the proceedings focus on the two research areas: theoretical and practical aspects of computation.
Download or read book Potato Breeding Theory and Practice written by John E. Bradshaw and published by Springer Nature. This book was released on 2021-04-09 with total page 571 pages. Available in PDF, EPUB and Kindle. Book excerpt: The potato (Solanum tuberosum) is the world’s fourth most important food crop after maize, rice and wheat with 377 million tonnes fresh-weight of tubers produced in 2016 from 19.2 million hectares of land, in 163 countries, giving a global average yield of 19.6 t ha-1 (http://faostat.fao.org). About 62% of production (234 million tonnes) was in Asia (191), Africa (25) and Latin America (18) as a result of steady increases in recent years, particularly in China and India. As a major food crop, the potato has an important role to play in the United Nations “2030 Agenda for Sustainable Development” which started on 1 January 2016 (http://faostat.fao.org). By 2030 the aim is to “ensure access by all people, in particular the poor and people in vulnerable situations, including infants, to safe, nutritious and sufficient food all year round”. By then, the world population is expected to reach 8.5 billion and continue to increase to 9.7 billion in 2050. For potatoes, the need is to increase production and improve nutritional value during a period of climate change, a key aspect of which will be the breeding of new cultivars for a wide range of target environments and consumers. The aim of the book is to help this endeavour by providing detailed information in three parts on both the theory and practice of potato breeding. Part I deals with the history of potato improvement and with potato genetics. Part II deals with breeding objectives, divided into improving yield, quality traits and resistance to the most important diseases and pests of potatoes. Part III deals with breeding methods: first, the use of landraces and wild relatives of potato in introgression breeding, base broadening and population improvement; second, breeding clonally propagated cultivars as a way to deliver potato improvement to farmers’ fields; third, as an alternative, breeding potato cultivars for propagation through true potato seed; and fourth, gene editing and genetic transformation as ways of making further improvements to already successful and widely grown cultivars. Included are marker-assisted introgression and selection of specific alleles, genomic selection of many unspecified alleles and diploid F1 hybrid breeding.
Download or read book Polyploid Population Genetics and Evolution From Theory to Practice written by Hans D. Daetwyler and published by Frontiers Media SA. This book was released on 2020-01-28 with total page 173 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Systems Biology written by Isidore Rigoutsos and published by Oxford University Press. This book was released on 2006-09-14 with total page 336 pages. Available in PDF, EPUB and Kindle. Book excerpt: The advent of genome sequencing and associated technologies has transformed biologists' ability to measure important classes of molecules and their interactions. This expanded cellular view has opened the field to thousands of interactions that previously were outside the researchers' reach. The processing and interpretation of these new vast quantities of interconnected data call for sophisticated mathematical models and computational methods. Systems biology meets this need by combining genomic knowledge with theoretical, experimental and computational approaches from a number of traditional scientific disciplines to create a mechanistic explanation of cellular systems and processes. Systems Biology I: Genomics and Systems Biology II: Networks, Models, and Applications offer a much-needed study of genomic principles and their associated networks and models. Written for a wide audience, each volume presents a timely compendium of essential information that is necessary for a comprehensive study of the subject. The chapters in the two volumes reflect the hierarchical nature of systems biology. Chapter authors-world-recognized experts in their fields-provide authoritative discussions on a wide range of topics along this hierarchy. Volume I explores issues pertaining to genomics that range from prebiotic chemistry to noncoding RNAs. Volume II covers an equally wide spectrum, from mass spectrometry to embryonic stem cells. The two volumes are meant to provide a reliable reference for students and researchers alike.
Download or read book Dissertation Abstracts International written by and published by . This book was released on 2005 with total page 842 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Genome Research written by and published by . This book was released on 2008 with total page 774 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Functional Microbiomes written by David Bohan and published by Academic Press. This book was released on 2022-11-22 with total page 394 pages. Available in PDF, EPUB and Kindle. Book excerpt: Functional Microbiomes, Volume 67 in the Advances in Ecological Research series, highlights new advances in the field, with this new release highlighting timely content written by an international board of authors. Sections cover the Linking microbial body size to community co-occurrences and stability at multiple geographical scales in agricultural soils, The functional microbiome of grapevine throughout plant evolutionary history and lifetime, Compendium of analytical methods for sampling, characterisation and quantification of bioaerosols, The microbial solution to oil sand pollution: understanding the microbiomes, metabolic pathways and mechanisms involved in naphthenic acid (NA) biodegradation, The Gut Microbiome in Health and Disease: Inflammatory Bowel Diseases, and The need to understand how multiple chemical stressors impact freshwater aquatic microbiomes Provides the authority and expertise of leading contributors from an international board of authors Presents the latest release in the Advances in Ecological Research series Updated release includes the latest information on Microbiome Regulated Interactions and Behaviours
Download or read book Past Present and Future of Sequence Alignment written by Krishna M. Roskin and published by . This book was released on 2011 with total page 376 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Principles of Biology written by Lisa Bartee and published by . This book was released on 2017 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: The Principles of Biology sequence (BI 211, 212 and 213) introduces biology as a scientific discipline for students planning to major in biology and other science disciplines. Laboratories and classroom activities introduce techniques used to study biological processes and provide opportunities for students to develop their ability to conduct research.
Download or read book A Tale of Three Next Generation Sequencing Platforms written by Applied Research Press and published by Createspace Independent Publishing Platform. This book was released on 2015-07-24 with total page 42 pages. Available in PDF, EPUB and Kindle. Book excerpt: Next generation sequencing (NGS) technology has revolutionized genomic and genetic research. The pace of change in this area is rapid with three major new sequencing platforms having been released in 2011: Ion Torrent's PGM, Pacific Biosciences' RS and the Illumina MiSeq. Here we compare the results obtained with those platforms to the performance of the Illumina HiSeq, the current market leader. In order to compare these platforms, and get sufficient coverage depth to allow meaningful analysis, we have sequenced a set of 4 microbial genomes with mean GC content ranging from 19.3 to 67.7%. Together, these represent a comprehensive range of genome content. Here we report our analysis of that sequence data in terms of coverage distribution, bias, GC distribution, variant detection and accuracy. All three fast turnaround sequencers evaluated here were able to generate usable sequence. However there are key differences between the quality of that data and the applications it will support. Proceeds from the sale of this book go to the support of an elderly disabled person.
Download or read book Index Medicus written by and published by . This book was released on 2003 with total page 1748 pages. Available in PDF, EPUB and Kindle. Book excerpt: Vols. for 1963- include as pt. 2 of the Jan. issue: Medical subject headings.
Download or read book Functional Metagenomics Tools and Applications written by Trevor C. Charles and published by Springer. This book was released on 2017-10-09 with total page 256 pages. Available in PDF, EPUB and Kindle. Book excerpt: In this book, the latest tools available for functional metagenomics research are described.This research enables scientists to directly access the genomes from diverse microbial genomes at one time and study these “metagenomes”. Using the modern tools of genome sequencing and cloning, researchers have now been able to harness this astounding metagenomic diversity to understand and exploit the diverse functions of microorganisms. Leading scientists from around the world demonstrate how these approaches have been applied in many different settings, including aquatic and terrestrial habitats, microbiomes, and many more environments. This is a highly informative and carefully presented book, providing microbiologists with a summary of the latest functional metagenomics literature on all specific habitats.
Download or read book The New Science of Metagenomics written by National Research Council and published by National Academies Press. This book was released on 2007-06-24 with total page 170 pages. Available in PDF, EPUB and Kindle. Book excerpt: Although we can't usually see them, microbes are essential for every part of human life-indeed all life on Earth. The emerging field of metagenomics offers a new way of exploring the microbial world that will transform modern microbiology and lead to practical applications in medicine, agriculture, alternative energy, environmental remediation, and many others areas. Metagenomics allows researchers to look at the genomes of all of the microbes in an environment at once, providing a "meta" view of the whole microbial community and the complex interactions within it. It's a quantum leap beyond traditional research techniques that rely on studying-one at a time-the few microbes that can be grown in the laboratory. At the request of the National Science Foundation, five Institutes of the National Institutes of Health, and the Department of Energy, the National Research Council organized a committee to address the current state of metagenomics and identify obstacles current researchers are facing in order to determine how to best support the field and encourage its success. The New Science of Metagenomics recommends the establishment of a "Global Metagenomics Initiative" comprising a small number of large-scale metagenomics projects as well as many medium- and small-scale projects to advance the technology and develop the standard practices needed to advance the field. The report also addresses database needs, methodological challenges, and the importance of interdisciplinary collaboration in supporting this new field.
Download or read book Nucleic Acids as Molecular Diagnostics written by Andreas Keller and published by John Wiley & Sons. This book was released on 2015-01-12 with total page 390 pages. Available in PDF, EPUB and Kindle. Book excerpt: By integrating technology, supporting infrastructure and efficient application, the all-in-one guide presents molecular diagnostics as an essential component of modern, personalized clinical practice. It considers all important aspects, from the hardware and software needed, to recent improvements in blood- and non-blood-based biomarker tests. Chapters on ethical challenges and a look at current trends and the latest innovations are also included. Bridging the gap between industry and academia, this is a highly useful resource for practitioners as well as for developers of modern, DNA- and RNA-based molecular diagnostics.
Download or read book Bioinformatics for Beginners written by Supratim Choudhuri and published by Elsevier. This book was released on 2014-05-09 with total page 238 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bioinformatics for Beginners: Genes, Genomes, Molecular Evolution, Databases and Analytical Tools provides a coherent and friendly treatment of bioinformatics for any student or scientist within biology who has not routinely performed bioinformatic analysis. The book discusses the relevant principles needed to understand the theoretical underpinnings of bioinformatic analysis and demonstrates, with examples, targeted analysis using freely available web-based software and publicly available databases. Eschewing non-essential information, the work focuses on principles and hands-on analysis, also pointing to further study options. Avoids non-essential coverage, yet fully describes the field for beginners Explains the molecular basis of evolution to place bioinformatic analysis in biological context Provides useful links to the vast resource of publicly available bioinformatic databases and analysis tools Contains over 100 figures that aid in concept discovery and illustration
