Download or read book The Applied Data Science Workshop On Medical Datasets Using Machine Learning and Deep Learning with Python GUI written by Vivian Siahaan and published by BALIGE PUBLISHING. This book was released on with total page 1574 pages. Available in PDF, EPUB and Kindle. Book excerpt: Workshop 1: Heart Failure Analysis and Prediction Using Scikit-Learn, Keras, and TensorFlow with Python GUI Cardiovascular diseases (CVDs) are the number 1 cause of death globally taking an estimated 17.9 million lives each year, which accounts for 31% of all deaths worldwide. Heart failure is a common event caused by CVDs and this dataset contains 12 features that can be used to predict mortality by heart failure. People with cardiovascular disease or who are at high cardiovascular risk (due to the presence of one or more risk factors such as hypertension, diabetes, hyperlipidaemia or already established disease) need early detection and management wherein a machine learning models can be of great help. Dataset used in this project is from Davide Chicco, Giuseppe Jurman. Machine learning can predict survival of patients with heart failure from serum creatinine and ejection fraction alone. BMC Medical Informatics and Decision Making 20, 16 (2020). Attribute information in the dataset are as follows: age: Age; anaemia: Decrease of red blood cells or hemoglobin (boolean); creatinine_phosphokinase: Level of the CPK enzyme in the blood (mcg/L); diabetes: If the patient has diabetes (boolean); ejection_fraction: Percentage of blood leaving the heart at each contraction (percentage); high_blood_pressure: If the patient has hypertension (boolean); platelets: Platelets in the blood (kiloplatelets/mL); serum_creatinine: Level of serum creatinine in the blood (mg/dL); serum_sodium: Level of serum sodium in the blood (mEq/L); sex: Woman or man (binary); smoking: If the patient smokes or not (boolean); time: Follow-up period (days); and DEATH_EVENT: If the patient deceased during the follow-up period (boolean). The models used in this project are K-Nearest Neighbor, Random Forest, Naive Bayes, Logistic Regression, Decision Tree, Support Vector Machine, Adaboost, LGBM classifier, Gradient Boosting, XGB classifier, MLP classifier, and CNN 1D. Finally, you will develop a GUI using PyQt5 to plot boundary decision, ROC, distribution of features, feature importance, cross validation score, and predicted values versus true values, confusion matrix, learning curve, performace of the model, scalability of the model, training loss, and training accuracy. WORKSHOP 2: Cervical Cancer Classification and Prediction Using Machine Learning and Deep Learning with Python GUI About 11,000 new cases of invasive cervical cancer are diagnosed each year in the U.S. However, the number of new cervical cancer cases has been declining steadily over the past decades. Although it is the most preventable type of cancer, each year cervical cancer kills about 4,000 women in the U.S. and about 300,000 women worldwide. Numerous studies report that high poverty levels are linked with low screening rates. In addition, lack of health insurance, limited transportation, and language difficulties hinder a poor woman’s access to screening services. Human papilloma virus (HPV) is the main risk factor for cervical cancer. In adults, the most important risk factor for HPV is sexual activity with an infected person. Women most at risk for cervical cancer are those with a history of multiple sexual partners, sexual intercourse at age 17 years or younger, or both. A woman who has never been sexually active has a very low risk for developing cervical cancer. Sexual activity with multiple partners increases the likelihood of many other sexually transmitted infections (chlamydia, gonorrhea, syphilis). Studies have found an association between chlamydia and cervical cancer risk, including the possibility that chlamydia may prolong HPV infection. Therefore, early detection of cervical cancer using machine and deep learning models can be of great help. The dataset used in this project is obtained from UCI Repository and kindly acknowledged. This file contains a List of Risk Factors for Cervical Cancer leading to a Biopsy Examination. The models used in this project are K-Nearest Neighbor, Random Forest, Naive Bayes, Logistic Regression, Decision Tree, Support Vector Machine, Adaboost, LGBM classifier, Gradient Boosting, XGB classifier, MLP classifier, and CNN 1D. Finally, you will develop a GUI using PyQt5 to plot boundary decision, ROC, distribution of features, feature importance, cross validation score, and predicted values versus true values, confusion matrix, learning curve, performace of the model, scalability of the model, training loss, and training accuracy. WORKSHOP 3: Chronic Kidney Disease Classification and Prediction Using Machine Learning and Deep Learning with Python GUI Chronic kidney disease is the longstanding disease of the kidneys leading to renal failure. The kidneys filter waste and excess fluid from the blood. As kidneys fail, waste builds up. Symptoms develop slowly and aren't specific to the disease. Some people have no symptoms at all and are diagnosed by a lab test. Medication helps manage symptoms. In later stages, filtering the blood with a machine (dialysis) or a transplant may be required The dataset used in this project was taken over a 2-month period in India with 25 features (eg, red blood cell count, white blood cell count, etc). The target is the 'classification', which is either 'ckd' or 'notckd' - ckd=chronic kidney disease. It contains measures of 24 features for 400 people. Quite a lot of features for just 400 samples. There are 14 categorical features, while 10 are numerical. The dataset needs cleaning: in that it has NaNs and the numeric features need to be forced to floats. Attribute Information: Age(numerical) age in years; Blood Pressure(numerical) bp in mm/Hg; Specific Gravity(categorical) sg - (1.005,1.010,1.015,1.020,1.025); Albumin(categorical) al - (0,1,2,3,4,5); Sugar(categorical) su - (0,1,2,3,4,5); Red Blood Cells(categorical) rbc - (normal,abnormal); Pus Cell (categorical) pc - (normal,abnormal); Pus Cell clumps(categorical) pcc - (present, notpresent); Bacteria(categorical) ba - (present,notpresent); Blood Glucose Random(numerical) bgr in mgs/dl; Blood Urea(numerical) bu in mgs/dl; Serum Creatinine(numerical) sc in mgs/dl; Sodium(numerical) sod in mEq/L; Potassium(numerical) pot in mEq/L; Hemoglobin(numerical) hemo in gms; Packed Cell Volume(numerical); White Blood Cell Count(numerical) wc in cells/cumm; Red Blood Cell Count(numerical) rc in millions/cmm; Hypertension(categorical) htn - (yes,no); Diabetes Mellitus(categorical) dm - (yes,no); Coronary Artery Disease(categorical) cad - (yes,no); Appetite(categorical) appet - (good,poor); Pedal Edema(categorical) pe - (yes,no); Anemia(categorical) ane - (yes,no); and Class (categorical) class - (ckd,notckd). The models used in this project are K-Nearest Neighbor, Random Forest, Naive Bayes, Logistic Regression, Decision Tree, Support Vector Machine, Adaboost, LGBM classifier, Gradient Boosting, XGB classifier, MLP classifier, and CNN 1D. Finally, you will develop a GUI using PyQt5 to plot boundary decision, ROC, distribution of features, feature importance, cross validation score, and predicted values versus true values, confusion matrix, learning curve, performace of the model, scalability of the model, training loss, and training accuracy. WORKSHOP 4: Lung Cancer Classification and Prediction Using Machine Learning and Deep Learning with Python GUI The effectiveness of cancer prediction system helps the people to know their cancer risk with low cost and it also helps the people to take the appropriate decision based on their cancer risk status. The data is collected from the website online lung cancer prediction system. Total number of attributes in the dataset is 16, while number of instances is 309. Following are attribute information of dataset: Gender: M(male), F(female); Age: Age of the patient; Smoking: YES=2 , NO=1; Yellow fingers: YES=2 , NO=1; Anxiety: YES=2 , NO=1; Peer_pressure: YES=2 , NO=1; Chronic Disease: YES=2 , NO=1; Fatigue: YES=2 , NO=1; Allergy: YES=2 , NO=1; Wheezing: YES=2 , NO=1; Alcohol: YES=2 , NO=1; Coughing: YES=2 , NO=1; Shortness of Breath: YES=2 , NO=1; Swallowing Difficulty: YES=2 , NO=1; Chest pain: YES=2 , NO=1; and Lung Cancer: YES , NO. The models used in this project are K-Nearest Neighbor, Random Forest, Naive Bayes, Logistic Regression, Decision Tree, Support Vector Machine, Adaboost, LGBM classifier, Gradient Boosting, XGB classifier, MLP classifier, and CNN 1D. Finally, you will develop a GUI using PyQt5 to plot boundary decision, ROC, distribution of features, feature importance, cross validation score, and predicted values versus true values, confusion matrix, learning curve, performace of the model, scalability of the model, training loss, and training accuracy. WORKSHOP 5: Alzheimer’s Disease Classification and Prediction Using Machine Learning and Deep Learning with Python GUI Alzheimer's is a type of dementia that causes problems with memory, thinking and behavior. Symptoms usually develop slowly and get worse over time, becoming severe enough to interfere with daily tasks. Alzheimer's is not a normal part of aging. The greatest known risk factor is increasing age, and the majority of people with Alzheimer's are 65 and older. But Alzheimer's is not just a disease of old age. Approximately 200,000 Americans under the age of 65 have younger-onset Alzheimer’s disease (also known as early-onset Alzheimer’s). The dataset consists of a longitudinal MRI data of 374 subjects aged 60 to 96. Each subject was scanned at least once. Everyone is right-handed. 206 of the subjects were grouped as 'Nondemented' throughout the study. 107 of the subjects were grouped as 'Demented' at the time of their initial visits and remained so throughout the study. 14 subjects were grouped as 'Nondemented' at the time of their initial visit and were subsequently characterized as 'Demented' at a later visit. These fall under the 'Converted' category. Following are some important features in the dataset: EDUC:Years of Education; SES: Socioeconomic Status; MMSE: Mini Mental State Examination; CDR: Clinical Dementia Rating; eTIV: Estimated Total Intracranial Volume; nWBV: Normalize Whole Brain Volume; and ASF: Atlas Scaling Factor. The models used in this project are K-Nearest Neighbor, Random Forest, Naive Bayes, Logistic Regression, Decision Tree, Support Vector Machine, Adaboost, LGBM classifier, Gradient Boosting, XGB classifier, MLP classifier, and CNN 1D. Finally, you will develop a GUI using PyQt5 to plot boundary decision, ROC, distribution of features, feature importance, cross validation score, and predicted values versus true values, confusion matrix, learning curve, performance of the model, scalability of the model, training loss, and training accuracy. WORKSHOP 6: Parkinson Classification and Prediction Using Machine Learning and Deep Learning with Python GUI The dataset was created by Max Little of the University of Oxford, in collaboration with the National Centre for Voice and Speech, Denver, Colorado, who recorded the speech signals. The original study published the feature extraction methods for general voice disorders. This dataset is composed of a range of biomedical voice measurements from 31 people, 23 with Parkinson's disease (PD). Each column in the table is a particular voice measure, and each row corresponds one of 195 voice recording from these individuals ("name" column). The main aim of the data is to discriminate healthy people from those with PD, according to "status" column which is set to 0 for healthy and 1 for PD. The data is in ASCII CSV format. The rows of the CSV file contain an instance corresponding to one voice recording. There are around six recordings per patient, the name of the patient is identified in the first column. Attribute information of this dataset are as follows: name - ASCII subject name and recording number; MDVP:Fo(Hz) - Average vocal fundamental frequency; MDVP:Fhi(Hz) - Maximum vocal fundamental frequency; MDVP:Flo(Hz) - Minimum vocal fundamental frequency; MDVP:Jitter(%); MDVP:Jitter(Abs); MDVP:RAP; MDVP:PPQ; Jitter:DDP – Several measures of variation in fundamental frequency; MDVP:Shimmer; MDVP:Shimmer(dB); Shimmer:APQ3; Shimmer:APQ5; MDVP:APQ; Shimmer:DDA - Several measures of variation in amplitude; NHR; HNR - Two measures of ratio of noise to tonal components in the voice; status - Health status of the subject (one) - Parkinson's, (zero) – healthy; RPDE,D2 - Two nonlinear dynamical complexity measures; DFA - Signal fractal scaling exponent; and spread1,spread2,PPE - Three nonlinear measures of fundamental frequency variation. The models used in this project are K-Nearest Neighbor, Random Forest, Naive Bayes, Logistic Regression, Decision Tree, Support Vector Machine, Adaboost, LGBM classifier, Gradient Boosting, XGB classifier, MLP classifier, and CNN 1D. Finally, you will develop a GUI using PyQt5 to plot boundary decision, ROC, distribution of features, feature importance, cross validation score, and predicted values versus true values, confusion matrix, learning curve, performance of the model, scalability of the model, training loss, and training accuracy. WORKSHOP 7: Liver Disease Classification and Prediction Using Machine Learning and Deep Learning with Python GUI Patients with Liver disease have been continuously increasing because of excessive consumption of alcohol, inhale of harmful gases, intake of contaminated food, pickles and drugs. This dataset was used to evaluate prediction algorithms in an effort to reduce burden on doctors. This dataset contains 416 liver patient records and 167 non liver patient records collected from North East of Andhra Pradesh, India. The "Dataset" column is a class label used to divide groups into liver patient (liver disease) or not (no disease). This data set contains 441 male patient records and 142 female patient records. Any patient whose age exceeded 89 is listed as being of age "90". Columns in the dataset: Age of the patient; Gender of the patient; Total Bilirubin; Direct Bilirubin; Alkaline Phosphotase; Alamine Aminotransferase; Aspartate Aminotransferase; Total Protiens; Albumin; Albumin and Globulin Ratio; and Dataset: field used to split the data into two sets (patient with liver disease, or no disease). The models used in this project are K-Nearest Neighbor, Random Forest, Naive Bayes, Logistic Regression, Decision Tree, Support Vector Machine, Adaboost, LGBM classifier, Gradient Boosting, XGB classifier, MLP classifier, and CNN 1D. Finally, you will develop a GUI using PyQt5 to plot boundary decision, ROC, distribution of features, feature importance, cross validation score, and predicted values versus true values, confusion matrix, learning curve, performance of the model, scalability of the model, training loss, and training accuracy.

Download or read book Practical Data Science Programming for Medical Datasets Analysis and Prediction with Python GUI written by Vivian Siahaan and published by BALIGE PUBLISHING. This book was released on 2023-06-23 with total page 402 pages. Available in PDF, EPUB and Kindle. Book excerpt: In this book, you will implement two data science projects using Scikit-Learn, Scipy, and other libraries with Python GUI. In chapter 1, you will learn how to use Scikit-Learn, SVM, NumPy, Pandas, and other libraries to perform how to predict early stage diabetes using Early Stage Diabetes Risk Prediction Dataset (https://viviansiahaan.blogspot.com/2023/06/practical-data-science-programming-for.html). This dataset contains the sign and symptom data of newly diabetic or would be diabetic patient. This has been collected using direct questionnaires from the patients of Sylhet Diabetes Hospital in Sylhet, Bangladesh and approved by a doctor. The dataset consist of total 15 features and one target variable named class. Age: Age in years ranging from (20years to 65 years); Gender: Male / Female; Polyuria: Yes / No; Polydipsia: Yes/ No; Sudden weight loss: Yes/ No; Weakness: Yes/ No; Polyphagia: Yes/ No; Genital Thrush: Yes/ No; Visual blurring: Yes/ No; Itching: Yes/ No; Irritability: Yes/No; Delayed healing: Yes/ No; Partial Paresis: Yes/ No; Muscle stiffness: yes/ No; Alopecia: Yes/ No; Obesity: Yes/ No; This dataset contains the sign and symptpom data of newly diabetic or would be diabetic patient. This has been collected using direct questionnaires from the patients of Sylhet Diabetes Hospital in Sylhet, Bangladesh and approved by a doctor. You will develop a GUI using PyQt5 to plot distribution of features, feature importance, cross validation score, and prediced values versus true values. The machine learning models used in this project are Adaboost, Random Forest, Gradient Boosting, Logistic Regression, and Support Vector Machine. In chapter 2, you will learn how to use Scikit-Learn, NumPy, Pandas, and other libraries to perform how to analyze and predict breast cancer using Breast Cancer Prediction Dataset (https://viviansiahaan.blogspot.com/2023/06/practical-data-science-programming-for.html). Worldwide, breast cancer is the most common type of cancer in women and the second highest in terms of mortality rates.Diagnosis of breast cancer is performed when an abnormal lump is found (from self-examination or x-ray) or a tiny speck of calcium is seen (on an x-ray). After a suspicious lump is found, the doctor will conduct a diagnosis to determine whether it is cancerous and, if so, whether it has spread to other parts of the body. This breast cancer dataset was obtained from the University of Wisconsin Hospitals, Madison from Dr. William H. Wolberg. You will develop a GUI using PyQt5 to plot distribution of features, pairwise relationship, test scores, prediced values versus true values, confusion matrix, and decision boundary. The machine learning models used in this project are K-Nearest Neighbor, Random Forest, Naive Bayes, Logistic Regression, Decision Tree, and Support Vector Machine.

Download or read book DATA SCIENCE WORKSHOP Alzheimer s Disease Classification and Prediction Using Machine Learning and Deep Learning with Python GUI written by Vivian Siahaan and published by BALIGE PUBLISHING. This book was released on 2023-08-21 with total page 356 pages. Available in PDF, EPUB and Kindle. Book excerpt: In the "Data Science Workshop: Alzheimer's Disease Classification and Prediction Using Machine Learning and Deep Learning with Python GUI," the project aimed to address the critical task of Alzheimer's disease prediction. The journey began with a comprehensive data exploration phase, involving the analysis of a dataset containing various features related to brain scans and demographics of patients. This initial step was crucial in understanding the data's characteristics, identifying missing values, and gaining insights into potential patterns that could aid in diagnosis. Upon understanding the dataset, the categorical features' distributions were meticulously examined. The project expertly employed pie charts, bar plots, and stacked bar plots to visualize the distribution of categorical variables like "Group," "M/F," "MMSE," "CDR," and "age_group." These visualizations facilitated a clear understanding of the demographic and clinical characteristics of the patients, highlighting key factors contributing to Alzheimer's disease. The analysis revealed significant patterns, such as the prevalence of Alzheimer's in different age groups, gender-based distribution, and cognitive performance variations. Moving ahead, the project ventured into the realm of predictive modeling. Employing machine learning techniques, the team embarked on a journey to develop models capable of predicting Alzheimer's disease with high accuracy. The focus was on employing various machine learning algorithms, including K-Nearest Neighbors (KNN), Decision Trees, Random Forests, Gradient Boosting, Light Gradient Boosting, Multi-Layer Perceptron, and Extreme Gradient Boosting. Grid search was applied to tune hyperparameters, optimizing the models' performance. The evaluation process was meticulous, utilizing a range of metrics such as accuracy, precision, recall, F1-score, and confusion matrices. This intricate analysis ensured a comprehensive assessment of each model's ability to predict Alzheimer's cases accurately. The project further delved into deep learning methodologies to enhance predictive capabilities. An arsenal of deep learning architectures, including Artificial Neural Networks (ANN), Long Short-Term Memory (LSTM) networks, Feedforward Neural Networks (FNN), and Recurrent Neural Networks (RNN), were employed. These models leveraged the intricate relationships present in the data to make refined predictions. The evaluation extended to ROC curves and AUC scores, providing insights into the models' ability to differentiate between true positive and false positive rates. The project also showcased an innovative Python GUI built using PyQt. This graphical interface provided a user-friendly platform to input data and visualize the predictions. The GUI's interactive nature allowed users to explore model outcomes and predictions while seamlessly navigating through different input options. In conclusion, the "Data Science Workshop: Alzheimer's Disease Classification and Prediction Using Machine Learning and Deep Learning with Python GUI" was a comprehensive endeavor that involved meticulous data exploration, distribution analysis of categorical features, and extensive model development and evaluation. It skillfully navigated through machine learning and deep learning techniques, deploying a variety of algorithms to predict Alzheimer's disease. The focus on diverse metrics ensured a holistic assessment of the models' performance, while the innovative GUI offered an intuitive platform to engage with predictions interactively. This project stands as a testament to the power of data science in tackling complex healthcare challenges.

Download or read book DATA SCIENCE WORKSHOP Lung Cancer Classification and Prediction Using Machine Learning and Deep Learning with Python GUI written by Vivian Siahaan and published by BALIGE PUBLISHING. This book was released on 2023-08-12 with total page 294 pages. Available in PDF, EPUB and Kindle. Book excerpt: This Data Science Workshop presents a comprehensive journey through lung cancer analysis. Beginning with data exploration, the dataset is thoroughly examined to uncover insights into its structure and contents. The focus then shifts to categorizing features and understanding their distribution patterns, revealing key trends and relationships that could impact the predictive models. To predict lung cancer using machine learning models, an extensive grid search is conducted, fine-tuning model hyperparameters for optimal performance. The iterative process involves training various models, such as K-Nearest Neighbors, Decision Trees, Random Forests, Gradient Boosting, Naive Bayes, Extreme Gradient Boosting, Light Gradient Boosting, and Multi-Layer Perceptron, and evaluating their outcomes to select the best-performing approach. Utilizing GridSearchCV aids in systematically optimizing parameters to enhance predictive accuracy. Deep Learning is harnessed through Artificial Neural Networks (ANN), which involve building multi-layered models capable of learning intricate patterns from data. The ANN architecture, comprising input, hidden, and output layers, is designed to capture the complex relationships within the dataset. Metrics like accuracy, precision, recall, and F1-score are employed to comprehensively evaluate model performance. These metrics provide a holistic view of the model's ability to classify lung cancer cases accurately and minimize false positives or negatives. The Graphical User Interface (GUI) aspect of the project is developed using PyQt, enabling user-friendly interactions with the predictive models. The GUI design includes features such as radio buttons for selecting preprocessing options (Raw, Normalization, or Standardization), a combobox for choosing the ANN model type (e.g., CNN 1D), and buttons to initiate training and prediction. The PyQt interface enhances usability by allowing users to visualize predictions, classification reports, confusion matrices, and loss-accuracy plots. The GUI's functionality expands to encompass the entire workflow. It enables data preprocessing by loading and splitting the dataset into training and testing subsets. Users can then select machine learning or deep learning models for training. The trained models are saved for future use to avoid retraining. The interface also facilitates model evaluation, showcasing accuracy scores, classification reports detailing precision and recall, and visualizations depicting loss and accuracy trends over epochs. The project's educational value lies in its comprehensive approach, taking participants through every step of a data science pipeline. Attendees gain insights into data preprocessing, model selection, hyperparameter tuning, and performance evaluation. The integration of machine learning and deep learning methodologies, along with GUI development, provides a well-rounded understanding of creating predictive tools for real-world applications. Participants leave the workshop empowered with the skills to explore and analyze medical datasets, implement machine learning and deep learning models, and build user-friendly interfaces for effective interaction. The workshop bridges the gap between theoretical knowledge and practical implementation, fostering a deeper understanding of data-driven decision-making in the realm of medical diagnostics and classification.

Download or read book THE APPLIED DATA SCIENCE WORKSHOP Prostate Cancer Classification and Recognition Using Machine Learning and Deep Learning with Python GUI written by Vivian Siahaan and published by BALIGE PUBLISHING. This book was released on 2023-07-19 with total page 357 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Applied Data Science Workshop on Prostate Cancer Classification and Recognition using Machine Learning and Deep Learning with Python GUI involved several steps and components. The project aimed to analyze prostate cancer data, explore the features, develop machine learning models, and create a graphical user interface (GUI) using PyQt5. The project began with data exploration, where the prostate cancer dataset was examined to understand its structure and content. Various statistical techniques were employed to gain insights into the data, such as checking the dimensions, identifying missing values, and examining the distribution of the target variable. The next step involved exploring the distribution of features in the dataset. Visualizations were created to analyze the characteristics and relationships between different features. Histograms, scatter plots, and correlation matrices were used to uncover patterns and identify potential variables that may contribute to the classification of prostate cancer. Machine learning models were then developed to classify prostate cancer based on the available features. Several algorithms, including Logistic Regression, K-Nearest Neighbors, Decision Trees, Random Forests, Gradient Boosting, Naive Bayes, Adaboost, Extreme Gradient Boosting, Light Gradient Boosting, and Multi-Layer Perceptron (MLP), were implemented. Each model was trained and evaluated using appropriate techniques such as cross-validation and grid search for hyperparameter tuning. The performance of each machine learning model was assessed using evaluation metrics such as accuracy, precision, recall, and F1-score. These metrics provided insights into the effectiveness of the models in accurately classifying prostate cancer cases. Model comparison and selection were based on their performance and the specific requirements of the project. In addition to the machine learning models, a deep learning model based on an Artificial Neural Network (ANN) was implemented. The ANN architecture consisted of multiple layers, including input, hidden, and output layers. The ANN model was trained using the dataset, and its performance was evaluated using accuracy and loss metrics. To provide a user-friendly interface for the project, a GUI was designed using PyQt, a Python library for creating desktop applications. The GUI allowed users to interact with the machine learning models and perform tasks such as selecting the prediction method, loading data, training models, and displaying results. The GUI included various graphical components such as buttons, combo boxes, input fields, and plot windows. These components were designed to facilitate data loading, model training, and result visualization. Users could choose the prediction method, view accuracy scores, classification reports, and confusion matrices, and explore the predicted values compared to the actual values. The GUI also incorporated interactive features such as real-time updates of prediction results based on user selections and dynamic plot generation for visualizing model performance. Users could switch between different prediction methods, observe changes in accuracy, and examine the history of training loss and accuracy through plotted graphs. Data preprocessing techniques, such as standardization and normalization, were applied to ensure the consistency and reliability of the machine learning and deep learning models. The dataset was divided into training and testing sets to assess model performance on unseen data and detect overfitting or underfitting. Model persistence was implemented to save the trained machine learning and deep learning models to disk, allowing for easy retrieval and future use. The saved models could be loaded and utilized within the GUI for prediction tasks without the need for retraining. Overall, the Applied Data Science Workshop on Prostate Cancer Classification and Recognition provided a comprehensive framework for analyzing prostate cancer data, developing machine learning and deep learning models, and creating an interactive GUI. The project aimed to assist in the accurate classification and recognition of prostate cancer cases, facilitating informed decision-making and potentially contributing to improved patient outcomes.

Download or read book Data Science For Programmer A Project Based Approach With Python GUI written by Vivian Siahaan and published by BALIGE PUBLISHING. This book was released on 2021-08-19 with total page 520 pages. Available in PDF, EPUB and Kindle. Book excerpt: Book 1: Practical Data Science Programming for Medical Datasets Analysis and Prediction with Python GUI In this book, you will implement two data science projects using Scikit-Learn, Scipy, and other libraries with Python GUI. In Project 1, you will learn how to use Scikit-Learn, NumPy, Pandas, Seaborn, and other libraries to perform how to predict early stage diabetes using Early Stage Diabetes Risk Prediction Dataset provided by Kaggle. This dataset contains the sign and symptpom data of newly diabetic or would be diabetic patient. This has been collected using direct questionnaires from the patients of Sylhet Diabetes Hospital in Sylhet, Bangladesh and approved by a doctor. You will develop a GUI using PyQt5 to plot distribution of features, feature importance, cross validation score, and prediced values versus true values. The machine learning models used in this project are Adaboost, Random Forest, Gradient Boosting, Logistic Regression, and Support Vector Machine. In Project 2, you will learn how to use Scikit-Learn, NumPy, Pandas, and other libraries to perform how to analyze and predict breast cancer using Breast Cancer Prediction Dataset provided by Kaggle. Worldwide, breast cancer is the most common type of cancer in women and the second highest in terms of mortality rates.Diagnosis of breast cancer is performed when an abnormal lump is found (from self-examination or x-ray) or a tiny speck of calcium is seen (on an x-ray). After a suspicious lump is found, the doctor will conduct a diagnosis to determine whether it is cancerous and, if so, whether it has spread to other parts of the body. This breast cancer dataset was obtained from the University of Wisconsin Hospitals, Madison from Dr. William H. Wolberg. You will develop a GUI using PyQt5 to plot distribution of features, pairwise relationship, test scores, prediced values versus true values, confusion matrix, and decision boundary. The machine learning models used in this project are K-Nearest Neighbor, Random Forest, Naive Bayes, Logistic Regression, Decision Tree, and Support Vector Machine. Book 2: Step by Step Tutorials For Data Science With Python GUI: Traffic And Heart Attack Analysis And Prediction In this book, you will implement two data science projects using Scikit-Learn, Scipy, and other libraries with Python GUI. In Chapter 1, you will learn how to use Scikit-Learn, Scipy, and other libraries to perform how to predict traffic (number of vehicles) in four different junctions using Traffic Prediction Dataset provided by Kaggle. This dataset contains 48.1k (48120) observations of the number of vehicles each hour in four different junctions: 1) DateTime; 2) Juction; 3) Vehicles; and 4) ID. In Chapter 2, you will learn how to use Scikit-Learn, NumPy, Pandas, and other libraries to perform how to analyze and predict heart attack using Heart Attack Analysis & Prediction Dataset provided by Kaggle. Book 3: BRAIN TUMOR: Analysis, Classification, and Detection Using Machine Learning and Deep Learning with Python GUI In this project, you will learn how to use Scikit-Learn, TensorFlow, Keras, NumPy, Pandas, Seaborn, and other libraries to implement brain tumor classification and detection with machine learning using Brain Tumor dataset provided by Kaggle. This dataset contains five first order features: Mean (the contribution of individual pixel intensity for the entire image), Variance (used to find how each pixel varies from the neighboring pixel 0, Standard Deviation (the deviation of measured Values or the data from its mean), Skewness (measures of symmetry), and Kurtosis (describes the peak of e.g. a frequency distribution). It also contains eight second order features: Contrast, Energy, ASM (Angular second moment), Entropy, Homogeneity, Dissimilarity, Correlation, and Coarseness. The machine learning models used in this project are K-Nearest Neighbor, Random Forest, Naive Bayes, Logistic Regression, Decision Tree, and Support Vector Machine. The deep learning models used in this project are MobileNet and ResNet50. In this project, you will develop a GUI using PyQt5 to plot boundary decision, ROC, distribution of features, feature importance, cross validation score, and predicted values versus true values, confusion matrix, training loss, and training accuracy.

Download or read book THE APPLIED DATA SCIENCE WORKSHOP Urinary biomarkers Based Pancreatic Cancer Classification and Prediction Using Machine Learning with Python GUI written by Vivian Siahaan and published by BALIGE PUBLISHING. This book was released on 2023-07-23 with total page 327 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Applied Data Science Workshop on "Urinary Biomarkers-Based Pancreatic Cancer Classification and Prediction Using Machine Learning with Python GUI" embarks on a comprehensive journey, commencing with an in-depth exploration of the dataset. During this initial phase, the structure and size of the dataset are thoroughly examined, and the various features it contains are meticulously studied. The principal objective is to understand the relationship between these features and the target variable, which, in this case, is the diagnosis of pancreatic cancer. The distribution of each feature is analyzed, and potential patterns, trends, or outliers that could significantly impact the model's performance are identified. To ensure the data is in optimal condition for model training, preprocessing steps are undertaken. This involves handling missing values through imputation techniques, such as mean, median, or interpolation, depending on the nature of the data. Additionally, feature engineering is performed to derive new features or transform existing ones, with the aim of enhancing the model's predictive power. In preparation for model building, the dataset is split into training and testing sets. This division is crucial to assess the models' generalization performance on unseen data accurately. To maintain a balanced representation of classes in both sets, stratified sampling is employed, mitigating potential biases in the model evaluation process. The workshop explores an array of machine learning classifiers suitable for pancreatic cancer classification, such as Logistic Regression, K-Nearest Neighbors, Decision Trees, Random Forests, Gradient Boosting, Naive Bayes, Adaboost, Extreme Gradient Boosting, Light Gradient Boosting, Naïve Bayes, and Multi-Layer Perceptron (MLP). For each classifier, three different preprocessing techniques are applied to investigate their impact on model performance: raw (unprocessed data), normalization (scaling data to a similar range), and standardization (scaling data to have zero mean and unit variance). To optimize the classifiers' hyperparameters and boost their predictive capabilities, GridSearchCV, a technique for hyperparameter tuning, is employed. GridSearchCV conducts an exhaustive search over a specified hyperparameter grid, evaluating different combinations to identify the optimal settings for each model and preprocessing technique. During the model evaluation phase, multiple performance metrics are utilized to gauge the efficacy of the classifiers. Commonly used metrics include accuracy, recall, precision, and F1-score. By comprehensively assessing these metrics, the strengths and weaknesses of each model are revealed, enabling a deeper understanding of their performance across different classes of pancreatic cancer. Classification reports are generated to present a detailed breakdown of the models' performance, including precision, recall, F1-score, and support for each class. These reports serve as valuable tools for interpreting model outputs and identifying areas for potential improvement. The workshop highlights the significance of graphical user interfaces (GUIs) in facilitating user interactions with machine learning models. By integrating PyQt, a powerful GUI development library for Python, participants create a user-friendly interface that enables users to interact with the models effortlessly. The GUI provides options to select different preprocessing techniques, visualize model outputs such as confusion matrices and decision boundaries, and gain insights into the models' classification capabilities. One of the primary advantages of the graphical user interface is its ability to offer users a seamless and intuitive experience in predicting and classifying pancreatic cancer based on urinary biomarkers. The GUI empowers users to make informed decisions by allowing them to compare the performance of different classifiers under various preprocessing techniques. Throughout the workshop, a strong emphasis is placed on the significance of proper data preprocessing, hyperparameter tuning, and robust model evaluation. These crucial steps contribute to building accurate and reliable machine learning models for pancreatic cancer prediction. By the culmination of the workshop, participants have gained valuable hands-on experience in data exploration, machine learning model building, hyperparameter tuning, and GUI development, all geared towards addressing the specific challenge of pancreatic cancer classification and prediction. In conclusion, the Applied Data Science Workshop on "Urinary Biomarkers-Based Pancreatic Cancer Classification and Prediction Using Machine Learning with Python GUI" embarks on a comprehensive and transformative journey, bringing together data exploration, preprocessing, machine learning model selection, hyperparameter tuning, model evaluation, and GUI development. The project's focus on pancreatic cancer prediction using urinary biomarkers aligns with the pressing need for early detection and treatment of this deadly disease. As participants delve into the intricacies of machine learning and medical research, they contribute to the broader scientific community's ongoing efforts to combat cancer and improve patient outcomes. Through the integration of data science methodologies and powerful visualization tools, the workshop exemplifies the potential of machine learning in revolutionizing medical diagnostics and healthcare practices.

Download or read book Data Science and Deep Learning Workshop For Scientists and Engineers written by Vivian Siahaan and published by BALIGE PUBLISHING. This book was released on 2021-11-04 with total page 1977 pages. Available in PDF, EPUB and Kindle. Book excerpt: WORKSHOP 1: In this workshop, you will learn how to use TensorFlow, Keras, Scikit-Learn, OpenCV, Pandas, NumPy and other libraries to implement deep learning on recognizing traffic signs using GTSRB dataset, detecting brain tumor using Brain Image MRI dataset, classifying gender, and recognizing facial expression using FER2013 dataset In Chapter 1, you will learn to create GUI applications to display line graph using PyQt. You will also learn how to display image and its histogram. In Chapter 2, you will learn how to use TensorFlow, Keras, Scikit-Learn, Pandas, NumPy and other libraries to perform prediction on handwritten digits using MNIST dataset with PyQt. You will build a GUI application for this purpose. In Chapter 3, you will learn how to perform recognizing traffic signs using GTSRB dataset from Kaggle. There are several different types of traffic signs like speed limits, no entry, traffic signals, turn left or right, children crossing, no passing of heavy vehicles, etc. Traffic signs classification is the process of identifying which class a traffic sign belongs to. In this Python project, you will build a deep neural network model that can classify traffic signs in image into different categories. With this model, you will be able to read and understand traffic signs which are a very important task for all autonomous vehicles. You will build a GUI application for this purpose. In Chapter 4, you will learn how to perform detecting brain tumor using Brain Image MRI dataset provided by Kaggle (https://www.kaggle.com/navoneel/brain-mri-images-for-brain-tumor-detection) using CNN model. You will build a GUI application for this purpose. In Chapter 5, you will learn how to perform classifying gender using dataset provided by Kaggle (https://www.kaggle.com/cashutosh/gender-classification-dataset) using MobileNetV2 and CNN models. You will build a GUI application for this purpose. In Chapter 6, you will learn how to perform recognizing facial expression using FER2013 dataset provided by Kaggle (https://www.kaggle.com/nicolejyt/facialexpressionrecognition) using CNN model. You will also build a GUI application for this purpose. WORKSHOP 2: In this workshop, you will learn how to use TensorFlow, Keras, Scikit-Learn, OpenCV, Pandas, NumPy and other libraries to implement deep learning on classifying fruits, classifying cats/dogs, detecting furnitures, and classifying fashion. In Chapter 1, you will learn to create GUI applications to display line graph using PyQt. You will also learn how to display image and its histogram. Then, you will learn how to use OpenCV, NumPy, and other libraries to perform feature extraction with Python GUI (PyQt). The feature detection techniques used in this chapter are Harris Corner Detection, Shi-Tomasi Corner Detector, and Scale-Invariant Feature Transform (SIFT). In Chapter 2, you will learn how to use TensorFlow, Keras, Scikit-Learn, OpenCV, Pandas, NumPy and other libraries to perform classifying fruits using Fruits 360 dataset provided by Kaggle (https://www.kaggle.com/moltean/fruits/code) using Transfer Learning and CNN models. You will build a GUI application for this purpose. In Chapter 3, you will learn how to use TensorFlow, Keras, Scikit-Learn, OpenCV, Pandas, NumPy and other libraries to perform classifying cats/dogs using dataset provided by Kaggle (https://www.kaggle.com/chetankv/dogs-cats-images) using Using CNN with Data Generator. You will build a GUI application for this purpose. In Chapter 4, you will learn how to use TensorFlow, Keras, Scikit-Learn, OpenCV, Pandas, NumPy and other libraries to perform detecting furnitures using Furniture Detector dataset provided by Kaggle (https://www.kaggle.com/akkithetechie/furniture-detector) using VGG16 model. You will build a GUI application for this purpose. In Chapter 5, you will learn how to use TensorFlow, Keras, Scikit-Learn, OpenCV, Pandas, NumPy and other libraries to perform classifying fashion using Fashion MNIST dataset provided by Kaggle (https://www.kaggle.com/zalando-research/fashionmnist/code) using CNN model. You will build a GUI application for this purpose. WORKSHOP 3: In this workshop, you will implement deep learning on detecting vehicle license plates, recognizing sign language, and detecting surface crack using TensorFlow, Keras, Scikit-Learn, OpenCV, Pandas, NumPy and other libraries. In Chapter 1, you will learn how to use TensorFlow, Keras, Scikit-Learn, OpenCV, Pandas, NumPy and other libraries to perform detecting vehicle license plates using Car License Plate Detection dataset provided by Kaggle (https://www.kaggle.com/andrewmvd/car-plate-detection/download). In Chapter 2, you will learn how to use TensorFlow, Keras, Scikit-Learn, OpenCV, Pandas, NumPy and other libraries to perform sign language recognition using Sign Language Digits Dataset provided by Kaggle (https://www.kaggle.com/ardamavi/sign-language-digits-dataset/download). In Chapter 3, you will learn how to use TensorFlow, Keras, Scikit-Learn, OpenCV, Pandas, NumPy and other libraries to perform detecting surface crack using Surface Crack Detection provided by Kaggle (https://www.kaggle.com/arunrk7/surface-crack-detection/download). WORKSHOP 4: In this workshop, implement deep learning-based image classification on detecting face mask, classifying weather, and recognizing flower using TensorFlow, Keras, Scikit-Learn, OpenCV, Pandas, NumPy and other libraries. In Chapter 1, you will learn how to use TensorFlow, Keras, Scikit-Learn, OpenCV, Pandas, NumPy and other libraries to perform detecting face mask using Face Mask Detection Dataset provided by Kaggle (https://www.kaggle.com/omkargurav/face-mask-dataset/download). In Chapter 2, you will learn how to use TensorFlow, Keras, Scikit-Learn, OpenCV, Pandas, NumPy and other libraries to perform how to classify weather using Multi-class Weather Dataset provided by Kaggle (https://www.kaggle.com/pratik2901/multiclass-weather-dataset/download). WORKSHOP 5: In this workshop, implement deep learning-based image classification on classifying monkey species, recognizing rock, paper, and scissor, and classify airplane, car, and ship using TensorFlow, Keras, Scikit-Learn, OpenCV, Pandas, NumPy and other libraries. In Chapter 1, you will learn how to use TensorFlow, Keras, Scikit-Learn, OpenCV, Pandas, NumPy and other libraries to perform how to classify monkey species using 10 Monkey Species dataset provided by Kaggle (https://www.kaggle.com/slothkong/10-monkey-species/download). In Chapter 2, you will learn how to use TensorFlow, Keras, Scikit-Learn, OpenCV, Pandas, NumPy and other libraries to perform how to recognize rock, paper, and scissor using 10 Monkey Species dataset provided by Kaggle (https://www.kaggle.com/sanikamal/rock-paper-scissors-dataset/download). WORKSHOP 6: In this worksshop, you will implement two data science projects using Scikit-Learn, Scipy, and other libraries with Python GUI. In Chapter 1, you will learn how to use Scikit-Learn, Scipy, and other libraries to perform how to predict traffic (number of vehicles) in four different junctions using Traffic Prediction Dataset provided by Kaggle (https://www.kaggle.com/fedesoriano/traffic-prediction-dataset/download). This dataset contains 48.1k (48120) observations of the number of vehicles each hour in four different junctions: 1) DateTime; 2) Juction; 3) Vehicles; and 4) ID. In Chapter 2, you will learn how to use Scikit-Learn, NumPy, Pandas, and other libraries to perform how to analyze and predict heart attack using Heart Attack Analysis & Prediction Dataset provided by Kaggle (https://www.kaggle.com/rashikrahmanpritom/heart-attack-analysis-prediction-dataset/download). WORKSHOP 7: In this workshop, you will implement two data science projects using Scikit-Learn, Scipy, and other libraries with Python GUI. In Project 1, you will learn how to use Scikit-Learn, NumPy, Pandas, Seaborn, and other libraries to perform how to predict early stage diabetes using Early Stage Diabetes Risk Prediction Dataset provided by Kaggle (https://www.kaggle.com/ishandutta/early-stage-diabetes-risk-prediction-dataset/download). This dataset contains the sign and symptpom data of newly diabetic or would be diabetic patient. This has been collected using direct questionnaires from the patients of Sylhet Diabetes Hospital in Sylhet, Bangladesh and approved by a doctor. You will develop a GUI using PyQt5 to plot distribution of features, feature importance, cross validation score, and prediced values versus true values. The machine learning models used in this project are Adaboost, Random Forest, Gradient Boosting, Logistic Regression, and Support Vector Machine. In Project 2, you will learn how to use Scikit-Learn, NumPy, Pandas, and other libraries to perform how to analyze and predict breast cancer using Breast Cancer Prediction Dataset provided by Kaggle (https://www.kaggle.com/merishnasuwal/breast-cancer-prediction-dataset/download). Worldwide, breast cancer is the most common type of cancer in women and the second highest in terms of mortality rates.Diagnosis of breast cancer is performed when an abnormal lump is found (from self-examination or x-ray) or a tiny speck of calcium is seen (on an x-ray). After a suspicious lump is found, the doctor will conduct a diagnosis to determine whether it is cancerous and, if so, whether it has spread to other parts of the body. This breast cancer dataset was obtained from the University of Wisconsin Hospitals, Madison from Dr. William H. Wolberg. You will develop a GUI using PyQt5 to plot distribution of features, pairwise relationship, test scores, prediced values versus true values, confusion matrix, and decision boundary. The machine learning models used in this project are K-Nearest Neighbor, Random Forest, Naive Bayes, Logistic Regression, Decision Tree, and Support Vector Machine. WORKSHOP 8: In this workshop, you will learn how to use Scikit-Learn, TensorFlow, Keras, NumPy, Pandas, Seaborn, and other libraries to implement brain tumor classification and detection with machine learning using Brain Tumor dataset provided by Kaggle. This dataset contains five first order features: Mean (the contribution of individual pixel intensity for the entire image), Variance (used to find how each pixel varies from the neighboring pixel 0, Standard Deviation (the deviation of measured Values or the data from its mean), Skewness (measures of symmetry), and Kurtosis (describes the peak of e.g. a frequency distribution). It also contains eight second order features: Contrast, Energy, ASM (Angular second moment), Entropy, Homogeneity, Dissimilarity, Correlation, and Coarseness. The machine learning models used in this project are K-Nearest Neighbor, Random Forest, Naive Bayes, Logistic Regression, Decision Tree, and Support Vector Machine. The deep learning models used in this project are MobileNet and ResNet50. In this project, you will develop a GUI using PyQt5 to plot boundary decision, ROC, distribution of features, feature importance, cross validation score, and predicted values versus true values, confusion matrix, training loss, and training accuracy. WORKSHOP 9: In this workshop, you will learn how to use Scikit-Learn, Keras, TensorFlow, NumPy, Pandas, Seaborn, and other libraries to perform COVID-19 Epitope Prediction using COVID-19/SARS B-cell Epitope Prediction dataset provided in Kaggle. All of three datasets consists of information of protein and peptide: parent_protein_id : parent protein ID; protein_seq : parent protein sequence; start_position : start position of peptide; end_position : end position of peptide; peptide_seq : peptide sequence; chou_fasman : peptide feature; emini : peptide feature, relative surface accessibility; kolaskar_tongaonkar : peptide feature, antigenicity; parker : peptide feature, hydrophobicity; isoelectric_point : protein feature; aromacity: protein feature; hydrophobicity : protein feature; stability : protein feature; and target : antibody valence (target value). The machine learning models used in this project are K-Nearest Neighbor, Random Forest, Naive Bayes, Logistic Regression, Decision Tree, Support Vector Machine, Adaboost, Gradient Boosting, XGB classifier, and MLP classifier. Then, you will learn how to use sequential CNN and VGG16 models to detect and predict Covid-19 X-RAY using COVID-19 Xray Dataset (Train & Test Sets) provided in Kaggle. The folder itself consists of two subfolders: test and train. Finally, you will develop a GUI using PyQt5 to plot boundary decision, ROC, distribution of features, feature importance, cross validation score, and predicted values versus true values, confusion matrix, training loss, and training accuracy. WORKSHOP 10: In this workshop, you will learn how to use Scikit-Learn, Keras, TensorFlow, NumPy, Pandas, Seaborn, and other libraries to perform analyzing and predicting stroke using dataset provided in Kaggle. The dataset consists of attribute information: id: unique identifier; gender: "Male", "Female" or "Other"; age: age of the patient; hypertension: 0 if the patient doesn't have hypertension, 1 if the patient has hypertension; heart_disease: 0 if the patient doesn't have any heart diseases, 1 if the patient has a heart disease; ever_married: "No" or "Yes"; work_type: "children", "Govt_jov", "Never_worked", "Private" or "Self-employed"; Residence_type: "Rural" or "Urban"; avg_glucose_level: average glucose level in blood; bmi: body mass index; smoking_status: "formerly smoked", "never smoked", "smokes" or "Unknown"; and stroke: 1 if the patient had a stroke or 0 if not. The models used in this project are K-Nearest Neighbor, Random Forest, Naive Bayes, Logistic Regression, Decision Tree, Support Vector Machine, Adaboost, LGBM classifier, Gradient Boosting, XGB classifier, MLP classifier, and CNN 1D. Finally, you will develop a GUI using PyQt5 to plot boundary decision, ROC, distribution of features, feature importance, cross validation score, and predicted values versus true values, confusion matrix, learning curve, performace of the model, scalability of the model, training loss, and training accuracy. WORKSHOP 11: In this workshop, you will learn how to use Scikit-Learn, Keras, TensorFlow, NumPy, Pandas, Seaborn, and other libraries to perform classifying and predicting Hepatitis C using dataset provided by UCI Machine Learning Repository. All attributes in dataset except Category and Sex are numerical. Attributes 1 to 4 refer to the data of the patient: X (Patient ID/No.), Category (diagnosis) (values: '0=Blood Donor', '0s=suspect Blood Donor', '1=Hepatitis', '2=Fibrosis', '3=Cirrhosis'), Age (in years), Sex (f,m), ALB, ALP, ALT, AST, BIL, CHE, CHOL, CREA, GGT, and PROT. The target attribute for classification is Category (2): blood donors vs. Hepatitis C patients (including its progress ('just' Hepatitis C, Fibrosis, Cirrhosis). The models used in this project are K-Nearest Neighbor, Random Forest, Naive Bayes, Logistic Regression, Decision Tree, Support Vector Machine, Adaboost, LGBM classifier, Gradient Boosting, XGB classifier, MLP classifier, and ANN 1D. Finally, you will develop a GUI using PyQt5 to plot boundary decision, ROC, distribution of features, feature importance, cross validation score, and predicted values versus true values, confusion matrix, learning curve, performace of the model, scalability of the model, training loss, and training accuracy.

Download or read book DATA SCIENCE WORKSHOP Liver Disease Classification and Prediction Using Machine Learning and Deep Learning with Python GUI written by Vivian Siahaan and published by BALIGE PUBLISHING. This book was released on 2023-08-09 with total page 353 pages. Available in PDF, EPUB and Kindle. Book excerpt: In this project, Data Science Workshop focused on Liver Disease Classification and Prediction, we embarked on a comprehensive journey through various stages of data analysis, model development, and performance evaluation. The workshop aimed to utilize Python and its associated libraries to create a Graphical User Interface (GUI) that facilitates the classification and prediction of liver disease cases. Our exploration began with a thorough examination of the dataset. This entailed importing necessary libraries such as NumPy, Pandas, and Matplotlib for data manipulation, visualization, and preprocessing. The dataset, representing liver-related attributes, was read and its dimensions were checked to ensure data integrity. To gain a preliminary understanding, the dataset's initial rows and column information were displayed. We identified key features such as 'Age', 'Gender', and various biochemical attributes relevant to liver health. The dataset's structure, including data types and non-null counts, was inspected to identify any potential data quality issues. We detected that the 'Albumin_and_Globulin_Ratio' feature had a few missing values, which were subsequently filled with the median value. Our exploration extended to visualizing categorical distributions. Pie charts provided insights into the proportions of healthy and unhealthy liver cases among different gender categories. Stacked bar plots further delved into the connections between 'Total_Bilirubin' categories and the prevalence of liver disease, fostering a deeper understanding of these relationships. Transitioning to predictive modeling, we embarked on constructing machine learning models. Our arsenal included a range of algorithms such as Logistic Regression, Support Vector Machines, K-Nearest Neighbors, Decision Trees, Random Forests, Gradient Boosting, Extreme Gradient Boosting, Light Gradient Boosting. The data was split into training and testing sets, and each model underwent rigorous evaluation using metrics like accuracy, precision, recall, F1-score, and ROC-AUC. Hyperparameter tuning played a pivotal role in model enhancement. We leveraged grid search and cross-validation techniques to identify the best combination of hyperparameters, optimizing model performance. Our focus shifted towards assessing the significance of each feature, using techniques such as feature importance from tree-based models. The workshop didn't halt at machine learning; it delved into deep learning as well. We implemented an Artificial Neural Network (ANN) using the Keras library. This powerful model demonstrated its ability to capture complex relationships within the data. With distinct layers, activation functions, and dropout layers to prevent overfitting, the ANN achieved impressive results in liver disease prediction. Our journey culminated with a comprehensive analysis of model performance. The metrics chosen for evaluation included accuracy, precision, recall, F1-score, and confusion matrix visualizations. These metrics provided a comprehensive view of the model's capability to correctly classify both healthy and unhealthy liver cases. In summary, the Data Science Workshop on Liver Disease Classification and Prediction was a holistic exploration into data preprocessing, feature categorization, machine learning, and deep learning techniques. The culmination of these efforts resulted in the creation of a Python GUI that empowers users to input patient attributes and receive predictions regarding liver health. Through this workshop, participants gained a well-rounded understanding of data science techniques and their application in the field of healthcare.

Download or read book Practical Machine Learning for Data Analysis Using Python written by Abdulhamit Subasi and published by Academic Press. This book was released on 2020-06-05 with total page 534 pages. Available in PDF, EPUB and Kindle. Book excerpt: Practical Machine Learning for Data Analysis Using Python is a problem solver’s guide for creating real-world intelligent systems. It provides a comprehensive approach with concepts, practices, hands-on examples, and sample code. The book teaches readers the vital skills required to understand and solve different problems with machine learning. It teaches machine learning techniques necessary to become a successful practitioner, through the presentation of real-world case studies in Python machine learning ecosystems. The book also focuses on building a foundation of machine learning knowledge to solve different real-world case studies across various fields, including biomedical signal analysis, healthcare, security, economics, and finance. Moreover, it covers a wide range of machine learning models, including regression, classification, and forecasting. The goal of the book is to help a broad range of readers, including IT professionals, analysts, developers, data scientists, engineers, and graduate students, to solve their own real-world problems. Offers a comprehensive overview of the application of machine learning tools in data analysis across a wide range of subject areas Teaches readers how to apply machine learning techniques to biomedical signals, financial data, and healthcare data Explores important classification and regression algorithms as well as other machine learning techniques Explains how to use Python to handle data extraction, manipulation, and exploration techniques, as well as how to visualize data spread across multiple dimensions and extract useful features

Download or read book Machine Learning Cookbook with Python written by Rehan Guha and published by BPB Publications. This book was released on 2020-11-12 with total page 319 pages. Available in PDF, EPUB and Kindle. Book excerpt: A Cookbook that will help you implement Machine Learning algorithms and techniques by building real-world projects Ê KEY FEATURESÊ Learn how to handle an entire Machine Learning Pipeline supported with adequate mathematics. Create Predictive Models and choose the right model for various types of Datasets. Learn the art of tuning a model to improve accuracy as per Business requirements. Get familiar with concepts related to Data Analytics with Visualization, Data Science and Machine Learning. DESCRIPTION Machine Learning does not have to be intimidating at all. This book focuses on the concepts of Machine Learning and Data Analytics with mathematical explanations and programming examples. All the codes are written in Python as it is one of the most popular programming languages used for Data Science and Machine Learning. Here I have leveraged multiple libraries like NumPy, Pandas, scikit-learn, etc. to ease our task and not reinvent the wheel. There are five projects in total, each addressing a unique problem. With the recipes in this cookbook, one will learn how to solve Machine Learning problems for real-time data and perform Data Analysis and Analytics, Classification, and beyond. The datasets used are also unique and will help one to think, understand the problem and proceed towards the goal. The book is not saturated with Mathematics, but mostly all the Mathematical concepts are covered for the important topics. Every chapter typically starts with some theory and prerequisites, and then it gradually dives into the implementation of the same concept using Python, keeping a project in the background.Ê Ê WHAT WILL YOU LEARN Understand the working of the O.S.E.M.N. framework in Data Science.Ê Get familiar with the end-to-end implementation of Machine Learning Pipeline. Learn how to implement Machine Learning algorithms and concepts using Python. Learn how to build a Predictive Model for a Business case. WHO THIS BOOK IS FORÊ This cookbook is meant for anybody who is passionate enough to get into the World of Machine Learning and has a preliminary understanding of the Basics of Linear Algebra, Calculus, Probability, and Statistics. This book also serves as a reference guidebook for intermediate Machine Learning practitioners. Ê TABLE OF CONTENTS 1. Boston Crime 2. World Happiness Report 3. Iris Species 4. Credit Card Fraud Detection 5. Heart Disease UCI

Download or read book DATA SCIENCE WORKSHOP Heart Failure Analysis and Prediction Using Scikit Learn Keras and TensorFlow with Python GUI written by Vivian Siahaan and published by BALIGE PUBLISHING. This book was released on 2023-08-18 with total page 398 pages. Available in PDF, EPUB and Kindle. Book excerpt: In this "Heart Failure Analysis and Prediction" data science workshop, we embarked on a comprehensive journey through the intricacies of cardiovascular health assessment using machine learning and deep learning techniques. Our journey began with an in-depth exploration of the dataset, where we meticulously studied its characteristics, dimensions, and underlying patterns. This initial step laid the foundation for our subsequent analyses. We delved into a detailed examination of the distribution of categorized features, meticulously dissecting variables such as age, sex, serum sodium levels, diabetes status, high blood pressure, smoking habits, and anemia. This critical insight enabled us to comprehend how these features relate to each other and potentially impact the occurrence of heart failure, providing valuable insights for subsequent modeling. Subsequently, we engaged in the heart of the project: predicting heart failure. Employing machine learning models, we harnessed the power of grid search to optimize model parameters, meticulously fine-tuning algorithms to achieve the best predictive performance. Through an array of models including Logistic Regression, KNeighbors Classifier, DecisionTrees Classifier, Random Forest Classifier, Gradient Boosting Classifier, XGB Classifier, LGBM Classifier, and MLP Classifier, we harnessed metrics like accuracy, precision, recall, and F1-score to meticulously evaluate each model's efficacy. Venturing further into the realm of deep learning, we embarked on an exploration of neural networks, striving to capture intricate patterns in the data. Our arsenal included diverse architectures such as Artificial Neural Networks (ANN), Long Short-Term Memory (LSTM) networks, Self Organizing Maps (SOMs), Recurrent Neural Networks (RNN), Deep Belief Networks (DBN), and Autoencoders. These architectures enabled us to unravel complex relationships within the data, yielding nuanced insights into the dynamics of heart failure prediction. Our approach to evaluating model performance was rigorous and thorough. By scrutinizing metrics such as accuracy, recall, precision, and F1-score, we gained a comprehensive understanding of the models' strengths and limitations. These metrics enabled us to make informed decisions about model selection and refinement, ensuring that our predictions were as accurate and reliable as possible. The evaluation phase emerges as a pivotal aspect, accentuated by an array of comprehensive metrics. Performance assessment encompasses metrics such as accuracy, precision, recall, F1-score, and ROC-AUC. Cross-validation and learning curves are strategically employed to mitigate overfitting and ensure model generalization. Furthermore, visual aids such as ROC curves and confusion matrices provide a lucid depiction of the models' interplay between sensitivity and specificity. Complementing our advanced analytical endeavors, we also embarked on the creation of a Python GUI using PyQt. This intuitive graphical interface provided an accessible platform for users to interact with the developed models and gain meaningful insights into heart health. The GUI streamlined the prediction process, making it user-friendly and facilitating the application of our intricate models to real-world scenarios. In conclusion, the "Heart Failure Analysis and Prediction" data science workshop was a journey through the realms of data exploration, feature distribution analysis, and the application of cutting-edge machine learning and deep learning techniques. By meticulously evaluating model performance, harnessing the capabilities of neural networks, and culminating in the creation of a user-friendly Python GUI, we armed participants with a comprehensive toolkit to analyze and predict heart failure with precision and innovation.

Download or read book Machine Learning and Data Analytics for Predicting Managing and Monitoring Disease written by Roy, Manikant and published by IGI Global. This book was released on 2021-06-25 with total page 241 pages. Available in PDF, EPUB and Kindle. Book excerpt: Data analytics is proving to be an ally for epidemiologists as they join forces with data scientists to address the scale of crises. Analytics examined from many sources can derive insights and be used to study and fight global outbreaks. Pandemic analytics is a modern way to combat a problem as old as humanity itself: the proliferation of disease. Machine Learning and Data Analytics for Predicting, Managing, and Monitoring Disease explores different types of data and discusses how to prepare data for analysis, perform simple statistical analyses, create meaningful data visualizations, predict future trends from data, and more by applying cutting edge technology such as machine learning and data analytics in the wake of the COVID-19 pandemic. Covering a range of topics such as mental health analytics during COVID-19, data analysis and machine learning using Python, and statistical model development and deployment, it is ideal for researchers, academicians, data scientists, technologists, data analysts, diagnosticians, healthcare professionals, computer scientists, and students.

Download or read book Deep Learning for Medical Applications with Unique Data written by Deepak Gupta and published by Academic Press. This book was released on 2022-02-15 with total page 258 pages. Available in PDF, EPUB and Kindle. Book excerpt: Deep Learning for Medical Applications with Unique Data informs readers about the most recent deep learning-based medical applications in which only unique data gathered in real cases are used. The book provides examples of how deep learning can be used in different problem areas and frameworks in both clinical and research settings, including medical image analysis, medical image registration, time series analysis, medical data synthesis, drug discovery, and pre-processing operations. The volume discusses not only positive findings, but also negative ones obtained by deep learning techniques, including the use of newly developed deep learning techniques rarely reported in the existing literature. The book excludes research works with ready data sets and includes only unique data use to better understand the state of deep learning in real-world cases, along with the feedback and user experiences from physicians and medical staff for applied deep learning-based solutions. Other applications presented in the book include hybrid solutions with deep learning support, disease diagnosis with deep learning focusing on rare diseases and cancer, patient care and treatment, genomics research, as well as research on robotics and autonomous systems. Introduces deep learning, demonstrating concepts for a wide variety of medical applications using unique data, excluding research with ready datasets Encompasses a wide variety of biomedical applications, including unsupervised learning, natural language processing, pattern recognition, image and video processing and disease diagnosis Provides a robust set of methods that will help readers appropriately and judiciously use the most suitable deep learning techniques for their applications

Download or read book Machine Learning and Deep Learning Techniques for Medical Science written by K. Gayathri Devi and published by CRC Press. This book was released on 2022-05-11 with total page 351 pages. Available in PDF, EPUB and Kindle. Book excerpt: The application of machine learning is growing exponentially into every branch of business and science, including medical science. This book presents the integration of machine learning (ML) and deep learning (DL) algorithms that can be applied in the healthcare sector to reduce the time required by doctors, radiologists, and other medical professionals for analyzing, predicting, and diagnosing the conditions with accurate results. The book offers important key aspects in the development and implementation of ML and DL approaches toward developing prediction tools and models and improving medical diagnosis. The contributors explore the recent trends, innovations, challenges, and solutions, as well as case studies of the applications of ML and DL in intelligent system-based disease diagnosis. The chapters also highlight the basics and the need for applying mathematical aspects with reference to the development of new medical models. Authors also explore ML and DL in relation to artificial intelligence (AI) prediction tools, the discovery of drugs, neuroscience, diagnosis in multiple imaging modalities, and pattern recognition approaches to functional magnetic resonance imaging images. This book is for students and researchers of computer science and engineering, electronics and communication engineering, and information technology; for biomedical engineering researchers, academicians, and educators; and for students and professionals in other areas of the healthcare sector. Presents key aspects in the development and the implementation of ML and DL approaches toward developing prediction tools, models, and improving medical diagnosis Discusses the recent trends, innovations, challenges, solutions, and applications of intelligent system-based disease diagnosis Examines DL theories, models, and tools to enhance health information systems Explores ML and DL in relation to AI prediction tools, discovery of drugs, neuroscience, and diagnosis in multiple imaging modalities Dr. K. Gayathri Devi is a Professor at the Department of Electronics and Communication Engineering, Dr. N.G.P Institute of Technology, Tamil Nadu, India. Dr. Kishore Balasubramanian is an Assistant Professor (Senior Scale) at the Department of EEE at Dr. Mahalingam College of Engineering & Technology, Tamil Nadu, India. Dr. Le Anh Ngoc is a Director of Swinburne Innovation Space and Professor in Swinburne University of Technology (Vietnam).

Download or read book Deep Learning for Medical Image Analysis written by S. Kevin Zhou and published by Academic Press. This book was released on 2023-12-01 with total page 544 pages. Available in PDF, EPUB and Kindle. Book excerpt: Deep Learning for Medical Image Analysis, Second Edition is a great learning resource for academic and industry researchers and graduate students taking courses on machine learning and deep learning for computer vision and medical image computing and analysis. Deep learning provides exciting solutions for medical image analysis problems and is a key method for future applications. This book gives a clear understanding of the principles and methods of neural network and deep learning concepts, showing how the algorithms that integrate deep learning as a core component are applied to medical image detection, segmentation, registration, and computer-aided analysis. · Covers common research problems in medical image analysis and their challenges · Describes the latest deep learning methods and the theories behind approaches for medical image analysis · Teaches how algorithms are applied to a broad range of application areas including cardiac, neural and functional, colonoscopy, OCTA applications and model assessment · Includes a Foreword written by Nicholas Ayache

Download or read book Fundamentals of Machine Learning and Deep Learning in Medicine written by Reza Borhani and published by Springer Nature. This book was released on 2022-11-18 with total page 201 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides an accessible introduction to the foundations of machine learning and deep learning in medicine for medical students, researchers, and professionals who are not necessarily initiated in advanced mathematics but yearn for a better understanding of this disruptive technology and its impact on medicine. Once an esoteric subject known to few outside of computer science and engineering departments, today artificial intelligence (AI) is a widely popular technology used by scholars from all across the academic universe. In particular, recent years have seen a great deal of interest in the AI subfields of machine learning and deep learning from researchers in medicine and life sciences, evidenced by the rapid growth in the number of articles published on the topic in peer-reviewed medical journals over the last decade. The demand for high-quality educational resources in this area has never been greater than it is today, and will only continue to grow at a rapid pace. Expert authors remove the veil of unnecessary complexity that often surrounds machine learning and deep learning by employing a narrative style that emphasizes intuition in place of abstract mathematical formalisms, allowing them to strike a delicate balance between practicality and theoretical rigor in service of facilitating the reader’s learning experience. Topics covered in the book include: mathematical encoding of medical data, linear regression and classification, nonlinear feature engineering, deep learning, convolutional and recurrent neural networks, and reinforcement learning. Each chapter ends with a collection of exercises for readers to practice and test their knowledge. This is an ideal introduction for medical students, professionals, and researchers interested in learning more about machine learning and deep learning. Readers who have taken at least one introductory mathematics course at the undergraduate-level (e.g., biostatistics or calculus) will be well-equipped to use this book without needing any additional prerequisites.