Download or read book New Approaches to Prokaryotic Systematics written by Michael Goodfellow and published by Academic Press. This book was released on 2014-11-24 with total page 368 pages. Available in PDF, EPUB and Kindle. Book excerpt: Volume 41 of Methods in Microbiology is a methods book designed to highlight procedures that will revitalize the purposes and practices of prokaryotic systematics.This volume will notably show that genomics and computational biology are pivotal to the new direction of travel and will emphasise that new developments need to be built upon historical good practices, notably the continued use of the nomenclatural type concept and the requirement to deposit type strains in at least two service culture collections in different countries. - Detailed protocols on cutting edge methods - Prepared by leading international experts in the relevant fields

Download or read book Modern Taxonomy of Bacteria and Archaea written by Wen-Jun Li and published by Springer. This book was released on 2024-04-20 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book introduces the current approaches in prokaryotic taxonomy and streamlines the advanced techniques for use in prokaryotic systematics. While highlighting the key differences in the taxonomy of cultured and not-yet-cultured bacteria and archaea, it presents the genomic technology involved in microbial systematics that serves as comprehensive guidelines for isolating and identifying bacteria. Microbial systematics is a fundamentally important discipline area for microbiologists and those seeking to understand Earth’s biodiversity. As bacterial taxonomy is critical in microbial ecology and clinical microbiology works, the correct identification of microbes is crucial. However, the microbial collection existing and described as cultured species so far are either based on the taxonomic pattern that existed during its time of first cultivation. With evolving technology, many microbes were found to be wrongly classified. Therefore, it is essential to keep in contact withthe developing technology and methods for the correct placement of cultured bacteria and their identification. This book is an excellent guideline for adequately identifying, classifying, and describing novel taxa of bacteria and archaea.

Download or read book Chemical Methods in Prokaryotic Systematics written by Michael Goodfellow and published by . This book was released on 1994-08-02 with total page 618 pages. Available in PDF, EPUB and Kindle. Book excerpt: The use of chemical techniques is having a profound effect on approaches to the characterization, classification and identification of prokaryotes, i.e. archaea and bacteria. This book provides a comprehensive, up-to-date treatment of such methods used in prokaryotic systematics and is written by leading specialists in this field. Designed as a laboratory manual, this volume describes the latest applications to prokaryote systematics of powerful techniques such as protein electrophoresis, pyrolysis mass spectrometry and rapid enzyme testing. The extraction, purification and characterization of specific components such as fatty acids, lipid A, peptidoglycan, pigments (carotenoids and bacteriochlorophylls) and isoprenoid quinones are explained. The value of these methods in the circumscription and identification of archaea and bacteria is demonstrated. The book is aimed at microbiologists and microbial technologists interested in characterizing and identifying bacteria.

Download or read book Molecular Identification Systematics and Population Structure of Prokaryotes written by Erko Stackebrandt and published by Springer Science & Business Media. This book was released on 2010-09-08 with total page 328 pages. Available in PDF, EPUB and Kindle. Book excerpt: Systematic biology has a far wider application than merely the provision of a reliable classification scheme for new strains. With the framework of the hierarchic system stabilizing, genomes, noncoding regions, and genes and their products can now be evaluated in an evolutionary context. This book summarizes recent developments in the molecular characterization of cultured and as-yet uncultured prokaryotes, emphasizing the strengths and weaknesses of individual approaches. The chapters of the book are compiled to stimulate students to enter the field of bacterial diversity, presenting a broad spectrum of fascinating multifaceted disciplines that illuminate the paths to ecosystem functioning, communication within communities, symbiosis, life in extreme environments, astrobiology, and more.

Download or read book Taxonomy of Prokaryotes written by and published by Academic Press. This book was released on 2011-12-05 with total page 486 pages. Available in PDF, EPUB and Kindle. Book excerpt: Taxonomy of Prokaryotes, edited by two leading experts in the field, presents the most appropriate up-to-date experimental approaches in the detail required for modern microbiological research. Focusing on the methods most useful for the microbiologist interested in this specialty, this volume will be essential reading for all researchers working in microbiology, immunology, virology, mycology and parasitology. Methods in Microbiology is the most prestigious series devoted to techniques and methodology in the field. Established for over 30 years, Methods in Microbiology will continue to provide you with tried and tested, cutting-edge protocols to directly benefit your research.

Download or read book The Pangenome written by Hervé Tettelin and published by Springer Nature. This book was released on 2020-04-30 with total page 311 pages. Available in PDF, EPUB and Kindle. Book excerpt: This open access book offers the first comprehensive account of the pan-genome concept and its manifold implications. The realization that the genetic repertoire of a biological species always encompasses more than the genome of each individual is one of the earliest examples of big data in biology that opened biology to the unbounded. The study of genetic variation observed within a species challenges existing views and has profound consequences for our understanding of the fundamental mechanisms underpinning bacterial biology and evolution. The underlying rationale extends well beyond the initial prokaryotic focus to all kingdoms of life and evolves into similar concepts for metagenomes, phenomes and epigenomes. The book’s respective chapters address a range of topics, from the serendipitous emergence of the pan-genome concept and its impacts on the fields of microbiology, vaccinology and antimicrobial resistance, to the study of microbial communities, bioinformatic applications and mathematical models that tie in with complex systems and economic theory. Given its scope, the book will appeal to a broad readership interested in population dynamics, evolutionary biology and genomics.

Download or read book International Code of Phylogenetic Nomenclature PhyloCode written by Kevin de Queiroz and published by CRC Press. This book was released on 2020-04-29 with total page 99 pages. Available in PDF, EPUB and Kindle. Book excerpt: The PhyloCode is a set of principles, rules, and recommendations governing phylogenetic nomenclature, a system for naming taxa by explicit reference to phylogeny. In contrast, the current botanical, zoological, and bacteriological codes define taxa by reference to taxonomic ranks (e.g., family, genus) and types. This code will govern the names of clades; species names will still be governed by traditional codes. The PhyloCode is designed so that it can be used concurrently with the rank-based codes. It is not meant to replace existing names but to provide an alternative system for governing the application of both existing and newly proposed names. Key Features Provides clear regulations for naming clades Based on expressly phylogenetic principles Complements existing codes of nomenclature Eliminates the reliance on taxonomic ranks in favor of phylogenetic relationships Related Titles: Rieppel, O. Phylogenetic Systematics: Haeckel to Hennig (ISBN 978-1-4987-5488-0) de Queiroz, K., Cantino, P. D. and Gauthier, J. A. Phylonyms: A Companion to the PhyloCode (ISBN 978-1-138-33293-5).

Download or read book Biology of the Prokaryotes written by Joseph W. Lengeler and published by John Wiley & Sons. This book was released on 2009-07-10 with total page 984 pages. Available in PDF, EPUB and Kindle. Book excerpt: Designed as an upper-level textbook and a reference for researchers, this important book concentrates on central concepts of the bacterial lifestyle. Taking a refreshingly new approach, it present an integrated view of the prokaryotic cell as an organism and as a member of an interacting population. Beginning with a description of cellular structures, the text proceeds through metabolic pathways and metabolic reactions to the genes and regulatory mechanisms. At a higher level of complexity, a discussion of cell differentiation processes is followed by a description of the diversity of prokaryotes and their role in the biosphere. A closing section deals with man and microbes (ie, applied microbiology). The first text to adopt an integrated view of the prokaryotic cell as an organism and as a member of a population. Vividly illustrates the diversity of the prokaryotic world - nearly all the metabolic diversity in living organisms is found in microbes. New developments in applied microbiology highlighted. Extensive linking between related topics allows easy navigation through the book. Essential definitions and conclusions highlighted. Supplementary information in boxes.

Download or read book Microbial Systematics written by Bhagwan Rekadwad and published by CRC Press. This book was released on 2020-11-01 with total page 260 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents recent scientific investigations in microbial ecology and systematics. Advanced microbial science investigations employ the latest technologies for research in microbiology and microbial applications. The book has complete information on classical microbiology techniques for assessment of the composition of microbial diversity assessment, advancement in next-generation technology, advantages of microbial products in sustainable developments and their application for societal benefits. Current research on microorganisms is presented as a perfect book for studies on "Microbial Systematics". This book will serve as an important resource for practising research and review for the scientific community.

Download or read book Molecular Microbial Ecology written by Mark Osborn and published by Taylor & Francis. This book was released on 2004-06-02 with total page 370 pages. Available in PDF, EPUB and Kindle. Book excerpt: Microoganisms are distributed across every ecosystem, and microbial transformations are fundamental to the operation of the biosphere. Microbial ecology is the study of this interaction between microorganisms and their environment, and arguably represents one of the most important areas of biological research. Yet for many years our study of microbial flora was severely limited: the primary method of culturing microorganisms on media allowed us to study only between 0.1 and 10% of the total microbial flora in any given environment. Molecular Microbial Ecology gives a comprehensive guide to the recent revolution in the study of microorganisms in the environment. Details are given on molecular methods for isolating some of the previously uncultured and numerically dominant microbial groups. PCR-based approaches to studying prokaryotic systematics are described, including ribosomal RNA analysis and stable isotope probing. Later chapters cover DNA hybridisation techniques (including fluorescent in situ hybridisation), as well as genomic and metagenomic approaches to microbial ecology. Gathering together some of the world’s leading experts, this book provides an invaluable introduction to the modern theory and molecular methods used in studying microbial ecology.

Download or read book The Prokaryotes written by Stanley Falkow and published by Springer Science & Business Media. This book was released on 2006-11-14 with total page 1105 pages. Available in PDF, EPUB and Kindle. Book excerpt: The revised Third Edition of The Prokaryotes, acclaimed as a classic reference in the field, offers new and updated articles by experts from around the world on taxa of relevance to medicine, ecology and industry. Entries combine phylogenetic and systematic data with insights into genetics, physiology and application. Existing entries have been revised to incorporate rapid progress and technological innovation. The new edition improves on the lucid presentation, logical layout and abundance of illustrations that readers rely on, adding color illustration throughout. Expanded to seven volumes in its print form, the new edition adds a new, searchable online version.

Download or read book Handbook of New Bacterial Systematics written by M. Goodfellow and published by . This book was released on 1993 with total page 584 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides microbiologists with a comprehensive treatment of concepts, ideas, and methods that make up the subject of modern bacterial systematics. It includes not only traditional numerical and chemotaxonomic methods, but also full coverage of molecular systematics. The book is divided into three sections - classification, nomenclature, and identification. The authors are world leaders in the field and many are involved in the "Bergey's manual," which is the bible of the field. Key Features * Provides microbiologists with a comprehensive treatment of the concepts ideas and methods that make up the subject of modern bacterial systematics. * Includes not only traditional numerical and chemotaxonomic methods but also full coverage of molecular systamatics. * Three sections included are: classification, nomenclature and identification. * The authors are world leaders in this subject - many are involved in the "Bergey's manual" which is the bible of the field.

Download or read book The Prokaryotes written by Stanley Falkow and published by Springer Science & Business Media. This book was released on 2006-10-10 with total page 1189 pages. Available in PDF, EPUB and Kindle. Book excerpt: The revised Third Edition of The Prokaryotes, acclaimed as a classic reference in the field, offers new and updated articles by experts from around the world on taxa of relevance to medicine, ecology and industry. Entries combine phylogenetic and systematic data with insights into genetics, physiology and application. Existing entries have been revised to incorporate rapid progress and technological innovation. The new edition improves on the lucid presentation, logical layout and abundance of illustrations that readers rely on, adding color illustration throughout. Expanded to seven volumes in its print form, the new edition adds a new, searchable online version.

Download or read book Trends in the Systematics of Bacteria and Fungi written by Paul Bridge and published by CABI. This book was released on 2020-12-09 with total page 366 pages. Available in PDF, EPUB and Kindle. Book excerpt: Methods in microbial systematics have developed and changed significantly in the last 40 years. This has resulted in considerable change in both the defining microbial species and the methods required to make reliable identifications. Developments in information technology have enabled ready access to vast amounts of new and historic data online. Establishing both the relevance, and the most appropriate use, of this data is now a major consideration when undertaking identifications and systematic research. This book provides some insights into how current methods and resources are being used in microbial systematics, together with some thoughts and suggestions as to how both methodologies and concepts may develop in the future.

Download or read book The New Foundations of Evolution written by Jan Sapp and published by Oxford University Press. This book was released on 2009-07-24 with total page 765 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is the story of a profound revolution in the way biologists explore life's history, understand its evolutionary processes, and reveal its diversity. It is about life's smallest entities, deepest diversity, and greatest cellular biomass: the microbiosphere. Jan Sapp introduces us to a new field of evolutionary biology and a new brand of molecular evolutionists who descend to the foundations of evolution on Earth to explore the origins of the genetic system and the primary life forms from which all others have emerged. In so doing, he examines-from Lamarck to the present-the means of pursuing the evolution of complexity, and of depicting the greatest differences among organisms. The New Foundations of Evolution takes us into a world that classical evolutionists could never have imagined: a deep phylogeny based on three domains of life and multiple kingdoms, and created by mechanisms very unlike those considered by Darwin and his followers. Evolution by leaps seems to occur regularly in the microbial world where molecular evolutionists have shown the inheritance of acquired genes and genomes are major modes of evolutionary innovation. Revisiting the history of microbiology for the first time from the perspective of evolutionary biology, Sapp shows why classical Darwinian conceptions centering on questions of the origin of species were forged without a microbial foundation, why classical microbiologists considered it impossible to know the course of evolution, and classical molecular biologists considered the evolution of the molecular genetic system to be beyond understanding. In telling this stirring story of scientific iconoclasm, this book elucidates how the new evolutionary biology arose, what methods and assumptions underpin it, and the fiery controversies that continue to shape biologists' understanding of the foundations of evolution today.

Download or read book Phylogenetics written by E. O. Wiley and published by John Wiley & Sons. This book was released on 2011-06-07 with total page 444 pages. Available in PDF, EPUB and Kindle. Book excerpt: The long-awaited revision of the industry standard on phylogenetics Since the publication of the first edition of this landmark volume more than twenty-five years ago, phylogenetic systematics has taken its place as the dominant paradigm of systematic biology. It has profoundly influenced the way scientists study evolution, and has seen many theoretical and technical advances as the field has continued to grow. It goes almost without saying that the next twenty-five years of phylogenetic research will prove as fascinating as the first, with many exciting developments yet to come. This new edition of Phylogenetics captures the very essence of this rapidly evolving discipline. Written for the practicing systematist and phylogeneticist, it addresses both the philosophical and technical issues of the field, as well as surveys general practices in taxonomy. Major sections of the book deal with the nature of species and higher taxa, homology and characters, trees and tree graphs, and biogeography—the purpose being to develop biologically relevant species, character, tree, and biogeographic concepts that can be applied fruitfully to phylogenetics. The book then turns its focus to phylogenetic trees, including an in-depth guide to tree-building algorithms. Additional coverage includes: Parsimony and parsimony analysis Parametric phylogenetics including maximum likelihood and Bayesian approaches Phylogenetic classification Critiques of evolutionary taxonomy, phenetics, and transformed cladistics Specimen selection, field collecting, and curating Systematic publication and the rules of nomenclature Providing a thorough synthesis of the field, this important update to Phylogenetics is essential for students and researchers in the areas of evolutionary biology, molecular evolution, genetics and evolutionary genetics, paleontology, physical anthropology, and zoology.

Download or read book Applied Microbial Systematics written by Fergus Priest and published by Springer Science & Business Media. This book was released on 2000-11-30 with total page 508 pages. Available in PDF, EPUB and Kindle. Book excerpt: Modern approaches to microbial classification and identification, particularly those based on nucleic acid analysis, have raised the awareness and interest of microbiologists in systematics during the past decade. The extended scope of the subject has revolutionized microbial ecology with the demonstration of uncultivable microorganisms as a major component of the biosphere and evolution, with the ribosomal RNA phylogenetic tree as the basis of current classifications. However, advances in microbial systematics have also had enormous impact on other, diverse aspects of microbiology such as animal pathogenicity, plant-microbe interactions and relationships with food. In this book, we survey and discuss in depth the contribution of modern taxonomic approaches to our understanding of the microbiology of these various systems. The book does not concentrate on methods - these have been well reported elsewhere - instead it provides a unique insight into the application and value of modern systematics in diverse branches of microbiology. It will be of value to microbiologists at both research and technical levels who need to appreciate the range of organisms with which they work and the diversity within them. It will also be of value to teachers and students of microbiology courses who want to understand how systematics can enhance microbiology beyond the routine of classification, nomenclature, and identification.