Download or read book Modeling Pas Sensors Through in Silico and Genetic Approaches written by Brenda Rojas (Ph.D.) and published by . This book was released on 2022 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: The PAS family of transcription factors play vital roles in important physiological processes. Within this family, PAS sensors, with their characteristic domain, are of interest because they modulate circadian rhythms, xenobiotic metabolism, and oxygen homeostasis, in addition to other functions. The PAS domain was named from the three founding members - Period, Aryl hydrocarbon nuclear translocator, and Sim. Structurally, the domain has been labeled in many ways, however we stick to the PAS A and B nomenclature Our central hypothesis is that PAS proteins are part of a network that coordinate physiological responses to stressors through obscure interactions. To test our hypothesis, we worked on the following aims: (1) To develop a lexicon for the structures partaking in PAS-PAS dimerization, we mined the Protein Data Bank for mammalian proteins. This information helped us refine the terminology and showcase differences between PAS A-PAS A and PAS B-PAS B repeat interactions. Moreover, it taught us that PAS proteins interact with other regions outside their PAS counterpart, thus PAS A-PAS B repeat interconnectivity is common. (2) To determine the ability of our yeast system, based on Saccharomyces cerevisiae strain L40, to accommodate steroid receptor signaling, we introduced and activated the mineralocorticoid, androgen, glucocorticoid, and estrogen Îł receptors individually and exposed them to various ligands. Results from these experiments argue for the possibility of turning our L40 system into a "one-cell system" that can accommodate multiple pathways for complex receptor mixtures. (3) To determine dimerization between PAS B repeats in the prototypical AhR:ARNT complex, we again used our L40 system. We found that PAS B repeats are necessary for successful interconnectivity. Additionally, we took advantage of the new AlphaFold and SwarmDock algorithms to predict PAS B interactions between the AhR and ARA9 and ARA3. This work is significant because it also has the potential to detect biomarkers of disease progression that can function as targets for therapeutic treatments and drugs

Download or read book Encyclopedia of Animal Behavior written by and published by Elsevier. This book was released on 2009-04-01 with total page 2662 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Encyclopedia of Animal Behavior, Three Volume Set has engaged with great success the efforts of many of the best behavioral biologists of the 21st century. Section editors drawn from the most accomplished behavioral scientists of their generation have enrolled an international cast of highly respected thinkers and writers all of whom have taken great care and joy in illuminating every imaginable corner of animal behavior. This comprehensive work covers not only the usual topics such as communication, learning, sexual selection, navigation, and the history of the field, but also emerging topics in cognition, animal welfare, conservation, and applications of animal behavior. The large section on animal cognition brings together many of the world's experts on the subject to provide a comprehensive overview of this rapidly developing area. Chapters relating to animal welfare give a full view of behavioral interactions of humans with companion animals, farm animals, and animals in the wild. The key role of animal behavior in conservation biology receives broad attention, including chapters on topics such as the effects of noise pollution, captive breeding, and how the behavioral effects of parasites interacts with conservation issues. Animal behavior in environmental biology is highlighted in chapters on the effects of endocrine disruptors on behavior and a large number of chapters on key species, such as wolves, chimpanzees, hyenas and sharks. Clear, accessible writing complements a wealth of information for undergraduate college students about the essential concepts of animal behavior and the application of those concepts across the field. In-depth coverage of concepts, methods, and exemplar organisms serves the needs of graduate students and professionals in the field. From the use of behavior in assessing the welfare of pigs to the social behavior of insects, from animal empathy to bat brains, this authoritative reference, with its in-depth introductory articles, rich array of illustrations, interactive cross-referenced links, and numerous suggested readings, can guide the student or the professional to an expanded appreciation of the far-flung world of animal behavior. An invaluable tool for teaching and a source of enrichment and detail for any topic covered in an animal behavior course, the Encyclopedia of Animal Behavior is the definitive reference work in its field and will be for years to come. Comprehensive work which covers the usual topics along with emerging areas of animal behavior This encyclopedia contains clear, accessible writing and is well illustrated, including an online video, complimenting a wealth of information As an online reference, this work will be subject to period updating. This ensures that the work always remains current Contains in-depth introductions to the material that make each well-illustrated section come alive with the best the new content the discipline has to offer Glossary includes a compendium of behavioral terms that form a succinct mosaic of virtually every concept and phenomenon related to animal behavior Section editors, drawn from around the world, represent the best and the brightest among today's behavioral biologists and have recruited a broad range of internationally recognized experts Editors-in-Chief are experienced scientists and writers who between them have authored or edited eight books and teach courses in animal behavior at their respective universities

Download or read book Index Medicus written by and published by . This book was released on 2004 with total page 2432 pages. Available in PDF, EPUB and Kindle. Book excerpt: Vols. for 1963- include as pt. 2 of the Jan. issue: Medical subject headings.

Download or read book The Individual Microbe Single Cell Analysis and Agent Based Modelling written by Johan H. J. Leveau and published by Frontiers Media SA. This book was released on 2019-02-19 with total page 187 pages. Available in PDF, EPUB and Kindle. Book excerpt: Recent technological advances in single-cell microbiology, using flow cytometry, microfluidics, x-ray fluorescence microprobes, and single-cell -omics, allow for the observation of individuals within populations. Simultaneously, individual-based models (or more generally agent-based models) allow for individual microbes to be simulated. Bridging these techniques forms the foundation of individual-based ecology of microbes (µIBE). µIBE has elucidated genetic and phenotypic heterogeneity that has important consequences for a number of human interests, including antibiotic or biocide resistance, the productivity and stability of industrial fermentations, the efficacy of food preservatives, and the potential of pathogens to cause disease. Individual-based models can help us to understand how these sets of traits of individual microbes influence the above. This eBook compiles all publications from a recent Research Topic in Frontiers in Microbiology. It features recent research where individual observational and/or modelling techniques are applied to gain unique insights into the ecology of microorganisms. The Research Topic “The Individual Microbe: Single-Cell Analysis and Agent-Based Modelling” arose from the 2016 @ASM conference of the same name hosted by the American Society for Microbiology at its headquarters in Washington, D.C. We are grateful to ASM for funding and hosting this conference.

Download or read book Biodefense in the Age of Synthetic Biology written by National Academies of Sciences, Engineering, and Medicine and published by National Academies Press. This book was released on 2019-01-05 with total page 189 pages. Available in PDF, EPUB and Kindle. Book excerpt: Scientific advances over the past several decades have accelerated the ability to engineer existing organisms and to potentially create novel ones not found in nature. Synthetic biology, which collectively refers to concepts, approaches, and tools that enable the modification or creation of biological organisms, is being pursued overwhelmingly for beneficial purposes ranging from reducing the burden of disease to improving agricultural yields to remediating pollution. Although the contributions synthetic biology can make in these and other areas hold great promise, it is also possible to imagine malicious uses that could threaten U.S. citizens and military personnel. Making informed decisions about how to address such concerns requires a realistic assessment of the capabilities that could be misused. Biodefense in the Age of Synthetic Biology explores and envisions potential misuses of synthetic biology. This report develops a framework to guide an assessment of the security concerns related to advances in synthetic biology, assesses the levels of concern warranted for such advances, and identifies options that could help mitigate those concerns.

Download or read book Encyclopedia of Animal Behavior G P written by Michael D. Breed and published by Academic Press is. This book was released on 2010 with total page 928 pages. Available in PDF, EPUB and Kindle. Book excerpt: Entries examine a broad array of different species and behavior patterns, using techniques that range from molecular approaches to the study of behavior to analyses of individuals, populations, species, and ecosystems.

Download or read book Trends in Quorum Sensing and Quorum Quenching written by V. Ravishankar Rai and published by CRC Press. This book was released on 2020-05-04 with total page 407 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book on Trends in Quorum Sensing and Quorum Quenching: New Perspectives and Applications focuses on the recent advances in the field of quorum sensing in bacteria and the novel strategies developed for quorum sensing inhibition. The topics covered are multidisciplinary and wide-ranging,and includes quorum sensing phenomenon in pathogenic bacteria, food spoilers, and agriculturally relevant bacteria. The applications of quorum sensing inhibitors such as small molecules, bioactives, natural compounds, and quorum quenching enzymes in controlling bacterial infections in clinical settings, agriculture and aquaculture are discussed. The potential use of quorum quenching enzymes for mitigating biofouling is also covered. Special focus is given to exploring quorum sensing inhibitors from microbes and flora inhabiting biodiversity rich regions including tropical rain forests and marine environments. Key features: Covers the fundamental aspects, the progress and challenges in the field of quorum sensing and quorum quenching Reviews quorum sensing in Gram-positive and Gram-negative bacteria of clinical, agricultural, and industrial relevance Discusses the application and future trends of quorum sensing inhibitors from lab to clinical and environmental settings Provides comprehensive coverage on molecular mechanisms in bacterial signaling

Download or read book Experimental models and model organisms in cardiac electrophysiology Opportunities and challenges written by Ruben Coronel and published by Frontiers Media SA. This book was released on 2023-10-05 with total page 96 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Biotechnological Applications of Quorum Sensing Inhibitors written by Vipin Chandra Kalia and published by Springer. This book was released on 2018-05-30 with total page 473 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book discusses the practical applications of quorum sensing inhibitors for both human and plant health. Quorum sensing inhibitors that disrupt microbial biofilms can be employed to treat bacterial infections. The book describes the various bioactive molecules that can serve as quorum sensing inhibitors to combat deadly bacterial infections, in addition to several synthetic quorum sensing inhibitors. Quorum sensing is the mechanism through which bacteria develop antibiotic resistance. Intended to provide a clearer understanding of the practical applications of quorum sensing inhibitors, the book details how the problem of antibiotic resistance can be countered through the intelligent application of quorum sensing inhibitors.

Download or read book Introduction to the Blood Brain Barrier written by William M. Pardridge and published by Cambridge University Press. This book was released on 1998-08-28 with total page 504 pages. Available in PDF, EPUB and Kindle. Book excerpt: The blood-brain barrier serves to protect the brain from toxic substances whilst simultaneously allowing access to essential nutrients and chemical signals. At the interface between brain and body, knowledge of the blood-brain barrier forms an essential component in the complete understanding of a large proportion of medical disciplines. Nevertheless, it seems that ignorance of both the biology of this important membrane and the methodology suitable for its investigation still remains an impediment to progress in many fields, including, for example, the development of new and efficacious neuropharmaceuticals, cerebrovascular disease, Alzheimer's disease, cerebral AIDS and brain tumours. This introduction for both researchers and clinicians across the medical sciences is intended to aid both those beginning work directly in this area and those wishing simply to be better informed when interpreting information where the blood-brain barrier may be involved. Advances in both methodology and biology are detailed in 50 chapters from international authorities.

Download or read book Simulation of Ecophysiological Processes of Growth in Several Annual Crops written by F. W. T. Penning de Vries and published by Int. Rice Res. Inst.. This book was released on 1989 with total page 280 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book PAS Proteins Regulators and Sensors of Development and Physiology written by Stephen T. Crews and published by Springer Science & Business Media. This book was released on 2003-09-30 with total page 292 pages. Available in PDF, EPUB and Kindle. Book excerpt: PAS proteins control numerous physiological and developmental events, and span phylogeny from bacteria to man. Bacterial and plant PAS proteins act as sensors of environmental stimuli, including light, oxygen, and energy status. Not surprising, given these roles, there is intense investigation of the roles of bHLH-PAS proteins in issues of human health including: (1) cancer induction, (2) cancer growth and vascularity, (3) birth defects, including Down syndrome, (4) appetite control and obesity, (5) sleep rhythm disorders, and (6) mental health disorders such as social interactions and learning. PAS proteins encompass many fields of biology, and scientists who work in these fields (circadian rhythms, oxygen regulation, toxin metabolism, bacterial sensors, and development) are an audience, particularly those who actively work on PAS proteins and researchers interested in transcriptional control, signal transduction, and evolution.

Download or read book The Science and Applications of Synthetic and Systems Biology written by Institute of Medicine and published by National Academies Press. This book was released on 2011-12-30 with total page 570 pages. Available in PDF, EPUB and Kindle. Book excerpt: Many potential applications of synthetic and systems biology are relevant to the challenges associated with the detection, surveillance, and responses to emerging and re-emerging infectious diseases. On March 14 and 15, 2011, the Institute of Medicine's (IOM's) Forum on Microbial Threats convened a public workshop in Washington, DC, to explore the current state of the science of synthetic biology, including its dependency on systems biology; discussed the different approaches that scientists are taking to engineer, or reengineer, biological systems; and discussed how the tools and approaches of synthetic and systems biology were being applied to mitigate the risks associated with emerging infectious diseases. The Science and Applications of Synthetic and Systems Biology is organized into sections as a topic-by-topic distillation of the presentations and discussions that took place at the workshop. Its purpose is to present information from relevant experience, to delineate a range of pivotal issues and their respective challenges, and to offer differing perspectives on the topic as discussed and described by the workshop participants. This report also includes a collection of individually authored papers and commentary.

Download or read book Catalyzing Inquiry at the Interface of Computing and Biology written by National Research Council and published by National Academies Press. This book was released on 2006-01-01 with total page 469 pages. Available in PDF, EPUB and Kindle. Book excerpt: Advances in computer science and technology and in biology over the last several years have opened up the possibility for computing to help answer fundamental questions in biology and for biology to help with new approaches to computing. Making the most of the research opportunities at the interface of computing and biology requires the active participation of people from both fields. While past attempts have been made in this direction, circumstances today appear to be much more favorable for progress. To help take advantage of these opportunities, this study was requested of the NRC by the National Science Foundation, the Department of Defense, the National Institutes of Health, and the Department of Energy. The report provides the basis for establishing cross-disciplinary collaboration between biology and computing including an analysis of potential impediments and strategies for overcoming them. The report also presents a wealth of examples that should encourage students in the biological sciences to look for ways to enable them to be more effective users of computing in their studies.

Download or read book Next Generation Sequencing written by Jerzy Kulski and published by BoD – Books on Demand. This book was released on 2016-01-14 with total page 466 pages. Available in PDF, EPUB and Kindle. Book excerpt: Next generation sequencing (NGS) has surpassed the traditional Sanger sequencing method to become the main choice for large-scale, genome-wide sequencing studies with ultra-high-throughput production and a huge reduction in costs. The NGS technologies have had enormous impact on the studies of structural and functional genomics in all the life sciences. In this book, Next Generation Sequencing Advances, Applications and Challenges, the sixteen chapters written by experts cover various aspects of NGS including genomics, transcriptomics and methylomics, the sequencing platforms, and the bioinformatics challenges in processing and analysing huge amounts of sequencing data. Following an overview of the evolution of NGS in the brave new world of omics, the book examines the advances and challenges of NGS applications in basic and applied research on microorganisms, agricultural plants and humans. This book is of value to all who are interested in DNA sequencing and bioinformatics across all fields of the life sciences.

Download or read book Sub molecular Mechanism of Genetic Epilepsy written by Weiping Liao and published by Frontiers Media SA. This book was released on 2022-08-29 with total page 139 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Artificial Riboswitches written by Atsushi Ogawa and published by Humana. This book was released on 2016-09-03 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Artificial riboswitches and other ligand-responsive gene regulators make it possible to switch protein synthesis ON or OFF with arbitrary ligand molecules. Artificial Riboswitches: Methods and Protocols focuses on the state-of-the-art methods developed in recent years for creating artificial riboswitches, therefore this volume could be regarded as a collection of recipes for the gene circuit elements in synthetic biology and metabolic engineering. Chapters cover topics such as screening or rational design methods for obtaining artificial riboswitches that function in either bacterial or eukaryotic translational systems, protocols for evaluating the activities of the resultant riboswitches, as well as protocols for construction of ligand-dependent, trans-acting gene regulators. Written in the successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols, and notes on troubleshooting and avoiding known pitfalls. Authoritative and easily accessible, Artificial Riboswitches: Methods and Protocols seeks to serve not only bioengineers who aim to reprogram cell behaviors and molecular biologists who leverage these regulators for genetic studies, but to all researchers interested in this fascinating field.