Download or read book Deep Subsurface Microbiology written by Andreas Teske and published by Frontiers Media SA. This book was released on 2015-07-01 with total page 305 pages. Available in PDF, EPUB and Kindle. Book excerpt: Deep subsurface microbiology is a highly active and rapidly advancing research field at the interface of microbiology and the geosciences; it focuses on the detection, identification, quantification, cultivation and activity measurements of bacteria, archaea and eukaryotes that permeate the subsurface biosphere of deep marine sediments and the basaltic ocean and continental crust. The deep subsurface biosphere abounds with uncultured, only recently discovered and – at best - incompletely understood microbial populations. In spatial extent and volume, Earth's subsurface biosphere is only rivaled by the deep sea water column. So far, no deep subsurface sediment has been found that is entirely devoid of microbial life; microbial cells and DNA remain detectable at sediment depths of more than 1 km; microbial life permeates deeply buried hydrocarbon reservoirs, and is also found several kilometers down in continental crust aquifers. Severe energy limitation, either as electron acceptor or donor shortage, and scarcity of microbially degradable organic carbon sources are among the evolutionary pressures that have shaped the genomic and physiological repertoire of the deep subsurface biosphere. Its biogeochemical role as long-term organic carbon repository, inorganic electron and energy source, and subduction recycling engine continues to be explored by current research at the interface of microbiology, geochemistry and biosphere/geosphere evolution. This Research Topic addresses some of the central research questions about deep subsurface microbiology and biogeochemistry: phylogenetic and physiological microbial diversity in the deep subsurface; microbial activity and survival strategies in severely energy-limited subsurface habitats; microbial activity as reflected in process rates and gene expression patterns; biogeographic isolation and connectivity in deep subsurface microbial communities; the ecological standing of subsurface biospheres in comparison to the surface biosphere – an independently flourishing biosphere, or mere survivors that tolerate burial (along with organic carbon compounds), or a combination of both? Advancing these questions on Earth’s deep subsurface biosphere redefines the habitat range, environmental tolerance, activity and diversity of microbial life.
Download or read book Geomicrobes Life in Terrestrial Deep Subsurface written by Malin Bomberg and published by Frontiers Media SA. This book was released on 2017-07-17 with total page 143 pages. Available in PDF, EPUB and Kindle. Book excerpt: The deep subsurface is, in addition to space, one of the last unknown frontiers to human kind. A significant part of life on Earth resides in the deep subsurface, hiding great potential of microbial life of which we know only little. The conditions in the deep terrestrial subsurface are thought to resemble those of early Earth, which makes this environment an analog for studying early life in addition to possible extraterrestrial life in ultra-extreme conditions. Early microorganisms played a great role in shaping the conditions on the young Earth. Even today deep subsurface microorganisms interact with their geological environment transforming the conditions in the groundwater and on rock surfaces. Essential elements for life are richly present but in difficultly accessible form. The elements driving the microbial deep life is still not completely identified. Most of the microorganisms detected by novel molecular techniques still lack cultured representatives. Nevertheless, using modern sequencing techniques and bioinformatics the functional roles of these microorganisms are being revealed. We are starting to see the differences and similarities between the life in the deep subsurface and surface domains. We may even begin to see the function of evolution by comparing deep life to life closer to the surface of Earth. Deep life consists of organisms from all known domains of life. This Research Topic reveals some of the rich diversity and functional properties of the great biomass residing in the deep dark subsurface.
Download or read book Microbiology of the Terrestrial Deep Subsurface written by Penny S. Amy and published by CRC Press. This book was released on 2018-01-10 with total page 368 pages. Available in PDF, EPUB and Kindle. Book excerpt: Obtaining and analyzing samples is challenging in subsurface science. This first-of-its-kind reference book addresses accomplishments in this field-from drilling to sample work-up. A collaborative approach is taken, involving the efforts of microbiologists, geochemists, hydrologists, and drilling and mining experts to present a comprehensive view of subsurface research. The text provides practical information about obtaining, analyzing, and evaluating subsurface materials; the current status of subsurface microbial ecology; and describes several applications that will interest a variety of readers, including engineers, physical, and life scientists.
Download or read book The Chemistry of Microbiomes written by National Academies of Sciences, Engineering, and Medicine and published by National Academies Press. This book was released on 2017-07-19 with total page 133 pages. Available in PDF, EPUB and Kindle. Book excerpt: The 21st century has witnessed a complete revolution in the understanding and description of bacteria in eco- systems and microbial assemblages, and how they are regulated by complex interactions among microbes, hosts, and environments. The human organism is no longer considered a monolithic assembly of tissues, but is instead a true ecosystem composed of human cells, bacteria, fungi, algae, and viruses. As such, humans are not unlike other complex ecosystems containing microbial assemblages observed in the marine and earth environments. They all share a basic functional principle: Chemical communication is the universal language that allows such groups to properly function together. These chemical networks regulate interactions like metabolic exchange, antibiosis and symbiosis, and communication. The National Academies of Sciences, Engineering, and Medicine's Chemical Sciences Roundtable organized a series of four seminars in the autumn of 2016 to explore the current advances, opportunities, and challenges toward unveiling this "chemical dark matter" and its role in the regulation and function of different ecosystems. The first three focused on specific ecosystemsâ€"earth, marine, and humanâ€"and the last on all microbiome systems. This publication summarizes the presentations and discussions from the seminars.
Download or read book The Deep Hot Biosphere written by Thomas Gold and published by Springer Science & Business Media. This book was released on 2013-12-01 with total page 248 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book sets forth a set of truly controversial and astonishing theories: First, it proposes that below the surface of the earth is a biosphere of greater mass and volume than the biosphere the total sum of living things on our planet's continents and in its oceans. Second, it proposes that the inhabitants of this subterranean biosphere are not plants or animals as we know them, but heat-loving bacteria that survive on a diet consisting solely of hydrocarbons that is, natural gas and petroleum. And third and perhaps most heretically, the book advances the stunning idea that most hydrocarbons on Earth are not the byproduct of biological debris ("fossil fuels"), but were a common constituent of the materials from which the earth itself was formed some 4.5 billion years ago. The implications are astounding. The theory proposes answers to often-asked questions: Is the deep hot biosphere where life originated, and do Mars and other seemingly barren planets contain deep biospheres? Even more provocatively, is it possible that there is an enormous store of hydrocarbons upwelling from deep within the earth that can provide us with abundant supplies of gas and petroleum? However far-fetched these ideas seem, they are supported by a growing body of evidence, and by the indisputable stature and seriousness Gold brings to any scientific debate. In this book we see a brilliant and boldly original thinker, increasingly a rarity in modern science, as he develops potentially revolutionary ideas about how our world works.
Download or read book The Prokaryotes written by Edward F. DeLong and published by Springer. This book was released on 2014-10-13 with total page 567 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Prokaryotes is a comprehensive, multi-authored, peer reviewed reference work on Bacteria and Achaea. This fourth edition of The Prokaryotes is organized to cover all taxonomic diversity, using the family level to delineate chapters. Different from other resources, this new Springer product includes not only taxonomy, but also prokaryotic biology and technology of taxa in a broad context. Technological aspects highlight the usefulness of prokaryotes in processes and products, including biocontrol agents and as genetics tools. The content of the expanded fourth edition is divided into two parts: Part 1 contains review chapters dealing with the most important general concepts in molecular, applied and general prokaryote biology; Part 2 describes the known properties of specific taxonomic groups. Two completely new sections have been added to Part 1: bacterial communities and human bacteriology. The bacterial communities section reflects the growing realization that studies on pure cultures of bacteria have led to an incomplete picture of the microbial world for two fundamental reasons: the vast majority of bacteria in soil, water and associated with biological tissues are currently not culturable, and that an understanding of microbial ecology requires knowledge on how different bacterial species interact with each other in their natural environment. The new section on human microbiology deals with bacteria associated with healthy humans and bacterial pathogenesis. Each of the major human diseases caused by bacteria is reviewed, from identifying the pathogens by classical clinical and non-culturing techniques to the biochemical mechanisms of the disease process. The 4th edition of The Prokaryotes is the most complete resource on the biology of prokaryotes. The following volumes are published consecutively within the 4th Edition: Prokaryotic Biology and Symbiotic Associations Prokaryotic Communities and Ecophysiology Prokaryotic Physiology and Biochemistry Applied Bacteriology and Biotechnology Human Microbiology Actinobacteria Firmicutes Alphaproteobacteria and Betaproteobacteria Gammaproteobacteria Deltaproteobacteria and Epsilonproteobacteria Other Major Lineages of Bacteria and the Archaea
Download or read book Microbes The Foundation Stone of the Biosphere written by Christon J. Hurst and published by Springer Nature. This book was released on 2021-05-01 with total page 684 pages. Available in PDF, EPUB and Kindle. Book excerpt: This collection of essays discusses fascinating aspects of the concept that microbes are at the root of all ecosystems. The content is divided into seven parts, the first of those emphasizes that microbes not only were the starting point, but sustain the rest of the biosphere and shows how life evolves through a perpetual struggle for habitats and niches. Part II explains the ways in which microbial life persists in some of the most extreme environments, while Part III presents our understanding of the core aspects of microbial metabolism. Part IV examines the duality of the microbial world, acknowledging that life exists as a balance between certain processes that we perceive as being environmentally supportive and others that seem environmentally destructive. In turn, Part V discusses basic aspects of microbial symbioses, including interactions with other microorganisms, plants and animals. The concept of microbial symbiosis as a driving force in evolution is covered in Part VI. In closing, Part VII explores the adventure of microbiological research, including some reminiscences from and perspectives on the lives and careers of microbe hunters. Given its mixture of science and philosophy, the book will appeal to scientists and advanced students of microbiology, evolution and ecology alike.
Download or read book Manual of Environmental Microbiology written by Christon J. Hurst and published by American Society for Microbiology Press. This book was released on 2007-05-14 with total page 3023 pages. Available in PDF, EPUB and Kindle. Book excerpt: The most definitive manual of microbes in air, water, and soil and their impact on human health and welfare. • Incorporates a summary of the latest methodology used to study the activity and fate of microorganisms in various environments. • Synthesizes the latest information on the assessment of microbial presence and microbial activity in natural and artificial environments. • Features a section on biotransformation and biodegradation. • Serves as an indispensable reference for environmental microbiologists, microbial ecologists, and environmental engineers, as well as those interested in human diseases, water and wastewater treatment, and biotechnology.
Download or read book Deep Carbon written by Beth N. Orcutt and published by Cambridge University Press. This book was released on 2020 with total page 687 pages. Available in PDF, EPUB and Kindle. Book excerpt: A comprehensive guide to carbon inside Earth - its quantities, movements, forms, origins, changes over time and impact on planetary processes. This title is also available as Open Access on Cambridge Core.
Download or read book The Spatial Distribution of Microbes in the Environment written by Rima Franklin and published by Springer Science & Business Media. This book was released on 2007-09-04 with total page 339 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume highlights recent advances that have contributed to our understanding of spatial patterns and scale issues in microbial ecology. The book brings together research conducted at a range of spatial scales (from μm to km) and in a variety of different types of environments. These topics are addressed in a quantitative manner, and a primer on statistical methods is included. In soil ecosystems, both bacteria and fungi are discussed.
Download or read book Carbon in Earth s Interior written by Craig E. Manning and published by John Wiley & Sons. This book was released on 2020-04-03 with total page 373 pages. Available in PDF, EPUB and Kindle. Book excerpt: Carbon in Earth's fluid envelopes - the atmosphere, biosphere, and hydrosphere, plays a fundamental role in our planet's climate system and a central role in biology, the environment, and the economy of earth system. The source and original quantity of carbon in our planet is uncertain, as are the identities and relative importance of early chemical processes associated with planetary differentiation. Numerous lines of evidence point to the early and continuing exchange of substantial carbon between Earth's surface and its interior, including diamonds, carbon-rich mantle-derived magmas, carbonate rocks in subduction zones and springs carrying deeply sourced carbon-bearing gases. Thus, there is little doubt that a substantial amount of carbon resides in our planet's interior. Yet, while we know it must be present, carbon's forms, transformations and movements at conditions relevant to the interiors of Earth and other planets remain uncertain and untapped. Volume highlights include: - Reviews key, general topics, such as carbonate minerals, the deep carbon cycle, and carbon in magmas or fluids - Describes new results at the frontiers of the field with presenting results on carbon in minerals, melts, and fluids at extreme conditions of planetary interiors - Brings together emerging insights into carbon's forms, transformations and movements through study of the dynamics, structure, stability and reactivity of carbon-based natural materials - Reviews emerging new insights into the properties of allied substances that carry carbon, into the rates of chemical and physical transformations, and into the complex interactions between moving fluids, magmas, and rocks to the interiors of Earth and other planets - Spans the various chemical redox states of carbon, from reduced hydrocarbons to zero-valent diamond and graphite to oxidized CO2 and carbonates - Captures and synthesizes the exciting results of recent, focused efforts in an emerging scientific discipline - Reports advances over the last decade that have led to a major leap forward in our understanding of carbon science - Compiles the range of methods that can be tapped tap from the deep carbon community, which includes experimentalists, first principles theorists, thermodynamic modelers and geodynamicists - Represents a reference point for future deep carbon science research Carbon in Planetary Interiors will be a valuable resource for researchers and students who study the Earth's interior. The topics of this volume are interdisciplinary, and therefore will be useful to professionals from a wide variety of fields in the Earth Sciences, such as mineral physics, petrology, geochemistry, experimentalists, first principles theorists, thermodynamics, material science, chemistry, geophysics and geodynamics.
Download or read book Their World A Diversity of Microbial Environments written by Christon J. Hurst and published by Springer. This book was released on 2016-05-11 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume summarizes recent advances in environmental microbiology by providing fascinating insights into the diversity of microbial life that exists on our planet. The first two chapters present theoretical perspectives that help to consolidate our understanding of evolution as an adaptive process by which the niche and habitat of each species develop in a manner that interconnects individual components of an ecosystem. This results in communities that function by simultaneously coordinating their metabolic and physiologic actions. The third contribution addresses the fossil record of microorganisms, and the subsequent chapters then introduce the microbial life that currently exists in various terrestrial and aquatic ecosystems. Coverage of the geosphere addresses endolithic organisms, life in caves and the deep continental biosphere, including how subsurface microbial life may impact spent nuclear fuel repositories. The discussion of the hydrosphere includes hypersaline environments and arctic food chains. By better understanding examples from the micro biosphere, we can elucidate the many ways in which the niches of different species, both large and small, interconnect within the overlapping habitats of this world, which is governed by its microorganisms.
Download or read book The Social Biology of Microbial Communities written by Institute of Medicine and published by National Academies Press. This book was released on 2013-01-10 with total page 633 pages. Available in PDF, EPUB and Kindle. Book excerpt: Beginning with the germ theory of disease in the 19th century and extending through most of the 20th century, microbes were believed to live their lives as solitary, unicellular, disease-causing organisms . This perception stemmed from the focus of most investigators on organisms that could be grown in the laboratory as cellular monocultures, often dispersed in liquid, and under ambient conditions of temperature, lighting, and humidity. Most such inquiries were designed to identify microbial pathogens by satisfying Koch's postulates.3 This pathogen-centric approach to the study of microorganisms produced a metaphorical "war" against these microbial invaders waged with antibiotic therapies, while simultaneously obscuring the dynamic relationships that exist among and between host organisms and their associated microorganisms-only a tiny fraction of which act as pathogens. Despite their obvious importance, very little is actually known about the processes and factors that influence the assembly, function, and stability of microbial communities. Gaining this knowledge will require a seismic shift away from the study of individual microbes in isolation to inquiries into the nature of diverse and often complex microbial communities, the forces that shape them, and their relationships with other communities and organisms, including their multicellular hosts. On March 6 and 7, 2012, the Institute of Medicine's (IOM's) Forum on Microbial Threats hosted a public workshop to explore the emerging science of the "social biology" of microbial communities. Workshop presentations and discussions embraced a wide spectrum of topics, experimental systems, and theoretical perspectives representative of the current, multifaceted exploration of the microbial frontier. Participants discussed ecological, evolutionary, and genetic factors contributing to the assembly, function, and stability of microbial communities; how microbial communities adapt and respond to environmental stimuli; theoretical and experimental approaches to advance this nascent field; and potential applications of knowledge gained from the study of microbial communities for the improvement of human, animal, plant, and ecosystem health and toward a deeper understanding of microbial diversity and evolution. The Social Biology of Microbial Communities: Workshop Summary further explains the happenings of the workshop.
Download or read book Environmental Microbiology written by Ian Pepper and published by Academic Press. This book was released on 2011-10-13 with total page 621 pages. Available in PDF, EPUB and Kindle. Book excerpt: For microbiology and environmental microbiology courses, this leading textbook builds on the academic success of the previous edition by including a comprehensive and up-to-date discussion of environmental microbiology as a discipline that has grown in scope and interest in recent years. From environmental science and microbial ecology to topics in molecular genetics, this edition relates environmental microbiology to the work of a variety of life science, ecology, and environmental science investigators. The authors and editors have taken the care to highlight links between environmental microbiology and topics important to our changing world such as bioterrorism and national security with sections on practical issues such as bioremediation, waterborne pathogens, microbial risk assessment, and environmental biotechnology.WHY ADOPT THIS EDITION? New chapters on: - Urban Environmental Microbiology - Bacterial Communities in Natural Ecosystems - Global Change and Microbial Infectious Disease - Microorganisms and Bioterrorism - Extreme Environments (emphasizing the ecology of these environments) - Aquatic Environments (now devoted to its own chapter- was combined with Extreme Environments) Updates to Methodologies: - Nucleic Acid -Based Methods: microarrays, phyloarrays, real-time PCR, metagomics, and comparative genomics - Physiological Methods: stable isotope fingerprinting and functional genomics and proteomics-based approaches - Microscopic Techniques: FISH (fluorescent in situ hybridization) and atomic force microscopy - Cultural Methods: new approaches to enhanced cultivation of environmental bacteria - Environmental Sample Collection and Processing: added section on air sampling
Download or read book Environmental Microbiology and Microbial Ecology written by Larry L. Barton and published by John Wiley & Sons. This book was released on 2019-03-26 with total page 467 pages. Available in PDF, EPUB and Kindle. Book excerpt: An authoritative overview of the ecological activities of microbes in the biosphere Environmental Microbiology and Microbial Ecology presents a broad overview of microbial activity and microbes' interactions with their environments and communities. Adopting an integrative approach, this text covers both conventional ecological issues as well as cross-disciplinary investigations that combine facets of microbiology, ecology, environmental science and engineering, molecular biology, and biochemistry. Focusing primarily on single-cell forms of prokaryotes — and cellular forms of algae, fungi, and protozoans — this book enables readers to gain insight into the fundamental methodologies for the characterization of microorganisms in the biosphere. The authors draw from decades of experience to examine the environmental processes mediated by microorganisms and explore the interactions between microorganisms and higher life forms. Highly relevant to modern readers, this book examines topics including the ecology of microorganisms in engineered environments, microbial phylogeny and interactions, microbial processes in relation to environmental pollution, and many more. Now in its second edition, this book features updated references and major revisions to chapters on assessing microbial communities, community relationships, and their global impact. New content such as effective public communication of research findings and advice on scientific article review equips readers with practical real-world skills. Explores the activities of microorganisms in specific environments with case studies and actual research data Highlights how prominent microbial biologists address significant microbial ecology issues Offers guidance on scientific communication, including scientific presentations and grant preparation Includes plentiful illustrations and examples of microbial interactions, community structures, and human-bacterial connections Provides chapter summaries, review questions, selected reading lists, a complete glossary, and critical thinking exercises Environmental Microbiology and Microbial Ecology is an ideal textbook for graduate and advanced undergraduate courses in biology, microbiology, ecology, and environmental science, while also serving as a current and informative reference for microbiologists, cell and molecular biologists, ecologists, and environmental professionals.
Download or read book Polar Microbiology written by Asim K. Bej and published by CRC Press. This book was released on 2009-12-23 with total page 424 pages. Available in PDF, EPUB and Kindle. Book excerpt: Pollution has accompanied polar exploration since Captain John Davis' arrival on the Antarctic continent in 1821 and has become an unavoidable consequence of oil spills in our polar regions. Fortunately, many of the organisms indigenous to Polar ecosystems have the ability to degrade pollutants. It is this metabolic capacity that forms the basis fo
Download or read book Thermophilic Bacteria written by Jakob K. Kristjansson and published by CRC Press. This book was released on 1991-11-22 with total page 238 pages. Available in PDF, EPUB and Kindle. Book excerpt: Thermophilic Bacteria is a comprehensive volume that describes all major bacterial groups that can grow above 60-65°C (excluding the Archaea). Over 60 different species of aerobic and anaerobic thermophilic bacteria are covered. Isolation, growth methods, characterization and identification, ecology, metabolism, and enzymology of thermophilic bacteria are examined in detail, and an extensive compilation of recent biotechnological applications and the properties of many thermostable enzymes are also included. Major topics discussed in the book include a general review on thermophilic bacteria and archaea; heterotropic bacilli; the genus Thermus; new and rare genera of aerobic heterophophs, such as Saccharococcus, Rhodothermus, and Scotohermus; aerobic chemolithoautotrophic thermophilic bacteria; obligately anaerobic thermophilic bacteria; and hyperthermophilic Thermotogales and thermophilic phototrophs. Extensive bibliographies are also provided for each chapter. The vast amount of information packed into this one volume makes it essential for all microbiologists, biochemists, molecular biologists, and students interested in the expanding field of thermophilicity. Biotechnologists will find the book useful as a source of information on thermophiles or thermostable enzymes of possible industrial use.
