Download or read book Mathematica for Bioinformatics written by George Mias and published by Springer. This book was released on 2018-03-16 with total page 397 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book offers a comprehensive introduction to using Mathematica and the Wolfram Language for Bioinformatics. The chapters build gradually from basic concepts and the introduction of the Wolfram Language and coding paradigms in Mathematica, to detailed worked examples derived from typical research applications using Wolfram Language code. The coding examples range from basic sequence analysis, accessing genomic databases, differential gene expression, and machine learning implementations to time series analysis of longitudinal omics experiments, multi-omics integration and building dynamic interactive bioinformatics tools using the Wolfram Language. The topics address the daily bioinformatics needs of a broad audience: experimental users looking to understand and visualize their data, beginner bioinformaticians acquiring coding expertise in providing biological research solutions, and practicing expert bioinformaticians working on omics who wish to expand their toolset to include the Wolfram Language.
Download or read book Programming with Mathematica written by Paul Wellin and published by Cambridge University Press. This book was released on 2013-01-10 with total page 731 pages. Available in PDF, EPUB and Kindle. Book excerpt: This practical, example-driven introduction teaches the foundations of the Mathematica language so it can be applied to solving concrete problems.
Download or read book Mathematical Biology written by Ronald W. Shonkwiler and published by Springer Science & Business Media. This book was released on 2009-08-04 with total page 552 pages. Available in PDF, EPUB and Kindle. Book excerpt: This text presents mathematical biology as a field with a unity of its own, rather than only the intrusion of one science into another. The book focuses on problems of contemporary interest, such as cancer, genetics, and the rapidly growing field of genomics.
Download or read book Beginning Mathematica and Wolfram for Data Science written by Jalil Villalobos Alva and published by Apress. This book was released on 2021-03-28 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Enhance your data science programming and analysis with the Wolfram programming language and Mathematica, an applied mathematical tools suite. The book introduces you to the Wolfram programming language and its syntax, as well as the structure of Mathematica and its advantages and disadvantages. You’ll see how to use the Wolfram language for data science from a theoretical and practical perspective. Learning this language makes your data science code better because it is very intuitive and comes with pre-existing functions that can provide a welcoming experience for those who use other programming languages. You’ll cover how to use Mathematica where data management and mathematical computations are needed. Along the way you’ll appreciate how Mathematica provides a complete integrated platform: it has a mixed syntax as a result of its symbolic and numerical calculations allowing it to carry out various processes without superfluous lines of code. You’ll learn to use its notebooks as a standard format, which also serves to create detailed reports of the processes carried out. What You Will Learn Use Mathematica to explore data and describe the concepts using Wolfram language commands Create datasets, work with data frames, and create tables Import, export, analyze, and visualize data Work with the Wolfram data repository Build reports on the analysis Use Mathematica for machine learning, with different algorithms, including linear, multiple, and logistic regression; decision trees; and data clustering The fundamentals of the Wolfram Neural Network Framework and how to build your neural network for different tasks How to use pre-trained models from the Wolfram Neural Net Repository Who This Book Is For Data scientists new to using Wolfram and Mathematica as a language/tool to program in. Programmers should have some prior programming experience, but can be new to the Wolfram language.
Download or read book Mathematical Biology II written by James D. Murray and published by Springer Science & Business Media. This book was released on 2011-02-15 with total page 834 pages. Available in PDF, EPUB and Kindle. Book excerpt: This richly illustrated third edition provides a thorough training in practical mathematical biology and shows how exciting mathematical challenges can arise from a genuinely interdisciplinary involvement with the biosciences. It has been extensively updated and extended to cover much of the growth of mathematical biology. From the reviews: ""This book, a classical text in mathematical biology, cleverly combines mathematical tools with subject area sciences."--SHORT BOOK REVIEWS
Download or read book Mathematics of Genome Analysis written by Jerome K. Percus and published by Cambridge University Press. This book was released on 2002 with total page 154 pages. Available in PDF, EPUB and Kindle. Book excerpt: The massive research effort known as the Human Genome Project is an attempt to record the sequence of the three trillion nucleotides that make up the human genome and to identify individual genes within this sequence. While the basic effort is of course a biological one, the description and classification of sequences also lend themselves naturally to mathematical and statistical modeling. This short textbook on the mathematics of genome analysis presents a brief description of several ways in which mathematics and statistics are being used in genome analysis and sequencing. It will be of interest not only to students but also to professional mathematicians curious about the subject.
Download or read book An Introduction to Programming with Mathematica written by Richard J. Gaylord and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 467 pages. Available in PDF, EPUB and Kindle. Book excerpt: Accompanying the book, as with all TELOS sponsored publications, is an electronic component. In this case it is a DOS-Diskette produced by one of the coauthors, Paul Wellin. This diskette consists of Mathematica notebooks and packages which contain the codes for all examples and exercises in the book, as well as additional materials intended to extend many ideas covered in the text. It is of great value to teachers, students, and others using this book to learn how to effectively program with Mathematica .
Download or read book The Mathematica GuideBook for Programming written by Michael Trott and published by Springer. This book was released on 2013-12-21 with total page 1060 pages. Available in PDF, EPUB and Kindle. Book excerpt: This comprehensive, detailed reference provides readers with both a working knowledge of Mathematica in general and a detailed knowledge of the key aspects needed to create the fastest, shortest, and most elegant implementations possible. It gives users a deeper understanding of Mathematica by instructive implementations, explanations, and examples from a range of disciplines at varying levels of complexity. The three volumes -- Programming, Graphics, and Mathematics, total 3,000 pages and contain more than 15,000 Mathematica inputs, over 1,500 graphics, 4,000+ references, and more than 500 exercises. This first volume begins with the structure of Mathematica expressions, the syntax of Mathematica, its programming, graphic, numeric and symbolic capabilities. It then covers the hierarchical construction of objects out of symbolic expressions, the definition of functions, the recognition of patterns and their efficient application, program flows and program structuring, and the manipulation of lists. An indispensible resource for students, researchers and professionals in mathematics, the sciences, and engineering.
Download or read book Essentials of Programming in Mathematica written by Paul Wellin and published by Cambridge University Press. This book was released on 2016 with total page 439 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book covers Mathematica® for beginners. An example-driven text covering a wide variety of applications, containing over 350 exercises with solutions available online.
Download or read book Illustrating Evolutionary Computation with Mathematica written by Christian Jacob and published by Elsevier. This book was released on 2001-02-23 with total page 605 pages. Available in PDF, EPUB and Kindle. Book excerpt: An essential capacity of intelligence is the ability to learn. An artificially intelligent system that could learn would not have to be programmed for every eventuality; it could adapt to its changing environment and conditions just as biological systems do. Illustrating Evolutionary Computation with Mathematica introduces evolutionary computation to the technically savvy reader who wishes to explore this fascinating and increasingly important field. Unique among books on evolutionary computation, the book also explores the application of evolution to developmental processes in nature, such as the growth processes in cells and plants. If you are a newcomer to the evolutionary computation field, an engineer, a programmer, or even a biologist wanting to learn how to model the evolution and coevolution of plants, this book will provide you with a visually rich and engaging account of this complex subject.* Introduces the major mechanisms of biological evolution.* Demonstrates many fascinating aspects of evolution in nature with simple, yet illustrative examples.* Explains each of the major branches of evolutionary computation: genetic algorithms, genetic programming, evolutionary programming, and evolution strategies.* Demonstrates the programming of computers by evolutionary principles using Evolvica, a genetic programming system designed by the author.* Shows in detail how to evolve developmental programs modeled by cellular automata and Lindenmayer systems.* Provides Mathematica notebooks on the Web that include all the programs in the book and supporting animations, movies, and graphics.
Download or read book An Elementary Introduction to the Wolfram Language written by Stephen Wolfram and published by Wolfram Research, Incorporated. This book was released on 2017 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Wolfram Language represents a major advance in programming languages that makes leading-edge computation accessible to everyone. Unique in its approach of building in vast knowledge and automation, the Wolfram Language scales from a single line of easy-to-understand interactive code to million-line production systems. This book provides an elementary introduction to the Wolfram Language and modern computational thinking. It assumes no prior knowledge of programming, and is suitable for both technical and non-technical college and high-school students, as well as anyone with an interest in the latest technology and its practical application.
Download or read book An Introduction to Undergraduate Research in Computational and Mathematical Biology written by Hannah Callender Highlander and published by Springer Nature. This book was released on 2020-02-17 with total page 479 pages. Available in PDF, EPUB and Kindle. Book excerpt: Speaking directly to the growing importance of research experience in undergraduate mathematics programs, this volume offers suggestions for undergraduate-appropriate research projects in mathematical and computational biology for students and their faculty mentors. The aim of each chapter is twofold: for faculty, to alleviate the challenges of identifying accessible topics and advising students through the research process; for students, to provide sufficient background, additional references, and context to excite students in these areas and to enable them to successfully undertake these problems in their research. Some of the topics discussed include: • Oscillatory behaviors present in real-world applications, from seasonal outbreaks of childhood diseases to action potentials in neurons • Simulating bacterial growth, competition, and resistance with agent-based models and laboratory experiments • Network structure and the dynamics of biological systems • Using neural networks to identify bird species from birdsong samples • Modeling fluid flow induced by the motion of pulmonary cilia Aimed at undergraduate mathematics faculty and advanced undergraduate students, this unique guide will be a valuable resource for generating fruitful research collaborations between students and faculty.
Download or read book Exploring Abstract Algebra With Mathematica written by Allen C. Hibbard and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 476 pages. Available in PDF, EPUB and Kindle. Book excerpt: This upper-division laboratory supplement for courses in abstract algebra consists of several Mathematica packages programmed as a foundation for group and ring theory. Additionally, the "user's guide" illustrates the functionality of the underlying code, while the lab portion of the book reflects the contents of the Mathematica-based electronic notebooks. Students interact with both the printed and electronic versions of the material in the laboratory, and can look up details and reference information in the user's guide. Exercises occur in the stream of the text of the lab, which provides a context within which to answer, and the questions are designed to be either written into the electronic notebook, or on paper. The notebooks are available in both 2.2 and 3.0 versions of Mathematica, and run across all platforms for which Mathematica exits. A very timely and unique addition to the undergraduate abstract algebra curriculum, filling a tremendous void in the literature.
Download or read book Bioinformatics written by David Edwards and published by Springer Science & Business Media. This book was released on 2009-09-03 with total page 450 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bioinformatics is a relatively new field of research. It evolved from the requirement to process, characterize, and apply the information being produced by DNA sequencing technology. The production of DNA sequence data continues to grow exponentially. At the same time, improved bioinformatics such as faster DNA sequence search methods have been combined with increasingly powerful computer systems to process this information. Methods are being developed for the ever more detailed quantification of gene expression, providing an insight into the function of the newly discovered genes, while molecular genetic tools provide a link between these genes and heritable traits. Genetic tests are now available to determine the likelihood of suffering specific ailments and can predict how plant cultivars may respond to the environment. The steps in the translation of the genetic blueprint to the observed phenotype is being increasingly understood through proteome, metabolome and phenome analysis, all underpinned by advances in bioinformatics. Bioinformatics is becoming increasingly central to the study of biology, and a day at a computer can often save a year or more in the laboratory. The volume is intended for graduate-level biology students as well as researchers who wish to gain a better understanding of applied bioinformatics and who wish to use bioinformatics technologies to assist in their research. The volume would also be of value to bioinformatics developers, particularly those from a computing background, who would like to understand the application of computational tools for biological research. Each chapter would include a comprehensive introduction giving an overview of the fundamentals, aimed at introducing graduate students and researchers from diverse backgrounds to the field and bring them up-to-date on the current state of knowledge. To accommodate the broad range of topics in applied bioinformatics, chapters have been grouped into themes: gene and genome analysis, molecular genetic analysis, gene expression analysis, protein and proteome analysis, metabolome analysis, phenome data analysis, literature mining and bioinformatics tool development. Each chapter and theme provides an introduction to the biology behind the data describes the requirements for data processing and details some of the methods applied to the data to enhance biological understanding.
Download or read book Mathematical Models in Biology written by Elizabeth Spencer Allman and published by Cambridge University Press. This book was released on 2004 with total page 388 pages. Available in PDF, EPUB and Kindle. Book excerpt: This introductory textbook on mathematical biology focuses on discrete models across a variety of biological subdisciplines. Biological topics treated include linear and non-linear models of populations, Markov models of molecular evolution, phylogenetic tree construction, genetics, and infectious disease models. The coverage of models of molecular evolution and phylogenetic tree construction from DNA sequence data is unique among books at this level. Computer investigations with MATLAB are incorporated throughout, in both exercises and more extensive projects, to give readers hands-on experience with the mathematical models developed. MATLAB programs accompany the text. Mathematical tools, such as matrix algebra, eigenvector analysis, and basic probability, are motivated by biological models and given self-contained developments, so that mathematical prerequisites are minimal.
Download or read book The MATHEMATICA Book Version 3 written by Stephen Wolfram and published by . This book was released on 1996-07-13 with total page 1403 pages. Available in PDF, EPUB and Kindle. Book excerpt: With over a million users around the world, the Mathematica ® software system created by Stephen Wolfram has defined the direction of technical computing for nearly a decade. With its major new document and computer language technology, the new version, Mathematica 3.0 takes the top-power capabilities of Mathematica and make them accessible to a vastly broader audience. This book presents this revolutionary new version of Mathematica. The Mathematica Book is a must-have purchase for anyone who wants to understand the revolutionary opportunities in science, technology, business and education made possible by Mathematica 3.0. This encompasses a broad audience of scientists and mathematicians; engineers; computer professionals; quantitative financial analysts; medical researchers; and students at high-school, college and graduate levels. Written by the creator of the system, The Mathematica Book includes both a tutorial introduction and complete reference information, and contains a comprehensive description of how to take advantage of Mathematica's ability to solve myriad technical computing problems and its powerful graphical and typesetting capabilities. Like previous editions, the book is sure to be found well-thumbed on the desks of many technical professionals and students around the world.
Download or read book The Student s Introduction to Mathematica and the Wolfram Language written by Bruce F. Torrence and published by Cambridge University Press. This book was released on 2019-05-16 with total page 550 pages. Available in PDF, EPUB and Kindle. Book excerpt: The unique feature of this compact student's introduction to Mathematica® and the Wolfram LanguageTM is that the order of the material closely follows a standard mathematics curriculum. As a result, it provides a brief introduction to those aspects of the Mathematica® software program most useful to students. Used as a supplementary text, it will help bridge the gap between Mathematica® and the mathematics in the course, and will serve as an excellent tutorial for former students. There have been significant changes to Mathematica® since the second edition, and all chapters have now been updated to account for new features in the software, including natural language queries and the vast stores of real-world data that are now integrated through the cloud. This third edition also includes many new exercises and a chapter on 3D printing that showcases the new computational geometry capabilities that will equip readers to print in 3D.
