Download or read book Marker assisted Selection and Prediction of Hybrid Performance in Maize written by Buppa Kongsamai and published by . This book was released on 2004 with total page 148 pages. Available in PDF, EPUB and Kindle. Book excerpt: In this study, MAS was applied to select the superior individuals from a single-cross hybrid population in maize. The 133 single-crosses, developed by random crossing between the recombinant inbred lines of the B73xDe811 (F6[Subscript :]-- ) and Mo17xH99 (F6[Subscript :]) population, were evaluated in 2001 and 2002. Eight economically important traits were recorded on a plot mean basis. The first study involved the comparison of the predictive ability of four predictive models for assessing genetic values of individual single-crosses for each trait. Four predictive models including principal component regression (PCR) and stepwise regression (STR) with the individual and integrated marker data from parental populations (ind-PCR, int-PCR, ind-STR, and int-STR) were compared. The result showed that the int-PCR model was the best model in predicting genetic values of individuals with minimizing the integrated means square error (IMSE) and maximizing coefficient of the correlation between the observed and the predicted values (r̄[Subscript op]) for tested and untested individuals. The int-PCR model was then used for estimating genetic values (marker scores) of individual single-crosses in the second study, where the objective of the second study was to compare the efficiency of MAS to phenotypic selection (PS) when selection was performed for each trait. Four selection schemes were used: (1) selection based on phenotype only (PS); (2) selection based on marker scores only (MS); (3) selection based on the combination of marker score and phenotype via selection indices (MPS); and (4) tandem marker scores and phenotypic selection (TMPS). Each was applied in selecting 20 individuals with the best performance for each trait of interest. The results showed that all selection schemes were successful in selecting the superior individuals according to their selection differentials and responses to selection. MS was inferior to PS in most cases. While TMPS and MPS appeared to be as effective as or better than PS in selecting for superior individuals according to their responses to selection, their percentages of selected lines in common with PS, and their theoretical efficiency in genetic improvement relative to PS, particularly for the traits with low heritability, i.e., root and stalk lodging.
Download or read book Prediction of Hybrid Performance in Maize Using Molecular Markers written by Tobias Schrag and published by . This book was released on 2008 with total page 78 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Quantitative Genetics in Maize Breeding written by Arnel R. Hallauer and published by Springer Science & Business Media. This book was released on 2010-09-28 with total page 669 pages. Available in PDF, EPUB and Kindle. Book excerpt: Maize is used in an endless list of products that are directly or indirectly related to human nutrition and food security. Maize is grown in producer farms, farmers depend on genetically improved cultivars, and maize breeders develop improved maize cultivars for farmers. Nikolai I. Vavilov defined plant breeding as plant evolution directed by man. Among crops, maize is one of the most successful examples for breeder-directed evolution. Maize is a cross-pollinated species with unique and separate male and female organs allowing techniques from both self and cross-pollinated crops to be utilized. As a consequence, a diverse set of breeding methods can be utilized for the development of various maize cultivar types for all economic conditions (e.g., improved populations, inbred lines, and their hybrids for different types of markets). Maize breeding is the science of maize cultivar development. Public investment in maize breeding from 1865 to 1996 was $3 billion (Crosbie et al., 2004) and the return on investment was $260 billion as a consequence of applied maize breeding, even without full understanding of the genetic basis of heterosis. The principles of quantitative genetics have been successfully applied by maize breeders worldwide to adapt and improve germplasm sources of cultivars for very simple traits (e.g. maize flowering) and very complex ones (e.g., grain yield). For instance, genomic efforts have isolated early-maturing genes and QTL for potential MAS but very simple and low cost phenotypic efforts have caused significant and fast genetic progress across genotypes moving elite tropical and late temperate maize northward with minimal investment. Quantitative genetics has allowed the integration of pre-breeding with cultivar development by characterizing populations genetically, adapting them to places never thought of (e.g., tropical to short-seasons), improving them by all sorts of intra- and inter-population recurrent selection methods, extracting lines with more probability of success, and exploiting inbreeding and heterosis. Quantitative genetics in maize breeding has improved the odds of developing outstanding maize cultivars from genetically broad based improved populations such as B73. The inbred-hybrid concept in maize was a public sector invention 100 years ago and it is still considered one of the greatest achievements in plant breeding. Maize hybrids grown by farmers today are still produced following this methodology and there is still no limit to genetic improvement when most genes are targeted in the breeding process. Heterotic effects are unique for each hybrid and exotic genetic materials (e.g., tropical, early maturing) carry useful alleles for complex traits not present in the B73 genome just sequenced while increasing the genetic diversity of U.S. hybrids. Breeding programs based on classical quantitative genetics and selection methods will be the basis for proving theoretical approaches on breeding plans based on molecular markers. Mating designs still offer large sample sizes when compared to QTL approaches and there is still a need to successful integration of these methods. There is a need to increase the genetic diversity of maize hybrids available in the market (e.g., there is a need to increase the number of early maturing testers in the northern U.S.). Public programs can still develop new and genetically diverse products not available in industry. However, public U.S. maize breeding programs have either been discontinued or are eroding because of decreasing state and federal funding toward basic science. Future significant genetic gains in maize are dependent on the incorporation of useful and unique genetic diversity not available in industry (e.g., NDSU EarlyGEM lines). The integration of pre-breeding methods with cultivar development should enhance future breeding efforts to maintain active public breeding programs not only adapting and improving genetically broad-based germplasm but also developing unique products and training the next generation of maize breeders producing research dissertations directly linked to breeding programs. This is especially important in areas where commercial hybrids are not locally bred. More than ever public and private institutions are encouraged to cooperate in order to share breeding rights, research goals, winter nurseries, managed stress environments, and latest technology for the benefit of producing the best possible hybrids for farmers with the least cost. We have the opportunity to link both classical and modern technology for the benefit of breeding in close cooperation with industry without the need for investing in academic labs and time (e.g., industry labs take a week vs months/years in academic labs for the same work). This volume, as part of the Handbook of Plant Breeding series, aims to increase awareness of the relative value and impact of maize breeding for food, feed, and fuel security. Without breeding programs continuously developing improved germplasm, no technology can develop improved cultivars. Quantitative Genetics in Maize Breeding presents principles and data that can be applied to maximize genetic improvement of germplasm and develop superior genotypes in different crops. The topics included should be of interest of graduate students and breeders conducting research not only on breeding and selection methods but also developing pure lines and hybrid cultivars in crop species. This volume is a unique and permanent contribution to breeders, geneticists, students, policy makers, and land-grant institutions still promoting quality research in applied plant breeding as opposed to promoting grant monies and indirect costs at any short-term cost. The book is dedicated to those who envision the development of the next generation of cultivars with less need of water and inputs, with better nutrition; and with higher percentages of exotic germplasm as well as those that pursue independent research goals before searching for funding. Scientists are encouraged to use all possible breeding methodologies available (e.g., transgenics, classical breeding, MAS, and all possible combinations could be used with specific sound long and short-term goals on mind) once germplasm is chosen making wise decisions with proven and scientifically sound technologies for assisting current breeding efforts depending on the particular trait under selection. Arnel R. Hallauer is C. F. Curtiss Distinguished Professor in Agriculture (Emeritus) at Iowa State University (ISU). Dr. Hallauer has led maize-breeding research for mid-season maturity at ISU since 1958. His work has had a worldwide impact on plant-breeding programs, industry, and students and was named a member of the National Academy of Sciences. Hallauer is a native of Kansas, USA. José B. Miranda Filho is full-professor in the Department of Genetics, Escola Superior de Agricultura Luiz de Queiroz - University of São Paulo located at Piracicaba, Brazil. His research interests have emphasized development of quantitative genetic theory and its application to maize breeding. Miranda Filho is native of Pirassununga, São Paulo, Brazil. M.J. Carena is professor of plant sciences at North Dakota State University (NDSU). Dr. Carena has led maize-breeding research for short-season maturity at NDSU since 1999. This program is currently one the of the few public U.S. programs left integrating pre-breeding with cultivar development and training in applied maize breeding. He teaches Quantitative Genetics and Crop Breeding Techniques at NDSU. Carena is a native of Buenos Aires, Argentina. http://www.ag.ndsu.nodak.edu/plantsci/faculty/Carena.htm
Download or read book Marker assisted Selection written by Food and Agriculture Organization of the United Nations and published by Food & Agriculture Org.. This book was released on 2007 with total page 498 pages. Available in PDF, EPUB and Kindle. Book excerpt: A comprehensive description and assessment of the use of marker-assisted selection for increasing the rate of genetic gain in crops, livestock, forestry and fish, including the related policy, FAO's tradition of dealing with issues of importance to agricultural and economic development in a multidisciplinary and cross-sectoral manner.
Download or read book Genomic Selection for Crop Improvement written by Rajeev K. Varshney and published by Springer. This book was released on 2017-12-05 with total page 265 pages. Available in PDF, EPUB and Kindle. Book excerpt: Genomic Selection for Crop Improvement serves as handbook for users by providing basic as well as advanced understandings of genomic selection. This useful review explains germplasm use, phenotyping evaluation, marker genotyping methods, and statistical models involved in genomic selection. It also includes examples of ongoing activities of genomic selection for crop improvement and efforts initiated to deploy the genomic selection in some important crops. In order to understand the potential of GS breeding, it is high time to bring complete information in the form of a book that can serve as a ready reference for geneticist and plant breeders.
Download or read book Resource Allocation and Genomic Prediction in Maize Zea Mays L Hybrid Breeding and a Genetic Analysis of Pericarp Pigmentation written by Dylan Schoemaker and published by . This book was released on 2024 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Maize (Zea mays L.) is a globally important crop species sold as a hybrid and is a model system for both genetics and plant breeding research. The maize breeding process involves identification of new inbred lines, followed by the identification and production of commercial hybrids from crosses of inbreds. Genomic selection and evaluation of hybrid phenotypes are important components of this process. In this dissertation, I use a large multi-environment trial dataset to explore the impact of resource allocation when developing genomic prediction models. Resource-efficient training sets can be developed using three to five environments and a single tester to predict both plant height and grain yield. A second study in my dissertation focused on prediction of hybrid combinations and the importance of general and specific combining ability in identifying new hybrids. The results demonstrated that hybrids with the greatest grain yield result from parents with a high general combining ability, but hybrids with the greatest performance may not have the largest specific combining ability deviation. Therefore, modeling only additive genetic relationships can lead to an accurate genomic prediction model during early-stage testing in a hybrid maize breeding program. The third study in my dissertation was a genetic analysis of pericarp pigmentation in progenies of commercial dent germplasm. Allelic variation at the well-studied pericarp color1 (P1) locus was significantly associated with pericarp pigmentation. The results from these projects provide novel insight into the design of hybrid breeding programs and the allocation of resources when implementing genomic selection. The research also provides candidate genes for geneticists or maize breeders to aid in the development of inbred lines with novel pericarp hues and elite agronomic characteristics.
Download or read book Genetic Mapping and Marker Assisted Selection written by N Manikanda Boopathi and published by Springer Science & Business Media. This book was released on 2012-12-12 with total page 304 pages. Available in PDF, EPUB and Kindle. Book excerpt: Genetic mapping and marker assisted selection (MAS) is considered as one of the major tools in genetic improvement of crop plants in this genomics era. This book describes basics in linkage mapping, step-by-step procedure to perform MAS, achievements made so far in different crops, and limitations and prospects of MAS in plant breeding. It summarizes all this in a simple but comprehensive mode using suitable examples so as to explain the concept and its historical developments. To summarize, this book describes technologies for identification of genes of interest through genetic mapping, recaps the major applications of MAS to plant breeding; lists examples in which MAS is being applied to various breeding programs, and emphasizes the various difficulties that limit the application of MAS in plant breeding, providing possible solutions to overcome these difficulties, and finally tries to illustrate the future prospects. This book would be a valuable guide to the under-graduates and post-graduates of agricultural universities and institutes that are interested and/or involved in genetic improvement of crop plants using modern tools. Bibliography listed in this book constitutes two parts: literature cited and further reading. Literature cited contains references cited in the text and further information on the given concept/technique can be obtained from these references. Further reading provides a list of suggested readings for in-depth coverage of the topics.
Download or read book Genomic Prediction of Complex Traits written by Nourollah Ahmadi and published by Springer Nature. This book was released on 2022-04-22 with total page 651 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume explores the conceptual framework and the practical issues related to genomic prediction of complex traits in human medicine and in animal and plant breeding. The book is organized into five parts. Part One reminds molecular genetics approaches intending to predict phenotypic variations. Part Two presents the principles of genomic prediction of complex traits, and reviews factors that affect its reliability. Part Three describes genomic prediction methods, including machine-learning approaches, accounting for different degree of biological complexity, and reviews the associated computer-packages. Part Four reports on emerging trends such as phenomic prediction and incorporation into genomic prediction models of “omics” data and crop growth models. Part Five is dedicated to lessons learned from cases studies in the fields of human health and animal and plant breeding, and to methods for analysis of the economic effectiveness of genomic prediction. Written in the highly successful Methods in Molecular Biology series format, the book provides theoretical bases and practical guidelines for an informed decision making of practitioners and identifies pertinent routes for further methodological researches. Cutting-edge and thorough, Complex Trait Predictions: Methods and Protocols is a valuable resource for scientists and researchers who are interested in learning more about this important and developing field. Chapters 3, 9, 13, 14, and 21 are available open access under a Creative Commons Attribution 4.0 International License via link.springer.com.
Download or read book The Maize Genome written by Jeffrey Bennetzen and published by Springer. This book was released on 2018-11-24 with total page 390 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book discusses advances in our understanding of the structure and function of the maize genome since publication of the original B73 reference genome in 2009, and the progress in translating this knowledge into basic biology and trait improvement. Maize is an extremely important crop, providing a large proportion of the world’s human caloric intake and animal feed, and serving as a model species for basic and applied research. The exceptionally high level of genetic diversity within maize presents opportunities and challenges in all aspects of maize genetics, from sequencing and genotyping to linking genotypes to phenotypes. Topics covered in this timely book range from (i) genome sequencing and genotyping techniques, (ii) genome features such as centromeres and epigenetic regulation, (iii) tools and resources available for trait genomics, to (iv) applications of allele mining and genomics-assisted breeding. This book is a valuable resource for researchers and students interested in maize genetics and genomics.
Download or read book Genomic Selection in Plants written by Ani A. Elias and published by CRC Press. This book was released on 2022-08-18 with total page 265 pages. Available in PDF, EPUB and Kindle. Book excerpt: Genomic selection (GS) is a promising tool in the field of breeding especially in the era where genomic data is becoming cheaper. The potential of this tool has not been realized due to its limited adaptation in various crops. Marker Assisted Selection (MAS) has been the method of choice for plant breeders while using the genomic information in the breeding pipeline. MAS, however, fails to capture vital minor gene effects while focusing only on the major genes, which is not ideal for breeding advancement especially for quantitative traits such as yield. The main aim of statistical methodologies coming under the umbrella of GS on using the whole genome information is to predict potential candidates for breeding advancement while optimizing the use of resources such as land, manpower, and most importantly time. Lack of proper understanding of the methods and their applications is one of the reasons why breeders shy away from this tool. The book is meant for biologists, especially breeders, and provides a comprehensive idea of the statistical methodologies used in GS, guidance on the choice of models, and design of datasets. The book also encourages the readers to adopt GS by demonstrating the current scenarios of these models in some of the important crops among oilseeds, vegetables, legumes, tuber crops, and cereals. For ease of implementation of GS, the book also provides hands-on scripts on GS data design and modeling in a popular open-source statistical program. Additionally, prospective in GS model development and thereby enhancement in crop improvement programs is discussed.
Download or read book Genetics and Exploitation of Heterosis in Crops written by J. G. Coors and published by . This book was released on 1999 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Explore the momentous contributions of hybrid crop varieties with worldwide experts. Topics include an overview, quantitative genetics, genetic diversity, biochemistry and molecular biology, methodologies, commercial strategies, and examples from numerous crops.
Download or read book Quantitative Approaches to Plant Breeding Concepts Strategies and Practical Applications written by Suchismita Mondal and published by Frontiers Media SA. This book was released on 2022-08-31 with total page 238 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book DNA Marker assisted Improvement of the Staple Crops of Sub Saharan Africa written by Abdou Tenkouano and published by IITA. This book was released on 1999 with total page 242 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Genomic Selection in Plants written by Ani A. Elias and published by CRC Press. This book was released on 2022-08-18 with total page 233 pages. Available in PDF, EPUB and Kindle. Book excerpt: Genomic selection (GS) is a promising tool in the field of breeding especially in the era where genomic data is becoming cheaper. The potential of this tool has not been realized due to its limited adaptation in various crops. Marker Assisted Selection (MAS) has been the method of choice for plant breeders while using the genomic information in the breeding pipeline. MAS, however, fails to capture vital minor gene effects while focusing only on the major genes, which is not ideal for breeding advancement especially for quantitative traits such as yield. The main aim of statistical methodologies coming under the umbrella of GS on using the whole genome information is to predict potential candidates for breeding advancement while optimizing the use of resources such as land, manpower, and most importantly time. Lack of proper understanding of the methods and their applications is one of the reasons why breeders shy away from this tool. The book is meant for biologists, especially breeders, and provides a comprehensive idea of the statistical methodologies used in GS, guidance on the choice of models, and design of datasets. The book also encourages the readers to adopt GS by demonstrating the current scenarios of these models in some of the important crops among oilseeds, vegetables, legumes, tuber crops, and cereals. For ease of implementation of GS, the book also provides hands-on scripts on GS data design and modeling in a popular open-source statistical program. Additionally, prospective in GS model development and thereby enhancement in crop improvement programs is discussed.
Download or read book Plant Breeding Reviews Volume 23 written by Jules Janick and published by John Wiley & Sons. This book was released on 2010-04-07 with total page 377 pages. Available in PDF, EPUB and Kindle. Book excerpt: Plant Breeding Reviews is an open-ended, serial continuation series of review articles on research in plant genetics, especially the breeding of commercially important crops. This detailed analysis bridges the gap between the specialized researcher and the broader community of plant scientists.
Download or read book Sorghum Molecular Breeding written by R. Madhusudhana and published by Springer. This book was released on 2015-08-20 with total page 231 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides an up-to-date overview of international research work on sorghum. Its comprehensive coverage of our current understanding of transgenic development in sorghum and the strategies that are being applied in molecular breeding make this book unique. Important areas such as genetic diversity, QTL mapping, heterosis prediction, genomic and bioinformatics resources, post-genome sequencing developments, molecular markers development using bioinformatics tools, genetic transformation and transgenic research are also addressed. The availability of the genome sequence along with other recent developments in sequencing and genotyping technologies has resulted in considerable advances in the area of sorghum genomics. These in turn have led to the generation of a large number of DNA-based markers and resulted in the identification and fine mapping of QTL associated with grain yield, its component traits, biotic and abiotic stress tolerance as well as grain quality traits in sorghum. Though a large volume of information has accumulated over the years, especially following the sequencing of the sorghum genome, until now it was not available in a single reference resource. This book fills that gap by documenting advances in the genomics and transgenic research in sorghum and presenting critical reviews and future prospects. “Sorghum Molecular Breeding” is an essential guide for students, researchers and managers who are involved in the area of molecular breeding and transgenic research in sorghum and plant biologists in general.
Download or read book Breeding for drought and nitrogen stress tolerance in maize From theory to practice written by M. Bänzinger and published by CIMMYT. This book was released on 2000 with total page 69 pages. Available in PDF, EPUB and Kindle. Book excerpt: Introduction - why breed for drought and low N tolerance?; Conceptual framework - breeding; Conventional approaches to improving the drought and low N tolerance of maize; Conventional approaches challenged; The challenge of breeding for drought and low N tolerance; Maize under drought and low N stress; Conceptual framework - physiology; Water and the maize plant; Nitrogen and the maize plant; Maize under drought and low N stress - consequences for breeding; Stress management; Drought; Low N stress; Statistical designs and layout of experiments; Increasing the number of replicates; Improved statistical designs; Field layout; Border effects from alleys; Secondary traits; Why use secondary traits?; How do we decide on the value of secondary traits in a drought or low N breeding program?; Secondary traits that help to identify drought tolerance; Secondary traits that help to identify low N tolerance: Selection indices - Combining information on secondary traits with grain yield; Combining information from various experiments; Breeding strategies; Choice of germplasm; Breeding schemes; Biotechnology: potential and constraints for improving drought and low N tolerance; The role of the farmer in selection; What is farmer participatory research and why is it important?; What is new about farmer participatory research?; Participatory methodologies.
