Download or read book High Throughput Phenotyping in the Genomic Improvement of Livestock written by Fabyano Fonseca Silva and published by Frontiers Media SA. This book was released on 2021-08-03 with total page 216 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book High Throughput Phenotyping for Crop Improvement and Breeding written by Ankush Prashar and published by Frontiers Media SA. This book was released on 2022-02-04 with total page 206 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Advances in Animal Genomics written by Sukanta Mondal and published by Academic Press. This book was released on 2020-12-25 with total page 338 pages. Available in PDF, EPUB and Kindle. Book excerpt: Advances in Animal Genomics provides an outstanding collection of integrated strategies involving traditional and modern - omics (structural, functional, comparative and epigenomics) approaches and genomics-assisted breeding methods which animal biotechnologists can utilize to dissect and decode the molecular and gene regulatory networks involved in the complex quantitative yield and stress tolerance traits in livestock. Written by international experts on animal genomics, this book explores the recent advances in high-throughput, next-generation whole genome and transcriptome sequencing, array-based genotyping, and modern bioinformatics approaches which have enabled to produce huge genomic and transcriptomic resources globally on a genome-wide scale. This book is an important resource for researchers, students, educators and professionals in agriculture, veterinary and biotechnology sciences that enables them to solve problems regarding sustainable development with the help of current innovative biotechnologies. Integrates basic and advanced concepts of animal biotechnology and presents future developments Describes current high-throughput next-generation whole genome and transcriptome sequencing, array-based genotyping, and modern bioinformatics approaches for sustainable livestock production Illustrates integrated strategies to dissect and decode the molecular and gene regulatory networks involved in complex quantitative yield and stress tolerance traits in livestock Ensures readers will gain a strong grasp of biotechnology for sustainable livestock production with its well-illustrated discussion
Download or read book Explanatory Model Analysis written by Przemyslaw Biecek and published by CRC Press. This book was released on 2021-02-15 with total page 312 pages. Available in PDF, EPUB and Kindle. Book excerpt: Explanatory Model Analysis Explore, Explain and Examine Predictive Models is a set of methods and tools designed to build better predictive models and to monitor their behaviour in a changing environment. Today, the true bottleneck in predictive modelling is neither the lack of data, nor the lack of computational power, nor inadequate algorithms, nor the lack of flexible models. It is the lack of tools for model exploration (extraction of relationships learned by the model), model explanation (understanding the key factors influencing model decisions) and model examination (identification of model weaknesses and evaluation of model's performance). This book presents a collection of model agnostic methods that may be used for any black-box model together with real-world applications to classification and regression problems.
Download or read book Advances in Statistical Methods for Genetic Improvement of Livestock written by Daniel Gianola and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 554 pages. Available in PDF, EPUB and Kindle. Book excerpt: Developments in statistics and computing as well as their application to genetic improvement of livestock gained momentum over the last 20 years. This text reviews and consolidates the statistical foundations of animal breeding. This text will prove useful as a reference source to animal breeders, quantitative geneticists and statisticians working in these areas. It will also serve as a text in graduate courses in animal breeding methodology with prerequisite courses in linear models, statistical inference and quantitative genetics.
Download or read book Integrating High throughput Phenotyping Genomic Selection and Spatial Analysis for Plant Breeding and Management written by Margaret Rose Krause and published by . This book was released on 2019 with total page 220 pages. Available in PDF, EPUB and Kindle. Book excerpt: Recent advances in high-throughput phenotyping, genomics, and precision agriculture have provided plant breeders and farmers with a wealth of information on the growth and development of crop plants. Methods for effectively leveraging these data resources are needed in order to drive genetic gain in breeding programs and to increase efficiency in farming systems. Three novel approaches for the development and management of high yielding, adapted crop varieties are presented. First, aerial hyperspectral reflectance phenotypes of bread wheat (Triticum aestivum L.) were used to develop relationship matrices for the prediction of grain yield within and across environments with genomic selection. Multi-kernel models combining marker/pedigree information with hyperspectral reflectance phenotypes gave the highest accuracies overall; however, improvements in accuracy over single-kernel marker- and pedigree-based models were reduced when correcting for days to heading. Second, aerial phenotypes collected on small, unreplicated plots representing the seed limited stage of wheat breeding programs were evaluated for their potential use as selection criteria for improving grain yield. The aerial phenotypes were shown to be heritable and positively correlated with grain yield measurements evaluated in replicated yield trials. Results also suggest that selection on aerial phenotypes at the seed-limited stage would cause a directional response in phenology due to confounding of those traits. Lastly, on-farm trials were conducted in collaboration with the New York Corn and Soybean Growers Association to identify optimal planting rates for corn (Zea mays L.) and soybean (Glycine max L.) given the underlying spatial variability of the soil and topographical characteristics of the fields. A random forest regression-based approach was created to develop variable rate planting designs for maximizing yields.
Download or read book Genetic Improvement of Farmed Animals written by Geoff Simm and published by CABI. This book was released on 2020-11-26 with total page 505 pages. Available in PDF, EPUB and Kindle. Book excerpt: Genetic Improvement of Farmed Animals provides a thorough grounding in the basic sciences underpinning farmed animal breeding. Relating science to practical application, it covers all the major farmed animal species: cattle, sheep, goats, poultry, pigs and aquaculture species.
Download or read book High Throughput Crop Phenotyping written by Jianfeng Zhou and published by Springer Nature. This book was released on 2021-07-17 with total page 249 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides an overview of the innovations in crop phenotyping using emerging technologies, i.e., high-throughput crop phenotyping technology, including its concept, importance, breakthrough and applications in different crops and environments. Emerging technologies in sensing, machine vision and high-performance computing are changing the world beyond our imagination. They are also becoming the most powerful driver of the innovation in agriculture technology, including crop breeding, genetics and management. It includes the state of the art of technologies in high-throughput phenotyping, including advanced sensors, automation systems, ground-based or aerial robotic systems. It also discusses the emerging technologies of big data processing and analytics, such as advanced machine learning and deep learning technologies based on high-performance computing infrastructure. The applications cover different organ levels (root, shoot and seed) of different crops (grains, soybean, maize, potato) at different growth environments (open field and controlled environments). With the contribution of more than 20 world-leading researchers in high-throughput crop phenotyping, the authors hope this book provides readers the needed information to understand the concept, gain the insides and create the innovation of high-throughput phenotyping technology.
Download or read book Genetic Improvement Of Livestock And Poultry written by C.V. Singh and published by New India Publishing Agency. This book was released on 2013-01-15 with total page 7 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book presents conventional and modern breeding technologies in the vital areas of animal breeding, to stimulate more research, and to rapidly pass such modern techniques to scientific community. Various conventional breeding technologies used for selection and faster multiplication of superior cattle and buffalo germplasm have contributed significantly to increase in milk production, which were mainly due to the technologies developed in the areas of quantitative genetics and reproductive biology. These included methodologies for selection of females based upon their expected producing ability and young males based on the performance of progeny. Emerging developments in the areas of molecular marker systems in animals, genome maps, methods of detecting Quantitative Trait Loci (QTL) linkages, Marker Assisted Selection (MAS) etc., are latest tools to be used in breeding programmes for enhancing the rate of genetic progress. These modern techniques could be of great help for those traits, for which the conventional technologies have limitations in their use. Therefore, integration of molecular markers with conventional breeding technologies involving pedigree and phenotypic information are probable future breeding tools for genetic improvement of livestock and poultry.
Download or read book Molecular Plant Breeding written by Yunbi Xu and published by CABI. This book was released on 2010 with total page 756 pages. Available in PDF, EPUB and Kindle. Book excerpt: Recent advances in plant genomics and molecular biology have revolutionized our understanding of plant genetics, providing new opportunities for more efficient and controllable plant breeding. Successful techniques require a solid understanding of the underlying molecular biology as well as experience in applied plant breeding. Bridging the gap between developments in biotechnology and its applications in plant improvement, Molecular Plant Breeding provides an integrative overview of issues from basic theories to their applications to crop improvement including molecular marker technology, gene mapping, genetic transformation, quantitative genetics, and breeding methodology.
Download or read book Bovine Genomics written by James Womack and published by John Wiley & Sons. This book was released on 2012-06-26 with total page 285 pages. Available in PDF, EPUB and Kindle. Book excerpt: The genetic information being unlocked by advances in genomic and high throughput technologies is rapidly revolutionizing our understanding of developmental processes in bovine species. This information is allowing researchers unprecedented insight into the genetic basis of key traits. Bovine Genomics is the first book to bring together and synthesize the information learned through the bovine genome sequencing project and look at its practical application to cattle and dairy production. Bovine Genomics opens with foundational chapters on the domestication of cattle and traditional Mendelian genetics. Building on these chapters, coverage rapidly moves to quantitative genetics and the advances of whole genome technologies. Significant coverage is given to such topics as epigenetics, mapping quantitative trail loci, genome-wide association studies and genomic selection in cattle breeding. The book is a valuable synthesis of the field written by a global team of leading researchers. Providing wide-ranging coverage of the topic, Bovine Genomic, is an essential guide to the field. The basic and applied science will be of use to researchers, breeders, and advanced students.
Download or read book Advances in Breeding Techniques for Cereal Crops written by Frank Ordon and published by . This book was released on 2019 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Linear Models for the Prediction of Animal Breeding Values written by R. A. Mrode and published by Cab International. This book was released on 2014 with total page 343 pages. Available in PDF, EPUB and Kindle. Book excerpt: The prediction of producing desirable traits in offspring such as increased growth rate or superior meat, milk and wool production is a vital economic tool to the animal scientist. Summarizing the latest developments in genomics relating to animal breeding values and design of breeding programs, this new edition includes models of survival analysis, social interaction and sire and dam models, as well as advancements in the use of SNPs in the computation of genomic breeding values.
Download or read book Plant Breeding Past Present and Future written by John E. Bradshaw and published by Springer. This book was released on 2016-03-08 with total page 710 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book aims to help plant breeders by reviewing past achievements, currently successful practices, and emerging methods and techniques. Theoretical considerations are also presented to strike the right balance between being as simple as possible but as complex as necessary. The United Nations predicts that the global human population will continue rising to 9.0 billion by 2050. World food production will need to increase between 70-100 per cent in just 40 years. First generation bio-fuels are also using crops and cropland to produce energy rather than food. In addition, land area used for agriculture may remain static or even decrease as a result of degradation and climate change, despite more land being theoretically available, unless crops can be bred which tolerate associated abiotic stresses. Lastly, it is unlikely that steps can be taken to mitigate all of the climate change predicted to occur by 2050, and beyond, and hence adaptation of farming systems and crop production will be required to reduce predicted negative effects on yields that will occur without crop adaptation. Substantial progress will therefore be required in bridging the yield gap between what is currently achieved per unit of land and what should be possible in future, with the best farming methods and best storage and transportation of food, given the availability of suitably adapted cultivars, including adaptation to climate change. My book is divided into four parts: Part I is an historical introduction; Part II deals with the origin of genetic variation by mutation and recombination of DNA; Part III explains how the mating system of a crop species determines the genetic structure of its landraces; Part IV considers the three complementary options for future progress: use of sexual reproduction in further conventional breeding, base broadening and introgression; mutation breeding; and genetically modified crops.
Download or read book Advances Plant Phenotyping More Sustaihb written by Achim Walter and published by Burleigh Dodds Series in Agricultural Science. This book was released on 2022-03-22 with total page 420 pages. Available in PDF, EPUB and Kindle. Book excerpt: Plant phenotyping is an emerging technology that involves the quantitative analysis of structural and functional plant traits. However, it is widely recognised that phenotyping needs to match similar advances in genetics if it is to not create a bottleneck in plant breeding. Advances in plant phenotyping for more sustainable crop production reviews the wealth of research on advances in plant phenotyping to meet this challenge, such as the development of new technologies including hyperspectral sensors such as LIDAR, NIR/SWIR, as well as alternative delivery/carrier systems, such as ground-based proximal distance systems and UAVs. The book details the development of plant phenotyping as a technique to analyse crop roots and functionality, as well as its use in understanding and improving crop response to biotic and abiotic stresses.
Download or read book Introducing Sparsity Into Selection Index Methodology with Applications to High throughput Phenotyping and Genomic Prediction written by Marco Antonio Lopez Cruz and published by . This book was released on 2020 with total page 149 pages. Available in PDF, EPUB and Kindle. Book excerpt: Research in plant and animal breeding has been largely focused on the development of methods for a more efficient selection by altering the factors that affect genetic progress: selection intensity, selection accuracy, genetic variance, and length of the breeding cycle. Most of the breeding efforts have been primarily towards increasing selection accuracy and reducing the breeding cycle.Genomic selection has been successfully adopted by many public and private breeding organizations. Over years, these institutions have developed and accumulated large volumes of genomic data linked to phenotypes from multiple populations and multiple generations. This data abundance offers the opportunity to revolutionize genetic research. However, these data sets are also increasingly heterogeneous, with many subpopulations and multiple generations represented in the data. This translates into potentially heterogeneous allele frequencies and different LD patterns, thus leading to SNP-effect heterogeneity.Genomic selection methods were developed with reference to homogeneous populations in which SNP-effects are assumed constant across the whole population. These methods are not necessarily optimal for the contemporary available data sets for model training. Therefore, a first focus of this dissertation is on developing novel methods that can leverage the large-scale of modern data sets while coping with the heterogeneity and complexity of this type of data.In recent years, there have also been important advances in high-throughput phenotyping (HTP) technologies that can generate large volumes of data at multiple time-points of a crop. Examples of this include hyper-spectral imaging technologies that can capture the reflectance of electromagnetic power by crops at potentially thousands of wavelengths. The integration of HTP in genetic evaluations represents a great opportunity to further advance plant breeding; however, the high-dimensional nature of HTP data poses important challenges. Therefore, a second focus of this dissertation is on the development of a novel approach to efficiently incorporate HTP data for breeding values prediction.Thus, this dissertation aims to contribute novel methods that can improve the accuracy of genomic prediction by optimizing the use of large, potentially heterogeneous, genomic data sets and by enabling the integration of HTP data. We present a novel statistical approach that combines the standard selection index methodology with variable-selection methods commonly used in machine learning and statistics, and developed software to implement the method. Our approach offers solutions to both genomic selection with potentially highly heterogeneous genomic data sets, and the integration of HTP in genetic evaluations.
Download or read book Animal Breeding and Genetics written by Matthew L. Spangler and published by Springer Nature. This book was released on 2022-11-01 with total page 421 pages. Available in PDF, EPUB and Kindle. Book excerpt: This newly updated and revised volume of the Encyclopedia of Sustainability Science and Technology (ESST) details the role of Animal Breeding and Genetics in the sustainability of animal agriculture. The volume covers scientific principles and applications includes the current science used to advance cattle, poultry, swine,sheep, and equine populations, as well as the future role of techniques such as gene editing. International leaders in the field explain foundational concepts such as heritability, the covariance between relatives, statistical approaches to predicting the genetic merit of individuals, and the development and advancement of molecular techniques to elucidate changes in the DNA sequence that underly phenotypic variation. The use of genetic-based tools to improve animal agriculture and meet consumer demands across species is treated in detail. Readers will gain an understanding of how global livestock producers have implemented advanced genetic selection tools and used them to improve reproduction, production, efficiency, health, and sustainability. The interactions of genetics and production environments, and the genetic components of the complex interactions among animals are also discussed. The future of Animal Breeding and Genetics, including the challenges and opportunities that exist in feeding a growing world population, are addressed.
