Download or read book High Performance Computing for Drug Discovery and Biomedicine written by Alexander Heifetz and published by Springer Nature. This book was released on 2023-09-13 with total page 430 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume explores the application of high-performance computing (HPC) technologies to computational drug discovery (CDD) and biomedicine. The first section collects CDD approaches that, together with HPC, can revolutionize and automate drug discovery process, such as knowledge graphs, natural language processing (NLP), Bayesian optimization, automated virtual screening platforms, alchemical free energy workflows, fragment-molecular orbitals (FMO), HPC-adapted molecular dynamic simulation (MD-HPC), and the potential of cloud computing for drug discovery. The second section delves into computational algorithms and workflows for biomedicine, featuring an HPC framework to assess drug-induced arrhythmic risk, digital patient applications relevant to the clinic, virtual human simulations, cellular and whole-body blood flow modeling for stroke treatments, prediction of the femoral bone strength from CT data, and many more subjects. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary software and tools, step-by-step and readily reproducible modeling protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, High Performance Computing for Drug Discovery and Biomedicine allows a diverse audience, including computer scientists, computational and medicinal chemists, biologists, clinicians, pharmacologists and drug designers, to navigate the complex landscape of what is currently possible and to understand the challenges and future directions of HPC-based technologies.
Download or read book High Performance Computing in Biomedical Research written by Theo C. Pilkington and published by CRC Press. This book was released on 2020-09-10 with total page 558 pages. Available in PDF, EPUB and Kindle. Book excerpt: Leading researchers have contributed state-of-the-art chapters to this overview of high-performance computing in biomedical research. The book includes over 30 pages of color illustrations. Some of the important topics featured in the book include the following:
Download or read book Bioinformatics and Computational Biology in Drug Discovery and Development written by William T. Loging and published by Cambridge University Press. This book was released on 2016-03-17 with total page 255 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computational biology drives discovery through its use of high-throughput informatics approaches. This book provides a road map of the current drug development process and how computational biology approaches play a critical role across the entire drug discovery pipeline. Through the use of previously unpublished, real-life case studies the impact of a range of computational approaches are discussed at various phases of the pipeline. Additionally, a focus section provides innovative visualisation approaches, from both the drug discovery process as well as from other fields that utilise large datasets, recognising the increasing use of such technology. Serving the needs of early career and more experienced scientists, this up-to-date reference provides an essential introduction to the process and background of drug discovery, highlighting how computational researchers can contribute to that pipeline.
Download or read book Applications and Principles of Quantum Computing written by Khang, Alex and published by IGI Global. This book was released on 2024-01-31 with total page 510 pages. Available in PDF, EPUB and Kindle. Book excerpt: In a world driven by technology and data, classical computing faces limitations in tackling complex challenges like climate modeling and financial risk assessment. These barriers impede our aspirations to revolutionize industries and solve intricate real-world problems. To bridge this gap, we must embrace quantum computing. Edited by Alex Khang PH, Principles and Applications of Quantum Computing is a transformative solution to this challenge. It delves into the interdisciplinary realms of computer science, physics, and mathematics, unveiling the incredible potential of quantum computing, which outperforms supercomputers by 158 million times. This technology, rooted in quantum mechanics, offers solutions to global problems and opens new frontiers in AI, cybersecurity, finance, drug development, and more. By engaging with this book, you become a pioneer in the quantum revolution, contributing to reshaping the limits of what's achievable in our digital age.
Download or read book Towards Fully Automated High Performance Computing Drug Discovery written by and published by . This book was released on 2013 with total page 56 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Computational Drug Discovery and Design written by Mohini Gore and published by Springer Nature. This book was released on 2023-10-09 with total page 357 pages. Available in PDF, EPUB and Kindle. Book excerpt: This second edition provides new and updated methods and techniques for identification of drug target, binding sites prediction, high- throughput virtual screening, lead discovery and optimization, conformational sampling, prediction of pharmacokinetic properties using computer-based methodologies. Chapters also focus on the application of the latest artificial intelligence technologies for computer aided drug discovery. Written in the format of the highly successful Methods in Molecular Biology series, each chapter includes an introduction to the topic, lists necessary methods, includes tips on troubleshooting and known pitfalls, and step-by-step, readily reproducible protocols. Authoritative and cutting-edge, Computational Drug Discovery and Design, Second Edition aims to effectively utilize computational methodologies in discovery and design of novel drugs.
Download or read book Computational Drug Design written by D. C. Young and published by John Wiley & Sons. This book was released on 2009-01-28 with total page 344 pages. Available in PDF, EPUB and Kindle. Book excerpt: Helps you choose the right computational tools and techniques to meet your drug design goals Computational Drug Design covers all of the major computational drug design techniques in use today, focusing on the process that pharmaceutical chemists employ to design a new drug molecule. The discussions of which computational tools to use and when and how to use them are all based on typical pharmaceutical industry drug design processes. Following an introduction, the book is divided into three parts: Part One, The Drug Design Process, sets forth a variety of design processes suitable for a number of different drug development scenarios and drug targets. The author demonstrates how computational techniques are typically used during the design process, helping readers choose the best computational tools to meet their goals. Part Two, Computational Tools and Techniques, offers a series of chapters, each one dedicated to a single computational technique. Readers discover the strengths and weaknesses of each technique. Moreover, the book tabulates comparative accuracy studies, giving readers an unbiased comparison of all the available techniques. Part Three, Related Topics, addresses new, emerging, and complementary technologies, including bioinformatics, simulations at the cellular and organ level, synthesis route prediction, proteomics, and prodrug approaches. The book's accompanying CD-ROM, a special feature, offers graphics of the molecular structures and dynamic reactions discussed in the book as well as demos from computational drug design software companies. Computational Drug Design is ideal for both students and professionals in drug design, helping them choose and take full advantage of the best computational tools available. Note: CD-ROM/DVD and other supplementary materials are not included as part of eBook file.
Download or read book Relativity in Business written by Kushal Anjaria and published by Cambridge Scholars Publishing. This book was released on 2024-07-04 with total page 377 pages. Available in PDF, EPUB and Kindle. Book excerpt: ‘Relativity in Business: How Physics Shapes Management Science’ unveils the intriguing overlap between physics and management, providing a novel outlook on business strategy and organisational behaviour. It leverages concepts from motion, thermodynamics, quantum mechanics, and chaos theory, among others, to forge a groundbreaking framework for addressing business complexities. Aimed at managers, strategists, and academics, the book translates intricate physics into actionable insights for business challenges, such as optimising operations and leveraging chaos for organisational benefit. Through compelling case studies, it shows how applying physics principles can spur innovation and cultivate efficient, sustainable business practices. This text is a valuable tool for anyone interested in melding scientific principles with business strategy to enhance outcomes, making it a seminal read in the fusion of science and management.
Download or read book Chemoinformatics in Drug Discovery written by Tudor I. Oprea and published by John Wiley & Sons. This book was released on 2006-03-06 with total page 515 pages. Available in PDF, EPUB and Kindle. Book excerpt: This handbook provides the first-ever inside view of today's integrated approach to rational drug design. Chemoinformatics experts from large pharmaceutical companies, as well as from chemoinformatics service providers and from academia demonstrate what can be achieved today by harnessing the power of computational methods for the drug discovery process. With the user rather than the developer of chemoinformatics software in mind, this book describes the successful application of computational tools to real-life problems and presents solution strategies to commonly encountered problems. It shows how almost every step of the drug discovery pipeline can be optimized and accelerated by using chemoinformatics tools -- from the management of compound databases to targeted combinatorial synthesis, virtual screening and efficient hit-to-lead transition. An invaluable resource for drug developers and medicinal chemists in academia and industry.
Download or read book High Performance Computing and Networking written by Ch. Satyanarayana and published by Springer Nature. This book was released on 2022-03-22 with total page 652 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book comprises the proceedings of the 2nd International Conference on Computer Vision, High-Performance Computing, Smart Devices, and Networks (CHSN 2021). This book highlights the high-quality research articles in machine learning, computer vision, and networks. The content of this volume gives the reader an up-to-date picture of the state-of-the-art connection between computational intelligence, machine learning, and IoT. The papers included in this volume are peer-reviewed by experts in the related areas. The book will serve as a valuable reference resource for academics and researchers across the globe.
Download or read book High Performance Computing in Biomimetics written by Kamarul Arifin Ahmad and published by Springer Nature. This book was released on with total page 309 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Computer Applications in Drug Discovery and Development written by Puratchikody, A. and published by IGI Global. This book was released on 2018-11-23 with total page 332 pages. Available in PDF, EPUB and Kindle. Book excerpt: With more restrictions upon animal experimentations, pharmaceutical industries are currently focusing on a new generation of experiments and technologies that are considerably more efficient and less controversial. The integration of computational and experimental strategies has led to the identification and development of promising compounds. Computer Applications in Drug Discovery and Development is a pivotal reference source that provides innovative research on the application of computers for discovering and designing new drugs in modern molecular biology and medicinal chemistry. While highlighting topics such as chemical structure databases and dataset utilization, this publication delves into the current panorama of drug discovery, where high drug failure rates are a major concern and properly designed virtual screening strategies can be a time-saving, cost-effective, and productive alternative. This book is ideally designed for chemical engineers, pharmacists, molecular biologists, students, researchers, and academicians seeking current research on the unexplored avenues and future perspectives of drug design.
- Author : Cannataro, Mario
- Publisher : IGI Global
- Release : 2009-05-31
- ISBN : 1605663751
- Pages : 960 pages
Handbook of Research on Computational Grid Technologies for Life Sciences Biomedicine and Healthcare
Download or read book Handbook of Research on Computational Grid Technologies for Life Sciences Biomedicine and Healthcare written by Cannataro, Mario and published by IGI Global. This book was released on 2009-05-31 with total page 960 pages. Available in PDF, EPUB and Kindle. Book excerpt: "This book provides methodologies and developments of grid technologies applied in different fields of life sciences"--Provided by publisher.
Download or read book Collaborative Computational Technologies for Biomedical Research written by Sean Ekins and published by John Wiley & Sons. This book was released on 2011-08-04 with total page 462 pages. Available in PDF, EPUB and Kindle. Book excerpt: Methods, Processes, and Tools for Collaboration "The time has come to fundamentally rethink how we handle the building of knowledge in biomedical sciences today. This book describes how the computational sciences have transformed into being a key knowledge broker, able to integrate and operate across divergent data types." Bryn Williams-Jones, Associate Research Fellow, Pfizer The pharmaceutical industry utilizes an extended network of partner organizations in order to discover and develop new drugs, however there is currently little guidance for managing information and resources across collaborations. Featuring contributions from the leading experts in a range of industries, Collaborative Computational Technologies for Biomedical Research provides information that will help organizations make critical decisions about managing partnerships, including: Serving as a user manual for collaborations Tackling real problems from both human collaborative and data and informatics perspectives Providing case histories of biomedical collaborations and technology-specific chapters that balance technological depth with accessibility for the non-specialist reader A must-read for anyone working in the pharmaceuticals industry or academia, this book marks a major step towards widespread collaboration facilitated by computational technologies.
Download or read book Computational Biology for Drug Discovery and Characterization written by and published by . This book was released on 2009 with total page 3 pages. Available in PDF, EPUB and Kindle. Book excerpt: We proposed to determine the underpinnings of a high-throughput computational infrastructure that would support future efforts in therapeutics against biothreat pathogens. Existing modeling capabilities focus on pathogen detection, but extending such capabilities to high-throughput molecular docking would lead to a proactive method to guide the development of therapeutics. This project will focus on determining the feasibility of extending current databases to accommodate molecular docking. We will also examine the feasibility of massive parallelization of docking algorithms and the utility of docking libraries. Transferring this new technique to a high-performance computing (HPC) platform at LLNL would result in a unique capability not available elsewhere in government or industry. We have accomplished the proposed work defined in this LDRD FS study. (1) We successfully defined the feasibility of using three different small-molecule databases for high-throughput docking, the NCI diversity set, ZINC and the ACD. (2) We analyzed the accuracy and parallelization capabilities of six separate docking programs: DOCK, AutoDock, FlexX, Glide, and eHiTS. Each program is completely amenable to parallel execution. The fastest code was eHiTS, and Glide was the most accurate. (3) Customizing large libraries was cumbersome without the proper software, making the databases a bit difficult to tailor. The ZINC database has some prefiltered versions. (4) Scripts were created for quality and job control functions. Further development is needed for analysis and visualization needs. The successful conclusion of this project enables LLNL to have a high-throughput computational docking capability where we have evaluated the codes to specific docking problems and utilized LLNL's HPC for significant gains in performance. We have established a CRADA with an industrial partner (funded by the National Institutes of Health) that will fully utilize this technology for biodefense therapeutic design and development.
Download or read book Machine Learning for Drug Discovery written by Marcelo C. R. Melo and published by American Chemical Society. This book was released on 2022-03-11 with total page 218 pages. Available in PDF, EPUB and Kindle. Book excerpt: Machine Learning for Drug Discovery is designed to suit the needs of graduate students, advanced undergraduates, chemists or biologists otherwise new to this research domain with minimal previous exposure to Machine Learning (ML) methods, or computational scientists with minimal exposure to medicinal chemistry. The e-book covers basic algorithmic theory, data representation methods, and generative modeling at a high level. The authors spotlight antibiotic discovery as a case study in ML for drug development and discuss diverse applications in drug-likeness prediction, antimicrobial resistance, and areas for future inquiry. For a more dynamic learning experience, open-source code demonstrations in Python are included.
Download or read book Physico chemical and Computational Approaches to Drug Discovery written by Javier Luque and published by Royal Society of Chemistry. This book was released on 2012 with total page 443 pages. Available in PDF, EPUB and Kindle. Book excerpt: This title covers a wide range of topics relevant to the development of drugs. It provides a comprehensive description of the major methodological strategies available for rational drug discovery.