Download or read book Graph Based Mining on Weighted Directed Graphs for Subnetworks and Path Discovery written by Sijin Cherupilly Abdulkarim and published by . This book was released on 2011 with total page 200 pages. Available in PDF, EPUB and Kindle. Book excerpt: Subnetwork or path mining is an emerging data mining problem in many areas including scientific and commercial applications. Graph modeling is one of the effective ways in representing real world networks. Many natural and man-made systems are structured in the form of networks. Traditional machine learning and data mining approaches assume data as a collection of homogenous objects that are independent of each other whereas network data are potentially heterogeneous and interlinked. In this paper we propose a novel algorithm to find subnetworks and Maximal paths from a weighted, directed network represented as a graph. The main objective of this study is to find meaningful Maximal paths from a given network based on three key parameters: node weight, edge weight, and direction. This algorithm is an effective way to extract Maximal paths from a network modeled based on a user's interest. Also, the proposed algorithm allows the user to incorporate weights to the nodes and edges of a biological network. The performance of the proposed technique was tested using a Colorectal Cancer biological network. The subnetworks and paths obtained through our network mining algorithm from the biological network were scored based on their biological significance. The subnetworks and Maximal paths derived were verified using MetacoreTM as well as literature. The algorithm is developed into a tool where the user can input the node list and the edge list. The tool can also find out the upstream and downstream of a given entity (genes/proteins etc.) from the derived Maximal paths. The complexity of finding the algorithm is found to be O(nlogn) in the best case and O(n^2 logn) in the worst case.
Download or read book Graph Mining written by Deepayan Chakrabarti and published by Morgan & Claypool Publishers. This book was released on 2012 with total page 210 pages. Available in PDF, EPUB and Kindle. Book excerpt: What does the Web look like? How can we find patterns, communities, outliers, in a social network? Which are the most central nodes in a network? These are the questions that motivate this work. Networks and graphs appear in many diverse settings, for example in social networks, computer-communication networks (intrusion detection, traffic management), protein-protein interaction networks in biology, document-text bipartite graphs in text retrieval, person-account graphs in financial fraud detection, and others. In this work, first we list several surprising patterns that real graphs tend to follow. Then we give a detailed list of generators that try to mirror these patterns. Generators are important, because they can help with "what if" scenarios, extrapolations, and anonymization. Then we provide a list of powerful tools for graph analysis, and specifically spectral methods (Singular Value Decomposition (SVD)), tensors, and case studies like the famous "pageRank" algorithm and the "HITS" algorithm for ranking web search results. Finally, we conclude with a survey of tools and observations from related fields like sociology, which provide complementary viewpoints. Table of Contents: Introduction / Patterns in Static Graphs / Patterns in Evolving Graphs / Patterns in Weighted Graphs / Discussion: The Structure of Specific Graphs / Discussion: Power Laws and Deviations / Summary of Patterns / Graph Generators / Preferential Attachment and Variants / Incorporating Geographical Information / The RMat / Graph Generation by Kronecker Multiplication / Summary and Practitioner's Guide / SVD, Random Walks, and Tensors / Tensors / Community Detection / Influence/Virus Propagation and Immunization / Case Studies / Social Networks / Other Related Work / Conclusions
Download or read book Individual and Collective Graph Mining written by Danai Koutra and published by Springer Nature. This book was released on 2022-06-01 with total page 197 pages. Available in PDF, EPUB and Kindle. Book excerpt: Graphs naturally represent information ranging from links between web pages, to communication in email networks, to connections between neurons in our brains. These graphs often span billions of nodes and interactions between them. Within this deluge of interconnected data, how can we find the most important structures and summarize them? How can we efficiently visualize them? How can we detect anomalies that indicate critical events, such as an attack on a computer system, disease formation in the human brain, or the fall of a company? This book presents scalable, principled discovery algorithms that combine globality with locality to make sense of one or more graphs. In addition to fast algorithmic methodologies, we also contribute graph-theoretical ideas and models, and real-world applications in two main areas: Individual Graph Mining: We show how to interpretably summarize a single graph by identifying its important graph structures. We complement summarization with inference, which leverages information about few entities (obtained via summarization or other methods) and the network structure to efficiently and effectively learn information about the unknown entities. Collective Graph Mining: We extend the idea of individual-graph summarization to time-evolving graphs, and show how to scalably discover temporal patterns. Apart from summarization, we claim that graph similarity is often the underlying problem in a host of applications where multiple graphs occur (e.g., temporal anomaly detection, discovery of behavioral patterns), and we present principled, scalable algorithms for aligning networks and measuring their similarity. The methods that we present in this book leverage techniques from diverse areas, such as matrix algebra, graph theory, optimization, information theory, machine learning, finance, and social science, to solve real-world problems. We present applications of our exploration algorithms to massive datasets, including a Web graph of 6.6 billion edges, a Twitter graph of 1.8 billion edges, brain graphs with up to 90 million edges, collaboration, peer-to-peer networks, browser logs, all spanning millions of users and interactions.
Download or read book Text Mining for Information Professionals written by Manika Lamba and published by Springer Nature. This book was released on 2022-04-21 with total page 364 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book focuses on a basic theoretical framework dealing with the problems, solutions, and applications of text mining and its various facets in a very practical form of case studies, use cases, and stories. The book contains 11 chapters with 14 case studies showing 8 different text mining and visualization approaches, and 17 stories. In addition, both a website and a Github account are also maintained for the book. They contain the code, data, and notebooks for the case studies; a summary of all the stories shared by the librarians/faculty; and hyperlinks to open an interactive virtual RStudio/Jupyter Notebook environment. The interactive virtual environment runs case studies based on the R programming language for hands-on practice in the cloud without installing any software. From understanding different types and forms of data to case studies showing the application of each text mining approaches on data retrieved from various resources, this book is a must-read for all library professionals interested in text mining and its application in libraries. Additionally, this book will also be helpful to archivists, digital curators, or any other humanities and social science professionals who want to understand the basic theory behind text data, text mining, and various tools and techniques available to solve and visualize their research problems.
Download or read book Networks in Cell Biology written by Mark Buchanan and published by Cambridge University Press. This book was released on 2010-05-13 with total page 282 pages. Available in PDF, EPUB and Kindle. Book excerpt: Key introductory text for graduate students and researchers in physics, biology and biochemistry.
Download or read book Advances in Knowledge Discovery and Data Mining written by Takashi Washio and published by Springer. This book was released on 2008-05-11 with total page 1126 pages. Available in PDF, EPUB and Kindle. Book excerpt: ThePaci?c-AsiaConferenceonKnowledgeDiscoveryandDataMining(PAKDD) has been held every year since 1997. PAKDD 2008, the 12th in the series, was heldatOsaka,JapanduringMay20–23,2008.PAKDDisaleadinginternational conference in the area of data mining. It provides an international forum for - searchers and industry practitioners to share their new ideas, original research results, and practical development experiences from all KDD-related areas - cluding data mining, data warehousing, machine learning, databases, statistics, knowledge acquisition, automatic scienti?c discovery, data visualization, causal induction, and knowledge-based systems. This year we received a total of 312 research papers from 34 countries and regions in Asia, Australia, North America, South America, Europe, and Africa. Every submitted paper was rigorously reviewed by two or three reviewers, d- cussed by the reviewers under the supervision of an Area Chair, and judged by the Program Committee Chairs. When there was a disagreement, the Area Chair and/or the Program Committee Chairs provided an additional review. Thus, many submissions were reviewed by four experts. The Program Comm- tee members were deeply involved in a highly selective process. As a result, only approximately11.9%ofthe312submissionswereacceptedaslongpapers,12.8% of them were accepted as regular papers, and 11.5% of them were accepted as short papers.
Download or read book Digraphs written by Jorgen Bang-Jensen and published by Springer Science & Business Media. This book was released on 2013-06-29 with total page 769 pages. Available in PDF, EPUB and Kindle. Book excerpt: The study of directed graphs (digraphs) has developed enormously over recent decades, yet the results are rather scattered across the journal literature. This is the first book to present a unified and comprehensive survey of the subject. In addition to covering the theoretical aspects, the authors discuss a large number of applications and their generalizations to topics such as the traveling salesman problem, project scheduling, genetics, network connectivity, and sparse matrices. Numerous exercises are included. For all graduate students, researchers and professionals interested in graph theory and its applications, this book will be essential reading.
Download or read book Graph Theory and Complex Networks written by Maarten van Steen and published by Maarten Van Steen. This book was released on 2010 with total page 285 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book aims to explain the basics of graph theory that are needed at an introductory level for students in computer or information sciences. To motivate students and to show that even these basic notions can be extremely useful, the book also aims to provide an introduction to the modern field of network science. Mathematics is often unnecessarily difficult for students, at times even intimidating. For this reason, explicit attention is paid in the first chapters to mathematical notations and proof techniques, emphasizing that the notations form the biggest obstacle, not the mathematical concepts themselves. This approach allows to gradually prepare students for using tools that are necessary to put graph theory to work: complex networks. In the second part of the book the student learns about random networks, small worlds, the structure of the Internet and the Web, peer-to-peer systems, and social networks. Again, everything is discussed at an elementary level, but such that in the end students indeed have the feeling that they: 1.Have learned how to read and understand the basic mathematics related to graph theory. 2.Understand how basic graph theory can be applied to optimization problems such as routing in communication networks. 3.Know a bit more about this sometimes mystical field of small worlds and random networks. There is an accompanying web site www.distributed-systems.net/gtcn from where supplementary material can be obtained, including exercises, Mathematica notebooks, data for analyzing graphs, and generators for various complex networks.
Download or read book Managing and Mining Graph Data written by Charu C. Aggarwal and published by Springer Science & Business Media. This book was released on 2010-02-02 with total page 623 pages. Available in PDF, EPUB and Kindle. Book excerpt: Managing and Mining Graph Data is a comprehensive survey book in graph management and mining. It contains extensive surveys on a variety of important graph topics such as graph languages, indexing, clustering, data generation, pattern mining, classification, keyword search, pattern matching, and privacy. It also studies a number of domain-specific scenarios such as stream mining, web graphs, social networks, chemical and biological data. The chapters are written by well known researchers in the field, and provide a broad perspective of the area. This is the first comprehensive survey book in the emerging topic of graph data processing. Managing and Mining Graph Data is designed for a varied audience composed of professors, researchers and practitioners in industry. This volume is also suitable as a reference book for advanced-level database students in computer science and engineering.
Download or read book Network Science written by Albert-László Barabási and published by Cambridge University Press. This book was released on 2016-07-21 with total page 477 pages. Available in PDF, EPUB and Kindle. Book excerpt: Illustrated throughout in full colour, this pioneering text is the only book you need for an introduction to network science.
Download or read book Physics in Molecular Biology written by Kim Sneppen and published by Cambridge University Press. This book was released on 2005-08-25 with total page 328 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book, first published in 2005, is a discussion for advanced physics students of how to use physics to model biological systems.
Download or read book Mining Graph Data written by Diane J. Cook and published by John Wiley & Sons. This book was released on 2006-12-18 with total page 501 pages. Available in PDF, EPUB and Kindle. Book excerpt: This text takes a focused and comprehensive look at mining data represented as a graph, with the latest findings and applications in both theory and practice provided. Even if you have minimal background in analyzing graph data, with this book you’ll be able to represent data as graphs, extract patterns and concepts from the data, and apply the methodologies presented in the text to real datasets. There is a misprint with the link to the accompanying Web page for this book. For those readers who would like to experiment with the techniques found in this book or test their own ideas on graph data, the Web page for the book should be http://www.eecs.wsu.edu/MGD.
Download or read book Ant Colony Optimization written by Marco Dorigo and published by MIT Press. This book was released on 2004-06-04 with total page 324 pages. Available in PDF, EPUB and Kindle. Book excerpt: An overview of the rapidly growing field of ant colony optimization that describes theoretical findings, the major algorithms, and current applications. The complex social behaviors of ants have been much studied by science, and computer scientists are now finding that these behavior patterns can provide models for solving difficult combinatorial optimization problems. The attempt to develop algorithms inspired by one aspect of ant behavior, the ability to find what computer scientists would call shortest paths, has become the field of ant colony optimization (ACO), the most successful and widely recognized algorithmic technique based on ant behavior. This book presents an overview of this rapidly growing field, from its theoretical inception to practical applications, including descriptions of many available ACO algorithms and their uses. The book first describes the translation of observed ant behavior into working optimization algorithms. The ant colony metaheuristic is then introduced and viewed in the general context of combinatorial optimization. This is followed by a detailed description and guide to all major ACO algorithms and a report on current theoretical findings. The book surveys ACO applications now in use, including routing, assignment, scheduling, subset, machine learning, and bioinformatics problems. AntNet, an ACO algorithm designed for the network routing problem, is described in detail. The authors conclude by summarizing the progress in the field and outlining future research directions. Each chapter ends with bibliographic material, bullet points setting out important ideas covered in the chapter, and exercises. Ant Colony Optimization will be of interest to academic and industry researchers, graduate students, and practitioners who wish to learn how to implement ACO algorithms.
Download or read book Fundamentals of Brain Network Analysis written by Alex Fornito and published by Academic Press. This book was released on 2016-03-04 with total page 496 pages. Available in PDF, EPUB and Kindle. Book excerpt: Fundamentals of Brain Network Analysis is a comprehensive and accessible introduction to methods for unraveling the extraordinary complexity of neuronal connectivity. From the perspective of graph theory and network science, this book introduces, motivates and explains techniques for modeling brain networks as graphs of nodes connected by edges, and covers a diverse array of measures for quantifying their topological and spatial organization. It builds intuition for key concepts and methods by illustrating how they can be practically applied in diverse areas of neuroscience, ranging from the analysis of synaptic networks in the nematode worm to the characterization of large-scale human brain networks constructed with magnetic resonance imaging. This text is ideally suited to neuroscientists wanting to develop expertise in the rapidly developing field of neural connectomics, and to physical and computational scientists wanting to understand how these quantitative methods can be used to understand brain organization. - Winner of the 2017 PROSE Award in Biomedicine & Neuroscience and the 2017 British Medical Association (BMA) Award in Neurology - Extensively illustrated throughout by graphical representations of key mathematical concepts and their practical applications to analyses of nervous systems - Comprehensively covers graph theoretical analyses of structural and functional brain networks, from microscopic to macroscopic scales, using examples based on a wide variety of experimental methods in neuroscience - Designed to inform and empower scientists at all levels of experience, and from any specialist background, wanting to use modern methods of network science to understand the organization of the brain
Download or read book Mining Heterogeneous Information Networks written by Yizhou Sun and published by Morgan & Claypool Publishers. This book was released on 2012 with total page 162 pages. Available in PDF, EPUB and Kindle. Book excerpt: Investigates the principles and methodologies of mining heterogeneous information networks. Departing from many existing network models that view interconnected data as homogeneous graphs or networks, the semi-structured heterogeneous information network model leverages the rich semantics of typed nodes and links in a network and uncovers surprisingly rich knowledge from the network.
Download or read book Mining the Web written by Soumen Chakrabarti and published by Morgan Kaufmann. This book was released on 2002-10-09 with total page 366 pages. Available in PDF, EPUB and Kindle. Book excerpt: The definitive book on mining the Web from the preeminent authority.
Download or read book Quantitative Analysis of Ecological Networks written by Mark R. T. Dale and published by Cambridge University Press. This book was released on 2021-04-15 with total page 250 pages. Available in PDF, EPUB and Kindle. Book excerpt: Network thinking and network analysis are rapidly expanding features of ecological research. Network analysis of ecological systems include representations and modelling of the interactions in an ecosystem, in which species or factors are joined by pairwise connections. This book provides an overview of ecological network analysis including generating processes, the relationship between structure and dynamic function, and statistics and models for these networks. Starting with a general introduction to the composition of networks and their characteristics, it includes details on such topics as measures of network complexity, applications of spectral graph theory, how best to include indirect species interactions, and multilayer, multiplex and multilevel networks. Graduate students and researchers who want to develop and understand ecological networks in their research will find this volume inspiring and helpful. Detailed guidance to those already working in network ecology but looking for advice is also included.
