Download or read book Game Changer Next Generation Sequencing and Its Impact on Food Microbiology written by Jennifer Ronholm and published by Frontiers Media SA. This book was released on 2018-04-26 with total page 302 pages. Available in PDF, EPUB and Kindle. Book excerpt: Advances in next-generation sequencing technologies (NGS) are revolutionizing the field of food microbiology. Microbial whole genome sequencing (WGS) can provide identification, characterization, and subtyping of pathogens for epidemiological investigations at a level of precision previously not possible. This allows for connections and source attribution to be inferred between related isolates that may be overlooked by traditional techniques. The archiving and global sharing of genome sequences allow for retrospective analysis of virulence genes, antimicrobial resistance markers, mobile genetic elements and other novel genes. The advent of high-throughput 16S rRNA amplicon sequencing, in combination with the advantages offered by massively parallel second-generation sequencing for metagenomics, enable intensive studies on the microbiomes of food products and the impact of foods on the human microbiome. These studies may one day lead to the development of reliable culture-independent methods for food monitoring and surveillance. Similarly, RNA-seq has provided insights into the transcriptomes and hence the behaviour of bacterial pathogens in food, food processing environments, and in interaction with the host at a resolution previously not achieved through the use of microarrays and/or RT-PCR. The vast un-tapped potential applications of NGS along with its rapidly declining costs, give this technology the ability to contribute significantly to consumer protection, global trade facilitation, and increased food safety and security. Despite the rapid advances, challenges remain. How will NGS data be incorporated into our existing global food safety infrastructure? How will massive NGS data be stored and shared globally? What bioinformatics solutions will be used to analyse and optimise these large data sets? This Research Topic discusses recent advances in the field of food microbiology made possible through the use of NGS.

Download or read book Game Changer Next Generation Sequencing and Its Impact on Food Microbiology written by and published by . This book was released on 2018 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Advances in next-generation sequencing technologies (NGS) are revolutionizing the field of food microbiology. Microbial whole genome sequencing (WGS) can provide identification, characterization, and subtyping of pathogens for epidemiological investigations at a level of precision previously not possible. This allows for connections and source attribution to be inferred between related isolates that may be overlooked by traditional techniques. The archiving and global sharing of genome sequences allow for retrospective analysis of virulence genes, antimicrobial resistance markers, mobile genetic elements and other novel genes. The advent of high-throughput 16S rRNA amplicon sequencing, in combination with the advantages offered by massively parallel second-generation sequencing for metagenomics, enable intensive studies on the microbiomes of food products and the impact of foods on the human microbiome. These studies may one day lead to the development of reliable culture-independent methods for food monitoring and surveillance. Similarly, RNA-seq has provided insights into the transcriptomes and hence the behaviour of bacterial pathogens in food, food processing environments, and in interaction with the host at a resolution previously not achieved through the use of microarrays and/or RT-PCR. The vast un-tapped potential applications of NGS along with its rapidly declining costs, give this technology the ability to contribute significantly to consumer protection, global trade facilitation, and increased food safety and security. Despite the rapid advances, challenges remain. How will NGS data be incorporated into our existing global food safety infrastructure? How will massive NGS data be stored and shared globally? What bioinformatics solutions will be used to analyse and optimise these large data sets? This Research Topic discusses recent advances in the field of food microbiology made possible through the use of NGS.

Download or read book Global Food Safety written by Saher Islam and published by CRC Press. This book was released on 2023-01-27 with total page 373 pages. Available in PDF, EPUB and Kindle. Book excerpt: Foodborne microbial outbreaks are a serious food safety and public health concern worldwide. One of the most challenging issues in food safety is the identification and characterization of foodborne microbial communities, which is a core objective of research by food scientists and food microbiologists. This book reviews the molecular advances in food science related to the safety and quality of food along with recent diagnostic tools for the detection of emerging pathogens based on the food commodities. It presents a wide selection of methods for the identification and characterization of foodborne infectious agents. This book provides an overview of foodborne pathogens, diseases, and outbreaks and then proceeds to delve into techniques for characterizing foodborne pathogens using molecular approaches. It reviews state-of-the-art methods for detecting and tracing foodborne pathogens using next-generation sequencing and whole-genome sequencing for controlling foodborne illnesses as well as the application of microorganisms in food production for preventing foodborne illnesses. The book ends with an overview of management systems and analytical tools for public health protection from foodborne illnesses.

Download or read book Food Microbial and Molecular Biology written by Saher Islam and published by CRC Press. This book was released on 2023-09-08 with total page 475 pages. Available in PDF, EPUB and Kindle. Book excerpt: The ever-increasing globalization of the food industry demands new interventions and prevention technologies to improve the safety and quality of food. This multidisciplinary new book presents advanced systems for identifying, analyzing, tracking, and monitoring microbial contaminants in food. Key features: • Highlights emerging and re-emerging foodborne microorganisms and their virulence characteristics • Includes recent approaches for food quality assurance and risk management • Describes the practicality of molecular biology and microbial technologies for effectual control of foodborne infections • Presents a detailed overview of the utilization of recent molecular techniques in food microbiology With expert contributions from experienced academics involved in food microbiology and molecular biology research, this book offers indispensable guidance and a contemporary update of the latest developments in food microbial and molecular biology.

Download or read book Sequencing Technologies in Microbial Food Safety and Quality written by Devarajan Thangardurai and published by CRC Press. This book was released on 2021-04-14 with total page 500 pages. Available in PDF, EPUB and Kindle. Book excerpt: Molecular landscape for food safety analysis is rapidly revolutionizing because of high resolution and value added resulting analysis of next-generation sequencing (NGS) approaches. These modern sequencing technologies drive worldwide advancements in food safety and quality. Sequencing Technologies in Microbial Food Safety and Quality reviews several practices in that NGS contributes to foodborne pathogens functional characterization, management and control. This book focuses on potential uses of sequencing technologies in microbial food safety and quality and highlights present challenges in the food industry. Key Features: Application of whole genome sequencing technologies in disease diagnostics, surveillance, transmission, and outbreak investigation in food sector Impact of sequencing tools in the area of food microbiology Recent advances in genomic DNA sequencing of microbial species from single cells Microbial bioinformatics resources for food microbiology High-throughput insertion tracking by deep sequencing for the analysis of food pathogens This book includes contributions from experts who have manipulated sequencing tools in relation to microbial food safety and quality. Presenting comprehensive details about NGS approaches in food science, this book is an updated and reliable reference for food scientists, nutritionists, food product investigators to study and implement the sequencing technologies for developing quality and safe food. This book would also serve as informative resource for food industry officials, government researchers, food science or food nutrition students who seek comprehensive knowledge about the role of emerging sequencing technologies in revolutionizing the food industry.

Download or read book Foodomics written by Jorge Barros-Velázquez and published by Royal Society of Chemistry. This book was released on 2021-03-23 with total page 515 pages. Available in PDF, EPUB and Kindle. Book excerpt: Presenting an up-to-date review of the state-of-the-art and main applications of omics technologies to current hot topics in food sciences, this book is divided into four convenient sections. The first section represents an introduction to the development of foodomics and will provide a general overview of DNA-based and protein-based methods. The second section is focused on the main applications of omics to food safety issues, such as chemical hazards, foodborne pathogens, phages, food authentication or GMO detection. The third section is focused on specific food groups and how omics have revolutionized the investigation of dairy and meat products, seafood, agricultural and fermented food products. Finally, the fourth section is devoted to the link between foodomics and health: hot topics such as nutrimetabolomics, food allergy or probiotics are reviewed here. The book brings together work from top international scientists to produce the most significant academic book for some years on omics and food for a broad audience. It presents unique features not covered so far by other books, such as a detailed description of different strategies and applications of omics techniques to many food sectors and provides a welcome addition to the cutting-edge literature in this area for researchers and professionals in food science and food chemistry.

Download or read book Zoonoses Infections Affecting Humans and Animals written by Andreas Sing and published by Springer Nature. This book was released on 2023-10-09 with total page 1713 pages. Available in PDF, EPUB and Kindle. Book excerpt: This second fully revised and extended edition of “Zoonoses - Infections Affecting Humans and Animals” covers the most important pathogens impacting both human and animal public health and debates current developments in this interdisciplinary field from a One Health perspective. Following a "setting" approach, the individual chapters each review zoonoses occurring in a specific group of animals, such as production animals, pets or wildlife, or in a defined ecosystem. A focus is put on zoonoses emerging along the food chain and on antibiotic resistance as an increasing challenge in infectious disease management. Special interest chapters debate non-resolved and currently hotly debated zoonoses, foremost COVID-19, influenza, Crohn/paratuberculosis and chronic botulism, also taking into account the economic and ecological aspects of zoonotic disease outbreaks. This second edition includes brand-new chapters on emerging pathogens such as SARS-CoV-2, chlamydia and helminths, it reviews historic zoonoses, provides additional insights into pathogens of reptiles and highlights significant neglected tropical diseases. This reference work is a must-read for researchers, health professionals and students in Microbiology and Veterinary Medicine. The book’s ambition to spread knowledge on zoonoses and on strategies on how to tackle them complies with the United Nations Sustainable Goals, in particular Goal 3 – Good Health and Well-Being.

Download or read book Campylobacter in Poultry Physiology Genetics and Detection Methods written by Steven C. Ricke and published by Frontiers Media SA. This book was released on 2022-11-29 with total page 273 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Detection and Enumeration of Bacteria Yeast Viruses and Protozoan in Foods and Freshwater written by Marciane Magnani and published by Springer Nature. This book was released on 2021-12-05 with total page 246 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume details methods and procedures used to detect and enumerate bacteria in food. Chapters guide readers through food and beverage matrices, techniques used to enumerate bacteria, mixed bacterial strains (naturally present or inoculated), yeast, viruses, protozoan in distinct food matrices, and freshwater. Authoritative and cutting-edge, Detection and Enumeration of Bacteria, Yeast, Viruses, and Protozoan in Foods and Freshwater aims to provide a basic understanding on detection and enumeration of microorganisms in foods.

Download or read book Trends in Food Safety and Protection written by V Ravishankar Rai and published by CRC Press. This book was released on 2017-09-18 with total page 323 pages. Available in PDF, EPUB and Kindle. Book excerpt: Trends in Food Safety and Protection explores the recent developments and ongoing research in the field of food safety and protection. The book covers improvements in the existing techniques and implementation of novel analytical methods for detecting and characterizing foodborne pathogens.

Download or read book Ettinger s Textbook of Veterinary Internal Medicine eBook written by Stephen J. Ettinger and published by Elsevier Health Sciences. This book was released on 2024-01-03 with total page 2698 pages. Available in PDF, EPUB and Kindle. Book excerpt: Now Ettinger’s trusted, all-in-one veterinary resource is even better! Trusted by small animal veterinarians for more than 45 years, Ettinger’s Textbook of Veterinary Internal Medicine adds new content on the field’s leading issues and trends to its unmatched, “gold standard coverage of the diagnosis and treatment of medical problems of dogs and cats.

Download or read book Bioprospecting of Microbial Diversity written by Pradeep Verma and published by Elsevier. This book was released on 2022-02-01 with total page 566 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bioprospecting of Microbial Diversity: Challenges and Applications in Biochemical Industry, Agriculture and Environment Protection gives a detailed insight into the utilization of microorganisms or microorganism-based bioactive compounds for the development of sustainable approaches, covering recent advances and challenges in the production and recovery of bioactive compounds such as enzymes, biopesticides, biofertilizers, biosensors, therapeutics, nutraceutical and pharmaceutical products. The challenges associated with the different approaches of microbial bioprospecting along with possible solutions to overcome these limitations are addressed. Further, the application of microbe-based products in the area of environmental pollution control and developing greener technologies are discussed. Providing valuable insight into the basics of microbial prospecting, the book covers established knowledge as well as genomic-based technological advancements to offer a better understanding of its application to various industries, promoting the commercialization of microbial-derived bioactive compounds and their application in biochemical industries, agriculture, and environmental protection studies. Describes the advanced techniques available for microbial bioprospecting for large-scale industrial production of bioactive compounds Presents recent advances and challenges for the application of microbe-based products in agriculture and environment pollution control Provides knowledge of microbial production of bioenergy and high-value compounds such as nutraceuticals and pharmaceuticals

Download or read book Metagenomics for Microbiology written by Jacques Izard and published by Academic Press. This book was released on 2014-11-07 with total page 188 pages. Available in PDF, EPUB and Kindle. Book excerpt: Concisely discussing the application of high throughput analysis to move forward our understanding of microbial principles, Metagenomics for Microbiology provides a solid base for the design and analysis of omics studies for the characterization of microbial consortia. The intended audience includes clinical and environmental microbiologists, molecular biologists, infectious disease experts, statisticians, biostatisticians, and public health scientists. This book focuses on the technological underpinnings of metagenomic approaches and their conceptual and practical applications. With the next-generation genomic sequencing revolution increasingly permitting researchers to decipher the coding information of the microbes living with us, we now have a unique capacity to compare multiple sites within individuals and at higher resolution and greater throughput than hitherto possible. The recent articulation of this paradigm points to unique possibilities for investigation of our dynamic relationship with these cellular communities, and excitingly the probing of their therapeutic potential in disease prevention or treatment of the future. Expertly describes the latest metagenomic methodologies and best-practices, from sample collection to data analysis for taxonomic, whole shotgun metagenomic, and metatranscriptomic studies Includes clear-headed pointers and quick starts to direct research efforts and increase study efficacy, eschewing ponderous prose Presented topics include sample collection and preparation, data generation and quality control, third generation sequencing, advances in computational analyses of shotgun metagenomic sequence data, taxonomic profiling of shotgun data, hypothesis testing, and mathematical and computational analysis of longitudinal data and time series. Past-examples and prospects are provided to contextualize the applications.

Download or read book Integration of NGS in clinical and public health microbiology workflows applications compliance quality considerations written by Varvara K. Kozyreva and published by Frontiers Media SA. This book was released on 2024-02-05 with total page 147 pages. Available in PDF, EPUB and Kindle. Book excerpt: The expansion of NGS implementation in clinical and public health practice accelerated drastically during the SARS-CoV-2 pandemic, where NGS has been playing a vital role in tracking dangerous strains of the virus. NGS applications not only influenced public health decision-making but also have been crossing into the clinical field with individual patients’ results being potentially available to the physicians. Hence, the topic of implementation of NGS methods in clinical and public health microbiology, its challenges and special considerations, is as timely as ever. The use of Next Generation Sequencing (NGS) in clinical and public health microbiology laboratories has been steadily expanding in the past decade. However, this progress has been held back by multiple logistical challenges, like the absence of regulatory compliance framework, lack of clear quality guidelines, the need for standardization and interoperability between laboratories, as well as cost and turn-around-time limitations.

Download or read book Improving Food Safety Through a One Health Approach written by Institute of Medicine and published by National Academies Press. This book was released on 2012-09-10 with total page 418 pages. Available in PDF, EPUB and Kindle. Book excerpt: Globalization of the food supply has created conditions favorable for the emergence, reemergence, and spread of food-borne pathogens-compounding the challenge of anticipating, detecting, and effectively responding to food-borne threats to health. In the United States, food-borne agents affect 1 out of 6 individuals and cause approximately 48 million illnesses, 128,000 hospitalizations, and 3,000 deaths each year. This figure likely represents just the tip of the iceberg, because it fails to account for the broad array of food-borne illnesses or for their wide-ranging repercussions for consumers, government, and the food industry-both domestically and internationally. A One Health approach to food safety may hold the promise of harnessing and integrating the expertise and resources from across the spectrum of multiple health domains including the human and veterinary medical and plant pathology communities with those of the wildlife and aquatic health and ecology communities. The IOM's Forum on Microbial Threats hosted a public workshop on December 13 and 14, 2011 that examined issues critical to the protection of the nation's food supply. The workshop explored existing knowledge and unanswered questions on the nature and extent of food-borne threats to health. Participants discussed the globalization of the U.S. food supply and the burden of illness associated with foodborne threats to health; considered the spectrum of food-borne threats as well as illustrative case studies; reviewed existing research, policies, and practices to prevent and mitigate foodborne threats; and, identified opportunities to reduce future threats to the nation's food supply through the use of a "One Health" approach to food safety. Improving Food Safety Through a One Health Approach: Workshop Summary covers the events of the workshop and explains the recommendations for future related workshops.

Download or read book Predictive Microbiology in Foods written by Fernando Perez-Rodriguez and published by Springer Science & Business Media. This book was released on 2012-12-12 with total page 132 pages. Available in PDF, EPUB and Kindle. Book excerpt: Predictive microbiology is a recent area within food microbiology, which studies the responses of microorganisms in foods to environmental factors (e.g., temperature, pH) through mathematical functions. These functions enable scientists to predict the behavior of pathogens and spoilage microorganisms under different combinations of factors. The main goal of predictive models in food science is to assure both food safety and food quality. Predictive models in foods have developed significantly in the last 20 years due to the emergence of powerful computational resources and sophisticated statistical packages. This book presents the concepts, models, most significant advances, and future trends in predictive microbiology. It will discuss the history and basic concepts of predictive microbiology. The most frequently used models will be explained, and the most significant software and databases (e.g., Combase, Sym’Previus) will be reviewed. Quantitative Risk Assessment, which uses predictive modeling to account for the transmission of foodborne pathogens across the food chain, will also be covered. ​

Download or read book Strategies for Effective Improvements to the BioWatch System written by National Academies of Sciences, Engineering, and Medicine and published by National Academies Press. This book was released on 2018-05-17 with total page 223 pages. Available in PDF, EPUB and Kindle. Book excerpt: BioWatch is the Department of Homeland Security's (DHS's) system for detecting an aerosolized biological attack using collectors that are positioned strategically across the country to continuously monitor the air for biological threats. As currently deployed, BioWatch collectors draw air through filters that field technicians collect daily and transport to laboratories, where professional technicians analyze the material collected on the filter for evidence of biological threats. As part of the BioWatch program's efforts to enhance its effectiveness and capabilities, particularly with regard to detecting biological threats in challenging indoor environments, DHS requested the National Academies of Sciences, Engineering, and Medicine hold a workshop to explore alternative and effective biodetection systems for aerosolized biological agents that would meet BioWatch's technical and operational requirements, integrate into the existing system architecture and public health infrastructure, and be deployable by 2027. This publication summarizes the presentations and discussions from the workshop.