Download or read book Uncultivated Microorganisms written by Slava S. Epstein and published by Springer Science & Business Media. This book was released on 2009-09-01 with total page 215 pages. Available in PDF, EPUB and Kindle. Book excerpt: In 1898, an Austrian microbiologist Heinrich Winterberg made a curious observation: the number of microbial cells in his samples did not match the number of colonies formed on nutrient media (Winterberg 1898). About a decade later, J. Amann qu- tified this mismatch, which turned out to be surprisingly large, with non-growing cells outnumbering the cultivable ones almost 150 times (Amann 1911). These papers signify some of the earliest steps towards the discovery of an important phenomenon known today as the Great Plate Count Anomaly (Staley and Konopka 1985). Note how early in the history of microbiology these steps were taken. Detecting the Anomaly almost certainly required the Plate. If so, then the period from 1881 to 1887, the years when Robert Koch and Petri introduced their key inventions (Koch 1881; Petri 1887), sets the earliest boundary for the discovery, which is remarkably close to the 1898 observations by H. Winterberg. Celebrating its 111th anniversary, the Great Plate Count Anomaly today is arguably the oldest unresolved microbiological phenomenon. In the years to follow, the Anomaly was repeatedly confirmed by all microb- logists who cared to compare the cell count in the inoculum to the colony count in the Petri dish (cf., Cholodny 1929; Butkevich 1932; Butkevich and Butkevich 1936). By mid-century, the remarkable difference between the two counts became a universally recognized phenomenon, acknowledged by several classics of the time (Waksman and Hotchkiss 1937; ZoBell 1946; Jannasch and Jones 1959).
Download or read book The Chemistry of Microbiomes written by National Academies of Sciences, Engineering, and Medicine and published by National Academies Press. This book was released on 2017-07-19 with total page 133 pages. Available in PDF, EPUB and Kindle. Book excerpt: The 21st century has witnessed a complete revolution in the understanding and description of bacteria in eco- systems and microbial assemblages, and how they are regulated by complex interactions among microbes, hosts, and environments. The human organism is no longer considered a monolithic assembly of tissues, but is instead a true ecosystem composed of human cells, bacteria, fungi, algae, and viruses. As such, humans are not unlike other complex ecosystems containing microbial assemblages observed in the marine and earth environments. They all share a basic functional principle: Chemical communication is the universal language that allows such groups to properly function together. These chemical networks regulate interactions like metabolic exchange, antibiosis and symbiosis, and communication. The National Academies of Sciences, Engineering, and Medicine's Chemical Sciences Roundtable organized a series of four seminars in the autumn of 2016 to explore the current advances, opportunities, and challenges toward unveiling this "chemical dark matter" and its role in the regulation and function of different ecosystems. The first three focused on specific ecosystemsâ€"earth, marine, and humanâ€"and the last on all microbiome systems. This publication summarizes the presentations and discussions from the seminars.
Download or read book Size Limits of Very Small Microorganisms written by National Research Council and published by National Academies Press. This book was released on 1999-09-13 with total page 171 pages. Available in PDF, EPUB and Kindle. Book excerpt: How small can a free-living organism be? On the surface, this question is straightforward-in principle, the smallest cells can be identified and measured. But understanding what factors determine this lower limit, and addressing the host of other questions that follow on from this knowledge, require a fundamental understanding of the chemistry and ecology of cellular life. The recent report of evidence for life in a martian meteorite and the prospect of searching for biological signatures in intelligently chosen samples from Mars and elsewhere bring a new immediacy to such questions. How do we recognize the morphological or chemical remnants of life in rocks deposited 4 billion years ago on another planet? Are the empirical limits on cell size identified by observation on Earth applicable to life wherever it may occur, or is minimum size a function of the particular chemistry of an individual planetary surface? These questions formed the focus of a workshop on the size limits of very small organisms, organized by the Steering .Group for the Workshop on Size Limits of Very Small Microorganisms and held on October 22 and 23, 1998. Eighteen invited panelists, representing fields ranging from cell biology and molecular genetics to paleontology and mineralogy, joined with an almost equal number of other participants in a wide-ranging exploration of minimum cell size and the challenge of interpreting micro- and nano-scale features of sedimentary rocks found on Earth or elsewhere in the solar system. This document contains the proceedings of that workshop. It includes position papers presented by the individual panelists, arranged by panel, along with a summary, for each of the four sessions, of extensive roundtable discussions that involved the panelists as well as other workshop participants.
Download or read book The Social Biology of Microbial Communities written by Institute of Medicine and published by National Academies Press. This book was released on 2013-01-10 with total page 633 pages. Available in PDF, EPUB and Kindle. Book excerpt: Beginning with the germ theory of disease in the 19th century and extending through most of the 20th century, microbes were believed to live their lives as solitary, unicellular, disease-causing organisms . This perception stemmed from the focus of most investigators on organisms that could be grown in the laboratory as cellular monocultures, often dispersed in liquid, and under ambient conditions of temperature, lighting, and humidity. Most such inquiries were designed to identify microbial pathogens by satisfying Koch's postulates.3 This pathogen-centric approach to the study of microorganisms produced a metaphorical "war" against these microbial invaders waged with antibiotic therapies, while simultaneously obscuring the dynamic relationships that exist among and between host organisms and their associated microorganisms-only a tiny fraction of which act as pathogens. Despite their obvious importance, very little is actually known about the processes and factors that influence the assembly, function, and stability of microbial communities. Gaining this knowledge will require a seismic shift away from the study of individual microbes in isolation to inquiries into the nature of diverse and often complex microbial communities, the forces that shape them, and their relationships with other communities and organisms, including their multicellular hosts. On March 6 and 7, 2012, the Institute of Medicine's (IOM's) Forum on Microbial Threats hosted a public workshop to explore the emerging science of the "social biology" of microbial communities. Workshop presentations and discussions embraced a wide spectrum of topics, experimental systems, and theoretical perspectives representative of the current, multifaceted exploration of the microbial frontier. Participants discussed ecological, evolutionary, and genetic factors contributing to the assembly, function, and stability of microbial communities; how microbial communities adapt and respond to environmental stimuli; theoretical and experimental approaches to advance this nascent field; and potential applications of knowledge gained from the study of microbial communities for the improvement of human, animal, plant, and ecosystem health and toward a deeper understanding of microbial diversity and evolution. The Social Biology of Microbial Communities: Workshop Summary further explains the happenings of the workshop.
Download or read book Microbial Evolution and Co Adaptation written by Institute of Medicine and published by National Academies Press. This book was released on 2009-05-10 with total page 330 pages. Available in PDF, EPUB and Kindle. Book excerpt: Dr. Joshua Lederberg - scientist, Nobel laureate, visionary thinker, and friend of the Forum on Microbial Threats - died on February 2, 2008. It was in his honor that the Institute of Medicine's Forum on Microbial Threats convened a public workshop on May 20-21, 2008, to examine Dr. Lederberg's scientific and policy contributions to the marketplace of ideas in the life sciences, medicine, and public policy. The resulting workshop summary, Microbial Evolution and Co-Adaptation, demonstrates the extent to which conceptual and technological developments have, within a few short years, advanced our collective understanding of the microbiome, microbial genetics, microbial communities, and microbe-host-environment interactions.
Download or read book Accessing Uncultivated Microorganisms written by Karsten Zengler and published by . This book was released on 2008 with total page 332 pages. Available in PDF, EPUB and Kindle. Book excerpt: Providing a comprehensive overview and discussing developments in the field, this book details various innovative methods used in microbial ecology and environmental microbiology. It also includes all aspects of microbial diversity from bacteria and fungi to protists.
Download or read book Microbes in Land Use Change Management written by Jay Shankar Singh and published by Elsevier. This book was released on 2021-08-20 with total page 611 pages. Available in PDF, EPUB and Kindle. Book excerpt: Microbes in Land Use Change Management details the various roles of microbial resources in management of land uses and how the microbes can be used for the source of income due to their cultivation for the purpose of biomass and bioenergy production. Using various techniques, the disturbed and marginal lands may also be restored eco-friendly in present era to fulfil the feeding needs of mankind around the globe. Microbes in Land Use Change Management provides standard and up to date information towards the land use change management using various microbial technologies to enhance the productivity of agriculture. Needless to say that Microbes in Land Use Change Management also considers the areas including generation of alternative energy sources, restoration of degraded and marginal lands, mitigation of global warming gases and next generation -omics technique etc. Land use change affects environment conditions and soil microbial community. Microbial population and its species diversity have influence in maintaining ecosystem balance. The study of changes of microbial population provides an idea about the variation occurring in a specific area and possibilities of restoration. Meant for a multidisciplinary audience Microbes in Land Use Change Management shows the need of next-generation omics technologies to explore microbial diversity. - Describes the role of microbes in generation of alternative source of energy - Gives recent information related to various microbial technology and their diversified applications - Provides thorough insight in the problems related to landscape dynamics, restoration of soil, reclamation of lands mitigation of global warming gases etc. eco-friendly way using versatility of microbes - Includes microbial tools and technology in reclamation of degraded, disturbed and marginal lands, mitigation of global warming gases
Download or read book The Impact of Microorganisms on Consumption of Atmospheric Trace Gases written by Steffen Kolb and published by Frontiers Media SA. This book was released on 2017-11-29 with total page 203 pages. Available in PDF, EPUB and Kindle. Book excerpt: Gases with a mixing ratio of less than one percent in the lower atmosphere (i.e. the troposphere) are considered as trace gases. Numerous of these trace gases originate from biological processes in marine and terrestrial ecosystems. These gases are of relevance for the climate as they contribute to global warming or to the troposphere’s chemical reactive system that builds the ozone layer or they impact on the stability of aerosols, greenhouse, and pollutant gases. These reactive trace gases include methane, a multitude of volatile organic compounds of biogenic origin (bVOCs) and inorganic gases such as nitrogen oxides or ozone. The regulatory function of microorganisms for trace gas cycling has been intensively studied for the greenhouse gases nitrous oxide and methane, but is less well understood for microorganisms that metabolize molecular hydrogen, carbon monoxide, or bVOCs. The studies compiled this Research Topic reflect this very well. While a number of articles focus on nitrous oxide and methane or carbon monoxide oxidation, only a few articles address conversion processes of further bVOCs. The Research Topic is complemented by three review articles about the consumption of methane and monoterpenes, as well as the role of the phyllosphere as a particular habitat for trace gas-consuming microorganisms, and point out future research directions in the field. The presented scientific work illustrates that the field of microbial regulation of trace glas fluxes is still in its infancy when one broadens the view on gases beyond methane and nitrous oxide. However, there is a societal need to better predict global dynamics of trace gases that impact on the functionality and warming of the troposphere. Upcoming modelling approaches will need further information on process rates, features and distribution of the driving microorganisms to fullfill this demanding task.
Download or read book Environmental Genomics written by C. Cristofre Martin and published by Springer Science & Business Media. This book was released on 2008-01-18 with total page 363 pages. Available in PDF, EPUB and Kindle. Book excerpt: Here is a manual for an environmental scientist who wishes to embrace genomics to answer environmental questions. The volume covers: gene expression profiling, whole genome and chromosome mutation detection, and methods to assay genome diversity and polymorphisms within a particular environment. This book provides a systematic framework for determining environmental impact and ensuring human health and the sustainability of natural populations.
Download or read book Advances in Microbial Ecology written by K.C. Marshall and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 554 pages. Available in PDF, EPUB and Kindle. Book excerpt: Advances in Microbial Ecology was established by the International Committee on Microbial Ecology (ICOME) to provide a vehicle for in-depth, critical, and even provocative reviews to emphasize recent trends in the important field of microbial ecology. Advances in Microbial Ecology is now recognized as a major source of infor mation and inspiration both for practicing and for prospective microbial ecologists. Most reviews appearing in Advances have been prepared by leaders in particular areas follow ing invitations issued by the Editorial Board. Individuals are encouraged, however, to submit outlines of unsolicited contributions to any member of the Editorial Board for consideration for publication in Advances. With the publication of Volume 12 of Advances in Microbial Ecology there will be a change of Editor and the entire Editorial Board. The current Editor wishes to take this opportunity to thank the present Editorial Board, Ron Atlas, Bo Barker J~rgensen, and Gwyn Jones, as well as past members of the Board, for their assistance and encourage ment over the years. The new Editor of Advances in Microbial Ecology will be Gwyn Jones, with Bernhard Schink, Warwick F. Vincent, and David M. Ward as members of the Editorial Board. The outgoing Board wish the new Board every success in continu ing the traditions established by Martin Alexander, the founding Editor of Advances in Microbial Ecology. The topics featured in Volume 12 of Advances include some related to the meta bolic activities of bacteria; namely, bioremediation of oil spills, by R. M. Atlas and R.
Download or read book Microbial Diversity written by Oladele Ogunseitan and published by John Wiley & Sons. This book was released on 2008-04-15 with total page 312 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book offers the first comprehensive, in-depth treatment of microbial diversity for undergraduate and graduate students. Using a global approach, Microbial Diversity illustrates the impact of microorganisms on ecological and Earth system phenomena. Accompanied by a devoted website with resources for both instructors and students: www.blackwellpublishing.com/ogunseitan Uses key ecological and global phenomena to show the continuity of microbial contribution. Illustrates the importance of microbial diversity for the understanding of global physiochemical and biological processes. Presents analyses of microscopic, culture, molecular, and phylogenetic systematic methods. Shows the relevance of microbial diversity to global environmental problems, such as climate change and ozone depletion. Features numerous illustrations, including over 60 4-color photographs of microbes.
Download or read book Endodontic Microbiology written by Ashraf F. Fouad and published by John Wiley & Sons. This book was released on 2009-04-13 with total page 365 pages. Available in PDF, EPUB and Kindle. Book excerpt: Endodontic Microbiology is a major new work on the microbiology and clinical treatment of endodontic pathosis. Composed of contributions from the leading educators and researchers in the field, this authoritative text offers contemporary evidence and scholarship, bringing the science of endodontic microbiology to clinical practice. Endodontic Microbiology emphasizes the importance of the biological sciences to understanding endodontic disease and its effective management. The book thoroughly examines the expanding and evolving body of knowledge about endodontic microbiology. The topics covered include persistent and resistant microorganisms, virulence factors, and systemic dissemination of endodontic microorganisms. Written by preeminent experts, Endodontic Microbiology summarizes contemporary thought in the field.
Download or read book Microbial Ecology of Wastewater Treatment Plants written by Maulin P. Shah and published by Elsevier. This book was released on 2021-05-15 with total page 572 pages. Available in PDF, EPUB and Kindle. Book excerpt: Microbial Ecology of Wastewater Treatment Plants presents different methods and techniques used in microbial ecology to study the interactions and evolution of microbial populations in WWTPs, particularly the new molecular tools developed in the last decades. These molecular biology-based methods (e.g. studies of DNA, RNA and proteins) provide a high resolution of information compared to traditional ways of studying microbial wastewater populations, such as microscopic examination and culture-based methods. In addition, this book addresses the ability of microorganisms to degrade environmental pollutants. - Describes application of different Omics tools in Wastewater treatment plants (WWTPs) - Demonstrates the role of microorganisms in WWTPs - Includes discussions on the microbial ecology of WWTPs - Covers the microbial diversity of activated sludge - Emphasizes cutting-edge molecular tools
Download or read book The Pangenome written by Hervé Tettelin and published by Springer Nature. This book was released on 2020-04-30 with total page 311 pages. Available in PDF, EPUB and Kindle. Book excerpt: This open access book offers the first comprehensive account of the pan-genome concept and its manifold implications. The realization that the genetic repertoire of a biological species always encompasses more than the genome of each individual is one of the earliest examples of big data in biology that opened biology to the unbounded. The study of genetic variation observed within a species challenges existing views and has profound consequences for our understanding of the fundamental mechanisms underpinning bacterial biology and evolution. The underlying rationale extends well beyond the initial prokaryotic focus to all kingdoms of life and evolves into similar concepts for metagenomes, phenomes and epigenomes. The book’s respective chapters address a range of topics, from the serendipitous emergence of the pan-genome concept and its impacts on the fields of microbiology, vaccinology and antimicrobial resistance, to the study of microbial communities, bioinformatic applications and mathematical models that tie in with complex systems and economic theory. Given its scope, the book will appeal to a broad readership interested in population dynamics, evolutionary biology and genomics.
Download or read book Handbook of Molecular Microbial Ecology I written by Frans J. de Bruijn and published by John Wiley & Sons. This book was released on 2011-10-14 with total page 1155 pages. Available in PDF, EPUB and Kindle. Book excerpt: The premiere two-volume reference on revelations from studying complex microbial communities in many distinct habitats Metagenomics is an emerging field that has changed the way microbiologists study microorganisms. It involves the genomic analysis of microorganisms by extraction and cloning of DNA from a group of microorganisms, or the direct use of the purified DNA or RNA for sequencing, which allows scientists to bypass the usual protocol of isolating and culturing individual microbial species. This method is now used in laboratories across the globe to study microorganism diversity and for isolating novel medical and industrial compounds. Handbook of Molecular Microbial Ecology is the first comprehensive two-volume reference to cover unculturable microorganisms in a large variety of habitats, which could not previously have been analyzed without metagenomic methodology. It features review articles as well as a large number of case studies, based largely on original publications and written by international experts. This first volume, Metagenomics and Complementary Approaches, covers such topics as: Background information on DNA reassociation and use of 16 rRNA and other DNA fingerprinting approaches Species designation in microbiology Metagenomics: Introduction to the basic tools with examples Consortia and databases Bioinformatics Computer-assisted analysis Complementary approaches—microarrays, metatranscriptomics, metaproteomics, metabolomics, and single cell analysis A special feature of this volume is the highlighting of the databases and computer programs used in each study; they are listed along with their sites in order to facilitate the computer-assisted analysis of the vast amount of data generated by metagenomic studies. Handbook of Molecular Microbial Ecology I is an invaluable reference for researchers in metagenomics, microbiology, and environmental microbiology; those working on the Human Microbiome Project; microbial geneticists; molecular microbial ecologists; and professionals in molecular microbiology and bioinformatics.
Download or read book Basic Concepts and Recent Advances in Microbial Diversity Taxonomy Speciation and Evolution written by Suchitra Godbole and published by Cambridge Scholars Publishing. This book was released on 2024-03-05 with total page 414 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book delves into the fundamental principles that underpin the classification and understanding of bacteria, from the basic concepts to the latest advances. This book encompasses numerous topics related to diversity, such as speciation and evolution of species, microbial diversity, and methods for estimating diversity and taxonomy of bacteria. The reader can gain valuable insights into the cutting-edge techniques used to identify and classify bacteria, such as genomics, metagenomics, and phylogenetic analysis. With expert contributions from leading scientists, this comprehensive guide offers a holistic view of the microbial world in the context of their role in global biodiversity, and explores the upcoming role of machine learning and artificial intelligence for exploration of bacterial diversity. For students and researchers in microbiology, genetics and biotechnology, this book is an essential resource for unravelling the mysteries of bacterial speciation, evolution, diversity, and taxonomy.
Download or read book Methods in Aquatic Microbiology written by Tony Gutierrez and published by Frontiers Media SA. This book was released on 2023-12-11 with total page 150 pages. Available in PDF, EPUB and Kindle. Book excerpt:
