Download or read book Genetics and Genomics of the Brassicaceae written by Renate Schmidt and published by Springer Science & Business Media. This book was released on 2010-12-03 with total page 675 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Genetics and Genomics of the Brassicaceae provides a review of this important family (commonly termed the mustard family, or Cruciferae). The family contains several cultivated species, including radish, rocket, watercress, wasabi and horseradish, in addition to the vegetable and oil crops of the Brassica genus. There are numerous further species with great potential for exploitation in 21st century agriculture, particularly as sources of bioactive chemicals. These opportunities are reviewed, in the context of the Brassicaceae in agriculture. More detailed descriptions are provided of the genetics of the cultivated Brassica crops, including both the species producing most of the brassica vegetable crops (B. rapa and B. oleracea) and the principal species producing oilseed crops (B. napus and B. juncea). The Brassicaceae also include important “model” plant species. Most prominent is Arabidopsis thaliana, the first plant species to have its genome sequenced. Natural genetic variation is reviewed for A. thaliana, as are the genetics of the closely related A. lyrata and of the genus Capsella. Self incompatibility is widespread in the Brassicaceae, and this subject is reviewed. Interest arising from both the commercial value of crop species of the Brassicaceae and the importance of Arabidopsis thaliana as a model species, has led to the development of numerous resources to support research. These are reviewed, including germplasm and genomic library resources, and resources for reverse genetics, metabolomics, bioinformatics and transformation. Molecular studies of the genomes of species of the Brassicaceae revealed extensive genome duplication, indicative of multiple polyploidy events during evolution. In some species, such as Brassica napus, there is evidence of multiple rounds of polyploidy during its relatively recent evolution, thus the Brassicaceae represent an excellent model system for the study of the impacts of polyploidy and the subsequent process of diploidisation, whereby the genome stabilises. Sequence-level characterization of the genomes of Arabidopsis thaliana and Brassica rapa are presented, along with summaries of comparative studies conducted at both linkage map and sequence level, and analysis of the structural and functional evolution of resynthesised polyploids, along with a description of the phylogeny and karyotype evolution of the Brassicaceae. Finally, some perspectives of the editors are presented. These focus upon the Brassicaceae species as models for studying genome evolution following polyploidy, the impact of advances in genome sequencing technology, prospects for future transcriptome analysis and upcoming model systems.

Download or read book Gene Prediction written by Martin Kollmar and published by Humana Press. This book was released on 2019-05-19 with total page 284 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume introduces software used for gene prediction with focus on eukaryotic genomes. The chapters in this book describe software and web server usage as applied in common use-cases, and explain ways to simplify re-annotation of long available genome assemblies. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary computational requirements, step-by-step, readily reproducible computational protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and thorough, Gene Prediction: Methods and Protocols is a valuable resource for researchers and research groups working on the assembly and annotation of single species or small groups of species. Chapter 3 is available open access under a CC BY 4.0 license via link.springer.com.

Download or read book Biology of Brassica Coenospecies written by C. Gomez-Campo and published by Elsevier. This book was released on 1999-07-07 with total page 501 pages. Available in PDF, EPUB and Kindle. Book excerpt: Brassica crop species and their allies (Raphanus, Sinapis, Eruca, etc.) are important sources of edible roots, stems, leaves, buds and inflorescences, as well as of edible or industrial oils, condiments and forage. Many well known names of plants or plant products, such as kale, cabbage, brocolli, cauliflower, Brussels sprouts, kohl-rabi, Chinese cabbage, turnip, rape, rutabaga, swede, colza or rapeseed, canola, mustard, rocket, etc. are directly associated to this botanical group.The scientific interest for this botanical group has run parallel to its economical importance, and research achievements in our days would have certainly appeared unimaginable only two decades ago. As the end of the millenium approaches, entirely new fields (transformation, somatic fusion, etc.) have been added to the classical ones. Thus, nobody can doubt the opportuneness of this book, which combines and presents both the basic and applied biological aspects of the Brassica species.

Download or read book The Brassica rapa Genome written by Xiaowu Wang and published by Springer. This book was released on 2015-09-05 with total page 170 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides insights into the latest achievements in genomics research on Brassica rapa. It describes the findings on this Brassica species, the first of the U’s triangle that has been sequenced and a close relative to the model plant Arabidopsis, which provide a basis for investigations of major Brassica crop species. Further, the book focuses on the development of tools to facilitate the transfer of our rich knowledge on Arabidopsis to a cultivated Brassica crop. Key topics covered include genomic resources, assembly tools, annotation of the genome, transposable elements, comparative genomics, evolution of Brassica genomes, and advances in the application of genomics in the breeding of Brassica rapa crops.

Download or read book Glucosinolates written by Jean-Michel Mérillon and published by Springer. This book was released on 2017-05-04 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is the first comprehensive reference compilation on the substance class of glucosinolates. This handbook introduces the reader to the sulfur-containing glucosinolates (S-glucosides), a class of secondary metabolites of almost all plants of the order Capparales, in particular in the family Brassicaceae (e.g. broccoli and other cabbages), derived from glucose and an amino acid. The book illustrates the natural variety of glucosinolate structures, mainly derived from the precursor amino acid. Chapters describe the resulting rich bioactivity of the glucosides, for example as anti-cancer agents, insecticides, nematicides, fungicides, their potential phytotoxic effects, antimicrobial activity and their possible role in neurodegenerative diseases and human health. Different methods for the extraction, characterization, quantification and processing of the glucosinolates are introduced, and potential applications are discussed. The fate of glucosinolates during food processing is also briefly addressed. This handbook is written by leading experts and structured in different sections addressing the natural occurrence of glucosinolates, their (bio-)synthesis, bioactivity, food processing of glucosinolate-containing vegetables, health and disease-related aspects, biotechnology, and methods applied in glucosinolate-research. It is thus a rich reference source for every reader working in the field, from chemists and biotechnologists, to life scientists, pharmacists and medical scientists.

Download or read book Polyploid and Hybrid Genomics written by Z. Jeffrey Chen and published by John Wiley & Sons. This book was released on 2013-04-05 with total page 646 pages. Available in PDF, EPUB and Kindle. Book excerpt: Polyploidy plays an important role in biological diversity, trait improvement, and plant species survival. Understanding the evolutionary phenomenon of polyploidy is a key challenge for plant and crop scientists. This book is made up of contributions from leading researchers in the field from around the world, providing a truly global review of the subject. Providing broad-ranging coverage, and up-to-date information from some of the world’s leading researchers, this book is an invaluable resource for geneticists, plant and crop scientists, and evolutionary biologists.

Download or read book Plant Epigenetics and Epigenomics written by Charles Spillane and published by Humana. This book was released on 2014-01-31 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Many fundamental discoveries concerning epigenetics and the elucidation of mechanisms of epigenetic regulation have developed from studies performed in plants. In Plant Epigenetics and Epigenomics: Methods and Protocols, leading scientists in the epigenetics field describe comprehensive techniques that have been developed to understand the plant epigenetic landscape. These include recently developed methods and techniques for analysis of epigenetically regulated traits, such as flowering time, transposon activation, genomic imprinting and genome dosage effects. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and key tips on troubleshooting and avoidance of known pitfalls. Authoritative and practical, Plant Epigenetics and Epigenomics: Methods and Protocols seek to aid scientists in the further study of plant epigenetic phenomena using advanced contemporary methods.

Download or read book The Teak Genome written by Yasodha Ramasamy and published by Springer Nature. This book was released on 2021-09-01 with total page 280 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is the first comprehensive compilation of knowledge on teak biology, ecology, clonal forestry, clonal registration, seed biology, and seed orchards. The teak genetic diversity, the sequenced genome, and transcriptomes from different tissues and their implications in modern tree improvement and material selection have been comprehensively discussed. The book also presents a narrative on wood characterization, wood chemistry, modern silviculture, growth and modelling, and economics of this valued tropical species. Altogether, the book contains about 200 pages over 16 chapters authored by globally reputed experts on the relevant field in this tropical tree. This book is useful to students, teachers, and scientists, and wood-based industries are interested in forestry, biology, seed orchards, breeding, genetic diversity, molecular genetics, in vitro culture, wood chemistry, and structural and functional genomics.

Download or read book Biodiversity in Agriculture written by Paul Gepts and published by Cambridge University Press. This book was released on 2012-02-23 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: The introduction of plant and animal agriculture represents one of the most important milestones in human evolution. It contributed to the development of cities, alphabets, new technologies, and ultimately to civilizations, but it has also presented a threat to both human health and the environment. Bringing together research from a range of fields including anthropology, archaeology, ecology, economics, entomology, ethnobiology, genetics and geography, this book addresses key questions relating to agriculture. Why did agriculture develop and where did it originate? What are the patterns of domestication for plants and animals? How did agroecosystems originate and spread from their locations of origin? Exploring the cultural aspects of the development of agricultural ecosystems, the book also highlights how these topics can be applied to our understanding of contemporary agriculture, its long-term sustainability, the co-existence of agriculture and the environment, and the development of new crops and varieties.

Download or read book Brassica written by Eng Chong Pua and published by Springer Science & Business Media. This book was released on 2013-04-17 with total page 351 pages. Available in PDF, EPUB and Kindle. Book excerpt: Recent advances in plant cell and molecular biology have opened new avenues for the improvement of crop plants in the genus "Brassica" - oilseeds and vegetables of worldwide economic importance. This volume reviews advances in various areas of "Brassica" biotechnology. It covers the use of rapid-cycle brassicas, tissue culture and gene transfer, molecular genetics, biotic and abiotic stress resistance, and molecular farming. Contributors are world-leading international "Brassica" researchers. The volume is an invaluable reference for plant breeders, researchers and graduate students in the fields of plant biotechnology, agronomy, horticulture, genetics, and cell and molecular biology.

Download or read book Pan genomics Applications Challenges and Future Prospects written by Debmalya Barh and published by Academic Press. This book was released on 2020-03-06 with total page 476 pages. Available in PDF, EPUB and Kindle. Book excerpt: Pan-genomics: Applications, Challenges, and Future Prospects covers current approaches, challenges and future prospects of pan-genomics. The book discusses bioinformatics tools and their applications and focuses on bacterial comparative genomics in order to leverage the development of precise drugs and treatments for specific organisms. The book is divided into three sections: the first, an "overview of pan-genomics and common approaches, brings the main concepts and current approaches on pan-genomics research; the second, "case studies in pan-genomics, thoroughly discusses twelve case, and the last, "current approaches and future prospects in pan-multiomics, encompasses the developments on omics studies to be applied on bacteria related studies. This book is a valuable source for bioinformaticians, genomics researchers and several members of biomedical field interested in understanding further bacterial organisms and their relationship to human health. - Covers the entire spectrum of pangenomics, highlighting the use of specific approaches, case studies and future perspectives - Discusses current bioinformatics tools and strategies for exploiting pangenomics data - Presents twelve case studies with different organisms in order to provide the audience with real examples of pangenomics applicability

Download or read book Invasion Genetics written by Spencer C. H. Barrett and published by John Wiley & Sons. This book was released on 2016-09-19 with total page 404 pages. Available in PDF, EPUB and Kindle. Book excerpt: Invasion Genetics: the Baker & Stebbins legacy provides a state-of-the-art treatment of the evolutionary biology of invasive species, whilst also revisiting the historical legacy of one of the most important books in evolutionary biology: The Genetics of Colonizing Species, published in 1965 and edited by Herbert Baker and G. Ledyard Stebbins. This volume covers a range of topics concerned with the evolutionary biology of invasion including: phylogeography and the reconstruction of invasion history; demographic genetics; the role of stochastic forces in the invasion process; the contemporary evolution of local adaptation; the significance of epigenetics and transgenerational plasticity for invasive species; the genomic consequences of colonization; the search for invasion genes; and the comparative biology of invasive species. A wide diversity of invasive organisms are discussed including plants, animals, fungi and microbes.

Download or read book Incompatibility and Incongruity in Wild and Cultivated Plants written by Dreux de Nettancourt and published by Springer Science & Business Media. This book was released on 2013-03-14 with total page 347 pages. Available in PDF, EPUB and Kindle. Book excerpt: Advances in plant cell molecular biology have considerably increased our understanding of pollen-pistil barriers, particularly those operated by incompatibility mechanisms, and, at the same time, demonstrated the complexity and diversity of rejection systems once considered to be relatively simple. This book reviews the impressive knowledge acquired in the last century on the biology, particularly the inheritance and population genetics of self-incompatibility, and presents the new approaches to the study of the structure, function and evolution of incompatibility alleles and the analysis of cell-cell recognition and pollen rejection. The different methods now available for transforming the breeding behaviour of higher plants are also discussed.

Download or read book The Potato Genome written by Swarup Kumar Chakrabarti and published by Springer. This book was released on 2017-12-26 with total page 332 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book describes the historical importance of potato (Solanum tuberosum L.),potato genetic resources and stocks (including S. tuberosum group Phureja DM1-3 516 R44, a unique doubled monoploid homozygous line) used for potato genome sequencing. It also discusses strategies and tools for high-throughput sequencing, sequence assembly, annotation, analysis, repetitive sequences and genotyping-by-sequencing approaches. Potato (Solanum tuberosum L.; 2n = 4x = 48) is the fourth most important food crop of the world after rice, wheat and maize and holds great potential to ensure both food and nutritional security. It is an autotetraploid crop with complex genetics, acute inbreeding depression and a highly heterozygous nature. Further, the book examines the recent discovery of whole genome sequencing of a few wild potato species genomes, genomics in management and genetic enhancement of Solanum species, new strategies towards durable potato late blight resistance, structural analysis of resistance genes, genomics resources for abiotic stress management, as well as somatic cell genetics and modern approaches in true-potato-seed technology. The complete genome sequence provides a better understanding of potato biology, underpinning evolutionary process, genetics, breeding and molecular efforts to improve various important traits involved in potato growth and development.

Download or read book Incompatibility in Angiosperms written by D. de Nettancourt and published by Springer Science & Business Media. This book was released on 2013-04-17 with total page 245 pages. Available in PDF, EPUB and Kindle. Book excerpt: Attempting to collect, sort out, comment on and summarize from available literature the relevant information dealing with a specific problem is always a difficult task which necessarily involves sub jective choices and implies a considerable risk of errors and omis sions. The difficulty is increased when, as in the case of incompati bility in angiosperms, the subject to be treated traces its history to preDarwinian times and reflects the total sum of numerous in vestigations dealing with widely different disciplines, such as ge netics, cytology, biochemistry, systematics and physiology, which no single reviewer may pretend to master sufficiently to avoid completely the possibility of misinterpretation. Furthermore, the complexity of the task is further augmented by the fact that the student of incompatibility, confronted as he or she is with still poorly understood phenomena of genetic control and molecular recognition, often tends to be speculative and, in some instances, over-imaginative at the time of fitting research observations and experimental data into appropriate models, schemes and hypo theses. The compensation for such a state of affair is, however, a strong one and lies in the remarkable willingness and readiness of "in compatibilists" to cooperate, and to provide information, ex planations and illustrations to anyone attempting to penetrate into their universe of research and of reflection.

Download or read book Brassica Breeding and Biotechnology written by A. K. M. Aminul Islam and published by BoD – Books on Demand. This book was released on 2021-07-07 with total page 176 pages. Available in PDF, EPUB and Kindle. Book excerpt: The family Brassicaceae constitutes one of the world’s most economically important plant groups. These plants are important sources of vegetable oil, vegetables, and condiments. Most of these crops belong to the genus Brassica, which includes common crops such as oilseeds (oilseed rape, mustard) and vegetables (broccoli, cauliflower, brussels sprouts, cabbage, turnip, Chinese cabbage, etc.). Brassica species play an essential role in horticulture and agriculture as well as contribute to the health of populations around the world. The current global climatic model predicts a significant decrease in growth, yield, and productivity of Brassica due to various biotic and abiotic stress factors. Thus, high-yielding, climate-resilient, and disease-resistant Brassica varieties are required to maintain as well as increase future agricultural production. The development of improved cultivars of these crops may become exhausted and improvement could become stagnant when plant breeding is merely based on a single breeding approach. Therefore, the goal of a breeding program should be to develop genetically superior Brassica cultivars suitable for a wide range of environments. This book examines the introgression of insect and disease resistance and other desirable traits into Brassica crops using inter-and/or intra-specific hybridization as well as biotechnological and molecular techniques, which could be useful for improving Brassica crops to ensure food security.

Download or read book Brassica Crops and Wild Allies written by Shigesaburō Tsunoda and published by . This book was released on 1980 with total page 380 pages. Available in PDF, EPUB and Kindle. Book excerpt: