Download or read book Structural Variation of the Chloroplast Genome and Related Bioinformatics Tools written by Tapan Kumar Mohanta and published by Frontiers Media SA. This book was released on 2024-04-18 with total page 141 pages. Available in PDF, EPUB and Kindle. Book excerpt: The plastid genome has been the most important source of data for the reconstruction of plant phylogeny and taxonomic studies. With the rapid advancement of sequencing technology and bioinformatics, it has become laboratory routine work for obtaining plastid genomes (plastome), and population studies can be performed using chloroplast genome data. However, plastid genomes with specific characters such as pseudogenes, gene losses, gene duplications, gene rearrangements, widespread intra-individual polymorphisms, large-scale horizontal gene transfer, etc. have not been systematically studied. For example, plastomes of several saprophytic plants were confirmed to have lost many photosynthesis genes. The IR region of some plants decreased to several hundred base pairs, disappears completely, increased by dozens of kb, or repeat in the same direction. Most of these chloroplast structural variations are related to import plant evolution or special environmental adaptation, but their mechanisms are still unclear and effective analytical tools are lacking.
Download or read book Genomics of Chloroplasts and Mitochondria written by Ralph Bock and published by Springer Science & Business Media. This book was released on 2012-06-05 with total page 502 pages. Available in PDF, EPUB and Kindle. Book excerpt: The past decade has witnessed an explosion of our knowledge on the structure, coding capacity and evolution of the genomes of the two DNA-containing cell organelles in plants: chloroplasts (plastids) and mitochondria. Comparative genomics analyses have provided new insights into the origin of organelles by endosymbioses and uncovered an enormous evolutionary dynamics of organellar genomes. In addition, they have greatly helped to clarify phylogenetic relationships, especially in algae and early land plants with limited morphological and anatomical diversity. This book, written by leading experts, summarizes our current knowledge about plastid and mitochondrial genomes in all major groups of algae and land plants. It also includes chapters on endosymbioses, plastid and mitochondrial mutants, gene expression profiling and methods for organelle transformation. The book is designed for students and researchers in plant molecular biology, taxonomy, biotechnology and evolutionary biology.
Download or read book Bioinformatics in Agriculture written by Pradeep Sharma and published by Academic Press. This book was released on 2022-04-28 with total page 707 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bioinformatics in Agriculture: Next Generation Sequencing Era is a comprehensive volume presenting an integrated research and development approach to the practical application of genomics to improve agricultural crops. Exploring both the theoretical and applied aspects of computational biology, and focusing on the innovation processes, the book highlights the increased productivity of a translational approach. Presented in four sections and including insights from experts from around the world, the book includes: Section I: Bioinformatics and Next Generation Sequencing Technologies; Section II: Omics Application; Section III: Data mining and Markers Discovery; Section IV: Artificial Intelligence and Agribots. Bioinformatics in Agriculture: Next Generation Sequencing Era explores deep sequencing, NGS, genomic, transcriptome analysis and multiplexing, highlighting practices forreducing time, cost, and effort for the analysis of gene as they are pooled, and sequenced. Readers will gain real-world information on computational biology, genomics, applied data mining, machine learning, and artificial intelligence. This book serves as a complete package for advanced undergraduate students, researchers, and scientists with an interest in bioinformatics. Discusses integral aspects of molecular biology and pivotal tool sfor molecular breeding Enables breeders to design cost-effective and efficient breeding strategies Provides examples ofinnovative genome-wide marker (SSR, SNP) discovery Explores both the theoretical and practical aspects of computational biology with focus on innovation processes Covers recent trends of bioinformatics and different tools and techniques
Download or read book Plastid Genome Evolution written by and published by Academic Press. This book was released on 2018-02-03 with total page 396 pages. Available in PDF, EPUB and Kindle. Book excerpt: Plastid Genome Evolution, Volume 85 provides a summary of recent research on plastid genome variation and evolution across photosynthetic organisms. It covers topics ranging from the causes and consequences of genomic changes, to the phylogenetic utility of plastomes for resolving relationships across the photosynthetic tree of life. This newly released volume presents thorough, up-to-date information on coevolution between the plastid and nuclear genomes, with chapters on plastid autonomy vs. nuclear control over plastid function, establishment and genetic integration of plastids, plastid genomes in alveolate protists, plastid genomes of glaucophytes, the evolution of the plastid genome in chlorophyte and streptophyte green algae, and more. Provides comprehensive coverage of plastid genome variation by leading researchers in the field Presents a broad range of taxonomic groups, ranging from single and multicellular algae, to the major clades of land plants Includes thorough, up-to-date information on coevolution between the plastid and nuclear genomes
Download or read book Plant Genotyping written by Jacqueline Batley and published by Humana. This book was released on 2016-08-23 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: The ability to produce vast amounts of DNA sequence data has enabled the discovery of molecular markers in model organisms, crops, as well as orphan species making genotyping the rate limiting factor, and this volume focuses on the different markers available and the low to high throughput genotyping of these markers. Given the diverse nature of some of these systems, an overview is provided on the identification of markers from sequence data, as well as data analysis with example applications once the genotyping data has been generated. Written in the successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols, and notes on troubleshooting and avoiding known pitfalls. Authoritative and easily accessible, Plant Genotyping: Methods and Protocols is aimed at plant molecular biologists, geneticists, plant breeders and ecologists who have a target question and need to know the most suitable markers and genotyping system to use.
Download or read book Permafrost Ecosystems written by Akira Osawa and published by Springer Science & Business Media. This book was released on 2010-01-04 with total page 507 pages. Available in PDF, EPUB and Kindle. Book excerpt: Drawing from a decade-long collaboration between Japan and Russia, this important volume presents the first major synthesis of current knowledge on the ecophysiology of the coniferous forests growing on permafrost at high latitudes. It presents ecological data for a region long inaccessible to most scientists, and raises important questions about the global carbon balance as these systems are affected by the changing climate. Making up around 20% of the entire boreal forests of the northern hemisphere, these ‘permafrost forest ecosystems’ are subject to particular constraints in terms of temperature, nutrient availability, and root space, creating exceptional ecosystem characteristics not known elsewhere. This authoritative text explores their diversity, structure, dynamics and physiology. It provides a comparison of these forests in relation to boreal forests elsewhere, and concludes with an assessment of the potential responses of this unique biome to climate change. The book will be invaluable to advanced students and researchers interested in boreal vegetation, forest ecology, silviculture and forest soils, as well as to researchers into climate change and the global carbon balance.
Download or read book The Chickpea Genome written by Rajeev K. Varshney and published by Springer. This book was released on 2018-01-02 with total page 142 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book sheds new light on the chickpea genome sequencing and resequencing of chickpea germplasm lines and provides insights into classical genetics, cytogenetics, and trait mapping. It also offers an overview of the latest advances in genome sequencing and analysis. The growing human population, rapid climate changes and limited amounts of arable land are creating substantial challenges in connection with the availability and affordability of nutritious food for smallholder farmers in developing countries. In this context, climate smart crops are essential to alleviating the hunger of the millions of poor and undernourished people living in developing countries. In addition to cereals, grain legumes are an integral part of the human diet and provide sustainable income for smallholder farmers in the arid and semi-arid regions of the world. Among grain legumes, the chickpea (Cicer arietinum) is the second most important in terms of production and productivity. Besides being a rich source of proteins, it can fix atmospheric nitrogen through symbiosis with rhizobia and increase the input of combined nitrogen. Several abiotic stresses like drought, heat, salinity, together with biotic stresses like Fusarium wilt, Ascochyta blight, and Botrytis grey mould have led to production losses, as the chickpeas is typically grown in the harsh climates of our planet’s semi-arid regions.
Download or read book Applications of Bioinformatics in Rice Research written by Manoj Kumar Gupta and published by Springer Nature. This book was released on 2021-09-24 with total page 363 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book summarizes the advanced computational methods for mapping high-density linkages and quantitative trait loci in the rice genome. It also discusses the tools for analyzing metabolomics, identifying complex polyploidy genomes, and decoding the extrachromosomal genome in rice. Further, the book highlights the application of CRISPR-Cas technology and methods for understanding the evolutionary development and the de novo evolution of genes in rice. Lastly, it discusses the role of artificial intelligence and machine learning in rice research and computational tools to analyze plant-pathogen co-evolution in rice crops.
Download or read book Cell and Molecular Biology of Plastids written by Ralph Bock and published by Springer Science & Business Media. This book was released on 2007-09-19 with total page 535 pages. Available in PDF, EPUB and Kindle. Book excerpt: The present book provides a comprehensive overview of our current knowledge on plastid biogenesis, plastid-nuclear communication, and the regulation of plastid gene expression at all levels. It also assesses the state-of-the-art in key technologies, such as proteomics and chloroplast transformation. Written by recognized experts in the field, the book further covers crucial post-translational processes in plastid biogenesis and function, including protein processing.
Download or read book The Maize Genome written by Jeffrey Bennetzen and published by Springer. This book was released on 2018-11-24 with total page 390 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book discusses advances in our understanding of the structure and function of the maize genome since publication of the original B73 reference genome in 2009, and the progress in translating this knowledge into basic biology and trait improvement. Maize is an extremely important crop, providing a large proportion of the world’s human caloric intake and animal feed, and serving as a model species for basic and applied research. The exceptionally high level of genetic diversity within maize presents opportunities and challenges in all aspects of maize genetics, from sequencing and genotyping to linking genotypes to phenotypes. Topics covered in this timely book range from (i) genome sequencing and genotyping techniques, (ii) genome features such as centromeres and epigenetic regulation, (iii) tools and resources available for trait genomics, to (iv) applications of allele mining and genomics-assisted breeding. This book is a valuable resource for researchers and students interested in maize genetics and genomics.
Download or read book The Chlamydomonas Sourcebook Introduction to Chlamydomonas and Its Laboratory Use written by Elizabeth H. Harris and published by Academic Press. This book was released on 2009-03-07 with total page 480 pages. Available in PDF, EPUB and Kindle. Book excerpt: Dr. Harris has played a major role in the development of this organism as a model system. Her previous version of the Chlamydomonas Sourcebook which published in 1989, has been a classic in the field and is considered required reading for anyone working with this organism. This latest edition has been expanded to include three volumes providing molecular techniques, analysis of the recently sequenced genome, and reviews of the current status of the diverse fields in which Chlamydomonas is used as a model organism. Methods for Chlamydomonas research and best practices for applications in research, including methods for culture, preservation of cultures, preparation of media, lists of inhibitors and other additives to culture media, are included. Additions to this volume also include help with common laboratory problems such as contamination, student demonstrations, and properties of particular strains and mutants. This volume is part of a 3-Volume Set (ISBN: 978-0-12-370873-1) and is also sold individually. Expanded revision of gold standard reference Includes latest advances in research, including completion of the genome Provides broad perspective with studies in cell and molecular biology, genetics, plant physiology and related fields Available as part of a 3-Volume Set or sold individually
Download or read book PCR Primer Design written by Chhandak Basu and published by . This book was released on 2021 with total page 276 pages. Available in PDF, EPUB and Kindle. Book excerpt: This third edition provides new and updated chapters on design PCR primers for successful DNA amplification. Chapters are divided into seven parts, including primer design strategies for quantitative PCR, genotyping, multiplex PCR, in silico PCR primer design, and primer design to identify plant and animal viruses. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and easily accessible, PCR Primer Design, Third Edition aims to be useful for various fields of molecular biology, including biotechnology, molecular genetics, and recombinant DNA technology.
Download or read book Bioinformatics for Beginners written by Supratim Choudhuri and published by Elsevier. This book was released on 2014-05-09 with total page 238 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bioinformatics for Beginners: Genes, Genomes, Molecular Evolution, Databases and Analytical Tools provides a coherent and friendly treatment of bioinformatics for any student or scientist within biology who has not routinely performed bioinformatic analysis. The book discusses the relevant principles needed to understand the theoretical underpinnings of bioinformatic analysis and demonstrates, with examples, targeted analysis using freely available web-based software and publicly available databases. Eschewing non-essential information, the work focuses on principles and hands-on analysis, also pointing to further study options. Avoids non-essential coverage, yet fully describes the field for beginners Explains the molecular basis of evolution to place bioinformatic analysis in biological context Provides useful links to the vast resource of publicly available bioinformatic databases and analysis tools Contains over 100 figures that aid in concept discovery and illustration
Download or read book Rise to the challenges in plastome phylogenomics written by Wenpan Dong and published by Frontiers Media SA. This book was released on 2023-06-23 with total page 133 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Cell Culture and Somatic Cell Genetics of Plants written by Indra K. Vasil and published by . This book was released on 1984 with total page 366 pages. Available in PDF, EPUB and Kindle. Book excerpt: V. 1. Laboratory procedures and their applications.--v. 2. Cell growth, nutrition, cytodifferentiation, and cryopreservation.--v. 3. Plant regeneration and genetic variability.--v. 4. Cell culture in phytochemistry.--v. 5. Phytoche micals in plant cell cultures.--v. 6. Molecular biology of plant nuclear genes. --v. 7A. The molecular biology of plastids.--v. 7B. The photosynthetic apparatus: molecular biology and operation.--v. 8. Scale-up and automation in plant propagation.
Download or read book Teucrium Species Biology and Applications written by Milan Stanković and published by Springer Nature. This book was released on 2020-12-02 with total page 435 pages. Available in PDF, EPUB and Kindle. Book excerpt: Teucrium species are an intersting object of research in the various aspects of science with multiple applications. With more than 300 species, Teucrium is one of the largest and well distributed genera of the Lamiaceae family. Known medicinal Teucrium species have a long traditional use as well as different potential applications in pharmacy, food and beverage industry. Teucrium species are very rich in a variety of secondary metabolites with significant biological activities. Based on that, the book contains 15 chapters which discusses recent advances in exploring the unique features of Teucrium species including morphology, systematics, taxonomy, biogeography, ethnobotany, phytochemistry, biological activity such as genotoxic, antioxidant, antibacterial, antifungal, antiviral, anticancer, anticholinesterase, antidiabetic and anti-inflammatory activity of secondary metabolites as well as applications including current challenges and further perspectives. Some medicinal Teucrium species in excessive use can cause certain consequences. This phenomenon and precaution is also described. Whilst this book is primarily aimed at scientists, researchers, beginners in the investigations of Teucrium species, graduate and post-graduate students in biology, botany, biotechnology, agriculture, and pharmacy, as well as science enthusiasts and practitioners involved in medicinal plants applications. Book provides complete Teucrium species list, color photographs of selected Teucrium species on natural habitats, as well as up-to-date bibliography related to Teucrium genus.
Download or read book Application in Evolutionary Novelties and Diversities Medicine Agriculture and Conservation written by Shengqian Xia and published by Frontiers Media SA. This book was released on with total page 112 pages. Available in PDF, EPUB and Kindle. Book excerpt:
