Download or read book Statistical Analysis of fMRI Data second edition written by F. Gregory Ashby and published by MIT Press. This book was released on 2019-09-17 with total page 569 pages. Available in PDF, EPUB and Kindle. Book excerpt: A guide to all aspects of experimental design and data analysis for fMRI experiments, completely revised and updated for the second edition. Functional magnetic resonance imaging (fMRI), which allows researchers to observe neural activity in the human brain noninvasively, has revolutionized the scientific study of the mind. An fMRI experiment produces massive amounts of highly complex data for researchers to analyze. This book describes all aspects of experimental design and data analysis for fMRI experiments, covering every step—from preprocessing to advanced methods for assessing functional connectivity—as well as the most popular multivariate approaches. The goal is not to describe which buttons to push in the popular software packages but to help researchers understand the basic underlying logic, the assumptions, the strengths and weaknesses, and the appropriateness of each method. The field of fMRI research has advanced dramatically in recent years, in both methodology and technology, and this second edition has been completely revised and updated. Six new chapters cover experimental design, functional connectivity analysis through the methods of psychophysiological interactions and beta-series regression, decoding using multi-voxel pattern analysis, dynamic causal modeling, and representational similarity analysis. Other chapters offer new material on recently discovered problems related to head movements, the multivariate GLM, meta-analysis, and other topics. All complex derivations now appear at the end of the relevant chapter to improve readability. A new appendix describes how to build a design matrix with effect coding for group analysis. As in the first edition, MATLAB code is provided with which readers can implement many of the methods described.

Download or read book The Statistical Analysis of Functional MRI Data written by Nicole Lazar and published by Springer Science & Business Media. This book was released on 2008-06-10 with total page 302 pages. Available in PDF, EPUB and Kindle. Book excerpt: The study of brain function is one of the most fascinating pursuits of m- ern science. Functional neuroimaging is an important component of much of the current research in cognitive, clinical, and social psychology. The exci- ment of studying the brain is recognized in both the popular press and the scienti?c community. In the pages of mainstream publications, including The New York Times and Wired, readers can learn about cutting-edge research into topics such as understanding how customers react to products and - vertisements (“If your brain has a ‘buy button,’ what pushes it?”, The New York Times,October19,2004),howviewersrespondtocampaignads(“Using M. R. I. ’s to see politics on the brain,” The New York Times, April 20, 2004; “This is your brain on Hillary: Political neuroscience hits new low,” Wired, November 12,2007),howmen and womenreactto sexualstimulation (“Brain scans arouse researchers,”Wired, April 19, 2004), distinguishing lies from the truth (“Duped,” The New Yorker, July 2, 2007; “Woman convicted of child abuse hopes fMRI can prove her innocence,” Wired, November 5, 2007), and even what separates “cool” people from “nerds” (“If you secretly like Michael Bolton, we’ll know,” Wired, October 2004). Reports on pathologies such as autism, in which neuroimaging plays a large role, are also common (for - stance, a Time magazine cover story from May 6, 2002, entitled “Inside the world of autism”).

Download or read book Handbook of Functional MRI Data Analysis written by Russell A. Poldrack and published by Cambridge University Press. This book was released on 2024-02-08 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Functional magnetic resonance imaging (fMRI) has become the most popular method for imaging brain function. Handbook for Functional MRI Data Analysis provides a comprehensive and practical introduction to the methods used for fMRI data analysis. Using minimal jargon, this book explains the concepts behind processing fMRI data, focusing on the techniques that are most commonly used in the field. This book provides background about the methods employed by common data analysis packages including FSL, SPM, and AFNI. Some of the newest cutting-edge techniques, including pattern classification analysis, connectivity modeling, and resting state network analysis, are also discussed. Readers of this book, whether newcomers to the field or experienced researchers, will obtain a deep and effective knowledge of how to employ fMRI analysis to ask scientific questions and become more sophisticated users of fMRI analysis software.

Download or read book Statistical Parametric Mapping The Analysis of Functional Brain Images written by William D. Penny and published by Elsevier. This book was released on 2011-04-28 with total page 689 pages. Available in PDF, EPUB and Kindle. Book excerpt: In an age where the amount of data collected from brain imaging is increasing constantly, it is of critical importance to analyse those data within an accepted framework to ensure proper integration and comparison of the information collected. This book describes the ideas and procedures that underlie the analysis of signals produced by the brain. The aim is to understand how the brain works, in terms of its functional architecture and dynamics. This book provides the background and methodology for the analysis of all types of brain imaging data, from functional magnetic resonance imaging to magnetoencephalography. Critically, Statistical Parametric Mapping provides a widely accepted conceptual framework which allows treatment of all these different modalities. This rests on an understanding of the brain's functional anatomy and the way that measured signals are caused experimentally. The book takes the reader from the basic concepts underlying the analysis of neuroimaging data to cutting edge approaches that would be difficult to find in any other source. Critically, the material is presented in an incremental way so that the reader can understand the precedents for each new development. This book will be particularly useful to neuroscientists engaged in any form of brain mapping; who have to contend with the real-world problems of data analysis and understanding the techniques they are using. It is primarily a scientific treatment and a didactic introduction to the analysis of brain imaging data. It can be used as both a textbook for students and scientists starting to use the techniques, as well as a reference for practicing neuroscientists. The book also serves as a companion to the software packages that have been developed for brain imaging data analysis. An essential reference and companion for users of the SPM software Provides a complete description of the concepts and procedures entailed by the analysis of brain images Offers full didactic treatment of the basic mathematics behind the analysis of brain imaging data Stands as a compendium of all the advances in neuroimaging data analysis over the past decade Adopts an easy to understand and incremental approach that takes the reader from basic statistics to state of the art approaches such as Variational Bayes Structured treatment of data analysis issues that links different modalities and models Includes a series of appendices and tutorial-style chapters that makes even the most sophisticated approaches accessible

Download or read book Introduction to Functional Magnetic Resonance Imaging written by Richard B. Buxton and published by Cambridge University Press. This book was released on 2009-08-27 with total page 479 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is the second edition of a useful introductory book on a technique that has revolutionized neuroscience, specifically cognitive neuroscience. Functional magnetic resonance imaging (fMRI) has now become the standard tool for studying the brain systems involved in cognitive and emotional processing. It has also been a major factor in the consilience of the fields of neurobiology, cognitive psychology, social psychology, radiology, physics, mathematics, engineering, and even philosophy. Written and edited by a clinician-scientist in the field, this book remains an excellent user's guide to t

Download or read book Handbook of Neuroimaging Data Analysis written by Hernando Ombao and published by CRC Press. This book was released on 2016-11-18 with total page 702 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book explores various state-of-the-art aspects behind the statistical analysis of neuroimaging data. It examines the development of novel statistical approaches to model brain data. Designed for researchers in statistics, biostatistics, computer science, cognitive science, computer engineering, biomedical engineering, applied mathematics, physics, and radiology, the book can also be used as a textbook for graduate-level courses in statistics and biostatistics or as a self-study reference for Ph.D. students in statistics, biostatistics, psychology, neuroscience, and computer science.

Download or read book fMRI written by Peter A. Bandettini and published by MIT Press. This book was released on 2020-02-25 with total page 282 pages. Available in PDF, EPUB and Kindle. Book excerpt: An accessible introduction to the history, fundamental concepts, challenges, and controversies of the fMRI by one of the pioneers in the field. The discovery of functional MRI (fMRI) methodology in 1991 was a breakthrough in neuroscience research. This non-invasive, relatively high-speed, and high sensitivity method of mapping human brain activity enabled observation of subtle localized changes in blood flow associated with brain activity. Thousands of scientists around the world have not only embraced fMRI as a new and powerful method that complemented their ongoing studies but have also gone on to redirect their research around this revolutionary technique. This volume in the MIT Press Essential Knowledge series offers an accessible introduction to the history, fundamental concepts, challenges, and controversies of fMRI, written by one of the pioneers in the field. Peter Bandettini covers the essentials of fMRI, providing insight and perspective from his nearly three decades of research. He describes other brain imaging and assessment methods; the sources of fMRI contrasts; the basic methodology, from hardware to pulse sequences; brain activation experiment design strategies; and data and image processing. A unique, standalone chapter addresses major controversies in the field, outlining twenty-six challenges that have helped shape fMRI research. Finally, Bandettini lays out the four essential pillars of fMRI: technology, methodology, interpretation, and applications. The book can serve as a guide for the curious nonexpert and a reference for both veteran and novice fMRI scientists.

Download or read book An Introduction to the Event Related Potential Technique second edition written by Steven J. Luck and published by MIT Press. This book was released on 2014-05-30 with total page 417 pages. Available in PDF, EPUB and Kindle. Book excerpt: An essential guide to designing, conducting, and analyzing event-related potential (ERP) experiments, completely updated for this edition. The event-related potential (ERP) technique, in which neural responses to specific events are extracted from the EEG, provides a powerful noninvasive tool for exploring the human brain. This volume describes practical methods for ERP research along with the underlying theoretical rationale. It offers researchers and students an essential guide to designing, conducting, and analyzing ERP experiments. This second edition has been completely updated, with additional material, new chapters, and more accessible explanations. Freely available supplementary material, including several online-only chapters, offer expanded or advanced treatment of selected topics. The first half of the book presents essential background information, describing the origins of ERPs, the nature of ERP components, and the design of ERP experiments. The second half of the book offers a detailed treatment of the main steps involved in conducting ERP experiments, covering such topics as recording the EEG, filtering the EEG and ERP waveforms, and quantifying amplitudes and latencies. Throughout, the emphasis is on rigorous experimental design and relatively simple analyses. New material in the second edition includes entire chapters devoted to components, artifacts, measuring amplitudes and latencies, and statistical analysis; updated coverage of recording technologies; concrete examples of experimental design; and many more figures. Online chapters cover such topics as overlap, localization, writing and reviewing ERP papers, and setting up and running an ERP lab.

Download or read book Analysis of Neural Data written by Robert E. Kass and published by Springer. This book was released on 2014-07-08 with total page 663 pages. Available in PDF, EPUB and Kindle. Book excerpt: Continual improvements in data collection and processing have had a huge impact on brain research, producing data sets that are often large and complicated. By emphasizing a few fundamental principles, and a handful of ubiquitous techniques, Analysis of Neural Data provides a unified treatment of analytical methods that have become essential for contemporary researchers. Throughout the book ideas are illustrated with more than 100 examples drawn from the literature, ranging from electrophysiology, to neuroimaging, to behavior. By demonstrating the commonality among various statistical approaches the authors provide the crucial tools for gaining knowledge from diverse types of data. Aimed at experimentalists with only high-school level mathematics, as well as computationally-oriented neuroscientists who have limited familiarity with statistics, Analysis of Neural Data serves as both a self-contained introduction and a reference work.

Download or read book Functional Magnetic Resonance Imaging written by Scott A. Huettel and published by . This book was released on 2004 with total page 492 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book fMRI Techniques and Protocols written by Massimo Filippi and published by Humana Press. This book was released on 2009-09-01 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: As fMRI technology has provided invaluable insights into the mechanisms through which the human brain works in healthy individuals and in patients with different neurological and psychiatric conditions, the study of brain function and even the monitoring of the effects of treatment have become more effective and efficient. In fMRI Techniques and Protocols, an international assemblage of renowned scientists and physicians provide the background needed to plan and design new studies in order to advance our knowledge of the physiology of the normal human brain and its change following tissue injury. With sections focusing on basic principles of fMRI, its application to measure brain function, clinical applications, and glimpses into the future of fMRI development, the volume condenses this ample, varied field into one user-friendly compendium of information and techniques. Comprehensive and cutting-edge, fMRI Techniques and Protocols is an ideal guide for all those who wish to continue expanding this dynamic and ever-growing field of research.

Download or read book Cancer Mortality and Morbidity Patterns in the U S Population written by K.G. Manton and published by Springer Science & Business Media. This book was released on 2008-12-28 with total page 463 pages. Available in PDF, EPUB and Kindle. Book excerpt: The purpose of this book is to examine the etiology of cancer in large human populations using mathematical models developed from an inter-disciplinary perspective of the population epidemiological, biodemographic, genetic and physiological basis of the mechanisms of cancer initiation and progression. In addition an investigation of how the basic mechanism of tumor initiation relates to general processes of senescence and to other major chronic diseases (e.g., heart disease and stroke) will be conducted.

Download or read book Statistical Techniques for Neuroscientists written by Young K. Truong and published by CRC Press. This book was released on 2016-10-04 with total page 349 pages. Available in PDF, EPUB and Kindle. Book excerpt: Statistical Techniques for Neuroscientists introduces new and useful methods for data analysis involving simultaneous recording of neuron or large cluster (brain region) neuron activity. The statistical estimation and tests of hypotheses are based on the likelihood principle derived from stationary point processes and time series. Algorithms and software development are given in each chapter to reproduce the computer simulated results described therein. The book examines current statistical methods for solving emerging problems in neuroscience. These methods have been applied to data involving multichannel neural spike train, spike sorting, blind source separation, functional and effective neural connectivity, spatiotemporal modeling, and multimodal neuroimaging techniques. The author provides an overview of various methods being applied to specific research areas of neuroscience, emphasizing statistical principles and their software. The book includes examples and experimental data so that readers can understand the principles and master the methods. The first part of the book deals with the traditional multivariate time series analysis applied to the context of multichannel spike trains and fMRI using respectively the probability structures or likelihood associated with time-to-fire and discrete Fourier transforms (DFT) of point processes. The second part introduces a relatively new form of statistical spatiotemporal modeling for fMRI and EEG data analysis. In addition to neural scientists and statisticians, anyone wishing to employ intense computing methods to extract important features and information directly from data rather than relying heavily on models built on leading cases such as linear regression or Gaussian processes will find this book extremely helpful.

Download or read book Analyzing Linguistic Data written by R. H. Baayen and published by Cambridge University Press. This book was released on 2008-03-06 with total page 40 pages. Available in PDF, EPUB and Kindle. Book excerpt: Statistical analysis is a useful skill for linguists and psycholinguists, allowing them to understand the quantitative structure of their data. This textbook provides a straightforward introduction to the statistical analysis of language. Designed for linguists with a non-mathematical background, it clearly introduces the basic principles and methods of statistical analysis, using 'R', the leading computational statistics programme. The reader is guided step-by-step through a range of real data sets, allowing them to analyse acoustic data, construct grammatical trees for a variety of languages, quantify register variation in corpus linguistics, and measure experimental data using state-of-the-art models. The visualization of data plays a key role, both in the initial stages of data exploration and later on when the reader is encouraged to criticize various models. Containing over 40 exercises with model answers, this book will be welcomed by all linguists wishing to learn more about working with and presenting quantitative data.

Download or read book Handbook of functional connectivity Magnetic Resonance Imaging methods in CONN written by Alfonso Nieto-Castanon and published by Hilbert Press. This book was released on 2020-01-31 with total page 108 pages. Available in PDF, EPUB and Kindle. Book excerpt: This handbook describes methods for processing and analyzing functional connectivity Magnetic Resonance Imaging (fcMRI) data using the CONN toolbox, a popular freely-available functional connectivity analysis software. Content description [excerpt from introduction] The first section (fMRI minimal preprocessing pipeline) describes standard and advanced preprocessing steps in fcMRI. These steps are aimed at correcting or minimizing the influence of well-known factors affecting the quality of functional and anatomical MRI data, including effects arising from subject motion within the scanner, temporal and spatial image distortions due to the sequential nature of the scanning acquisition protocol, and inhomogeneities in the scanner magnetic field, as well as anatomical differences among subjects. Even after these conventional preprocessing steps, the measured blood-oxygen-level-dependent (BOLD) signal often still contains a considerable amount of noise from a combination of physiological effects, outliers, and residual subject-motion factors. If unaccounted for, these factors would introduce very strong and noticeable biases in all functional connectivity measures. The second section (fMRI denoising pipeline) describes standard and advanced denoising procedures in CONN that are used to characterize and remove the effect of these residual non-neural noise sources. Functional connectivity Magnetic Resonance Imaging studies attempt to quantify the level of functional integration across different brain areas. The third section (functional connectivity measures) describes a representative set of functional connectivity measures available in CONN, each focusing on different indicators of functional integration, including seed-based connectivity measures, ROI-to-ROI measures, graph theoretical approaches, network-based measures, and dynamic connectivity measures. Second-level analyses allow researchers to make inferences about properties of groups or populations, by generalizing from the observations of only a subset of subjects in a study. The fourth section (General Linear Model) describes the mathematics behind the General Linear Model (GLM), the approach used in CONN for all second-level analyses of functional connectivity measures. The description includes GLM model definition, parameter estimation, and hypothesis testing framework, as well as several practical examples and general guidelines aimed at helping researchers use this method to answer their specific research questions. The last section (cluster-level inferences) details several approaches implemented in CONN that allow researchers to make meaningful inferences from their second-level analysis results while providing appropriate family-wise error control (FWEC), whether in the context of voxel-based measures, such as when studying properties of seed-based maps across multiple subjects, or in the context of ROI-to-ROI measures, such as when studying properties of ROI-to-ROI connectivity matrices across multiple subjects.

Download or read book Functional Statistics and Related Fields written by Germán Aneiros and published by Springer. This book was released on 2017-04-25 with total page 288 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume collects latest methodological and applied contributions on functional, high-dimensional and other complex data, related statistical models and tools as well as on operator-based statistics. It contains selected and refereed contributions presented at the Fourth International Workshop on Functional and Operatorial Statistics (IWFOS 2017) held in A Coruña, Spain, from 15 to 17 June 2017. The series of IWFOS workshops was initiated by the Working Group on Functional and Operatorial Statistics at the University of Toulouse in 2008. Since then, many of the major advances in functional statistics and related fields have been periodically presented and discussed at the IWFOS workshops.

Download or read book Handbook of Developmental Cognitive Neuroscience second edition written by Charles A. Nelson and published by MIT Press. This book was released on 2008-07-11 with total page 985 pages. Available in PDF, EPUB and Kindle. Book excerpt: The second edition of an essential resource to the evolving field of developmental cognitive neuroscience, completely revised, with expanded emphasis on social neuroscience, clinical disorders, and imaging genomics. The publication of the second edition of this handbook testifies to the rapid evolution of developmental cognitive neuroscience as a distinct field. Brain imaging and recording technologies, along with well-defined behavioral tasks—the essential methodological tools of cognitive neuroscience—are now being used to study development. Technological advances have yielded methods that can be safely used to study structure-function relations and their development in children's brains. These new techniques combined with more refined cognitive models account for the progress and heightened activity in developmental cognitive neuroscience research. The Handbook covers basic aspects of neural development, sensory and sensorimotor systems, language, cognition, emotion, and the implications of lifelong neural plasticity for brain and behavioral development. The second edition reflects the dramatic expansion of the field in the seven years since the publication of the first edition. This new Handbook has grown from forty-one chapters to fifty-four, all original to this edition. It places greater emphasis on affective and social neuroscience—an offshoot of cognitive neuroscience that is now influencing the developmental literature. The second edition also places a greater emphasis on clinical disorders, primarily because such research is inherently translational in nature. Finally, the book's new discussions of recent breakthroughs in imaging genomics include one entire chapter devoted to the subject. The intersection of brain, behavior, and genetics represents an exciting new area of inquiry, and the second edition of this essential reference work will be a valuable resource for researchers interested in the development of brain-behavior relations in the context of both typical and atypical development.