Download or read book Single Molecule Biophysics and Poisson Process Approach to Statistical Mechanics written by S K Sarkar and published by Myprint. This book was released on 2016-04-20 with total page 76 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Single Molecule Biophysics and Poisson Process Approach to Statistical Mechanics written by Susanta K Sarkar and published by Morgan & Claypool Publishers. This book was released on 2016-04-01 with total page 74 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is an overview of single molecule physics, the study of both equilibrium and non-equilibrium properties at the single molecule level. It begins with an introduction to this fascinating science and includes a chapter on how to build the most popular instrument for single molecule biophysics, the total internal reflection fluorescence (TIRF) microscope. It concludes with the Poisson process approach to statistical mechanics, explaining how to relate the process to diverse areas and see how data analysis and error bars are integral parts of science.
Download or read book Introduction to the Statistics of Poisson Processes and Applications written by Yury A. Kutoyants and published by Springer Nature. This book was released on 2023-09-04 with total page 683 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book covers an extensive class of models involving inhomogeneous Poisson processes and deals with their identification, i.e. the solution of certain estimation or hypothesis testing problems based on the given dataset. These processes are mathematically easy-to-handle and appear in numerous disciplines, including astronomy, biology, ecology, geology, seismology, medicine, physics, statistical mechanics, economics, image processing, forestry, telecommunications, insurance and finance, reliability, queuing theory, wireless networks, and localisation of sources. Beginning with the definitions and properties of some fundamental notions (stochastic integral, likelihood ratio, limit theorems, etc.), the book goes on to analyse a wide class of estimators for regular and singular statistical models. Special attention is paid to problems of change-point type, and in particular cusp-type change-point models, then the focus turns to the asymptotically efficient nonparametric estimation of the mean function, the intensity function, and of some functionals. Traditional hypothesis testing, including some goodness-of-fit tests, is also discussed. The theory is then applied to three classes of problems: misspecification in regularity (MiR),corresponding to situations where the chosen change-point model and that of the real data have different regularity; optical communication with phase and frequency modulation of periodic intensity functions; and localization of a radioactive (Poisson) source on the plane using K detectors. Each chapter concludes with a series of problems, and state-of-the-art references are provided, making the book invaluable to researchers and students working in areas which actively use inhomogeneous Poisson processes.
Download or read book Statistical Physics of Biomolecules written by Daniel M. Zuckerman and published by CRC Press. This book was released on 2010-06-02 with total page 356 pages. Available in PDF, EPUB and Kindle. Book excerpt: From the hydrophobic effect to protein-ligand binding, statistical physics is relevant in almost all areas of molecular biophysics and biochemistry, making it essential for modern students of molecular behavior. But traditional presentations of this material are often difficult to penetrate. Statistical Physics of Biomolecules: An Introduction brin
Download or read book Theory and Evaluation of Single molecule Signals written by Eli Barkai and published by World Scientific. This book was released on 2008 with total page 416 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book reviews recently developed theoretical and numerical approaches to deal with optical and mechanical signals from individual molecules. The character of data generated by single molecules, and more generally by single nano-objects, qualitatively differs from those obtained in conventional experiments on large ensembles of molecules. Fluctuations, randomness and irreproducibility are central to single-molecule measurements, and the specific methods required to extract reliable and statistically relevant information from them are presented here. With contributions mainly from participants of the ?Theory, Modeling and Evaluation of Single-Molecule Measurements? workshop held in Leiden, the Netherlands, on April 16-20, 2007, this book is an authoritative compendium on the subject.
Download or read book Statistical Physics written by Bernard H. Lavenda and published by Wiley-Interscience. This book was released on 1991-11-15 with total page 392 pages. Available in PDF, EPUB and Kindle. Book excerpt: There is a single, central theme to this book: the connection between entropy and probability is through a law of error for extensive thermodynamic variables and Boltzmann’s principle is a consequence of it. This is the missing link that removes the ambiguity from Boltzmann’s principle and serves as an extremely powerful tool in the analysis of physical phenomena which can be subjected to a statistical analysis. Moreover, it will allow statistical thermodynamics to be viewed from the perspective of the theory of mathematical statistics.
Download or read book Statistics and Related Topics in Single Molecule Biophysics written by Hong Qian and published by . This book was released on 2014 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Since the universal acceptance of atoms and molecules as the fundamental constituents of matter in the early-twentieth century, molecular physics, chemistry, and molecular biology have all experienced major theoretical breakthroughs. Although researchers had to wait until the 1970s to see individual biological macromolecules one at a time in action, the field of single-molecule biophysics has witnessed extensive growth in both experiments and theory since then. A distinct feature of single-molecule biophysics is that the motions and interactions of molecules as well as the transformation of molecular species are necessarily described in the language of stochastic processes, whether one investigates equilibrium or far-from-equilibrium living behavior. For laboratory measurements following a biological process, analysis of experimental data obtained by sampling individual participating molecules over time naturally calls for the inference of stochastic processes. The theoretical and experimental developments of single-molecule biophysics thus present interesting questions and unique opportunities for applied statisticians and probabilists. In this article, we review some important statistical developments in connection to single-molecule biophysics, emphasizing the application of stochastic-process theory and the statistical questions arising from modeling and analyzing experimental data.
Download or read book Statistical Mechanics Kinetic theory and Stochastic Processes written by C.V. Heer and published by Elsevier. This book was released on 2012-12-02 with total page 619 pages. Available in PDF, EPUB and Kindle. Book excerpt: Statistical Mechanics, Kinetic Theory, and Stochastic Processes presents the statistical aspects of physics as a "living and dynamic" subject. In order to provide an elementary introduction to kinetic theory, physical systems in which particle-particle interaction can be neglected are considered. Transport phenomena in the free-molecular flow region for gases and the transport of thermal radiation are discussed. Discrete random processes such as random walk, binomial and Poisson distributions, and throwing of dice are studied by means of the characteristic function. Comprised of 11 chapters, this book begins with an introduction to the mass point gas as well as some elementary properties of space and velocity distributions. The discussion then turns to radiation and its interaction with an atom; probability, statistics, and conditional probability; intermolecular interactions; transport phenomena; and statistical thermodynamics. Molecular systems at low densities are also considered, together with non-ideal and real gases; liquids and solids; and stochastic processes, noise, and fluctuations. In particular, the response of atoms and molecules to perturbations and scattering by crystals, liquids, and high-pressure gases are examined. This monograph will be useful for undergraduate students, practitioners, and researchers in physics.
Download or read book Equilibria and Kinetics of Biological Macromolecules written by Prof. Jan Hermans and published by John Wiley & Sons. This book was released on 2013-10-22 with total page 411 pages. Available in PDF, EPUB and Kindle. Book excerpt: Progressively builds a deep understanding of macromolecular behavior Based on each of the authors' roughly forty years of biophysics research and teaching experience, this text instills readers with a deep understanding of the biophysics of macromolecules. It sets a solid foundation in the basics by beginning with core physical concepts such as thermodynamics, quantum chemical models, molecular structure and interactions, and water and the hydrophobic effect. Next, the book examines statistical mechanics, protein-ligand binding, and conformational stability. Finally, the authors address kinetics and equilibria, exploring underlying theory, protein folding, and stochastic models. With its strong emphasis on molecular interactions, Equilibria and Kinetics of Biological Macromolecules offers new insights and perspectives on proteins and other macromolecules. The text features coverage of: Basic theory, applications, and new research findings Related topics in thermodynamics, quantum mechanics, statistical mechanics, and molecular simulations Principles and applications of molecular simulations in a dedicated chapter and interspersed throughout the text Macromolecular binding equilibria from the perspective of statistical mechanics Stochastic processes related to macromolecules Suggested readings at the end of each chapter include original research papers, reviews and monographs, enabling readers to explore individual topics in greater depth. At the end of the text, ten appendices offer refreshers on mathematical treatments, including probability, computational methods, Poisson equations, and defining molecular boundaries. With its classroom-tested pedagogical approach, Equilibria and Kinetics of Biological Macromolecules is recommended as a graduate-level textbook for biophysics courses and as a reference for researchers who want to strengthen their understanding of macromolecular behavior.
Download or read book Statistical Mechanics with Applications to Physics and Chemistry written by Richard Chace Tolman and published by . This book was released on 1927 with total page 340 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Progress in Statistical Mechanics Research written by Javier S. Moreno and published by Nova Publishers. This book was released on 2008 with total page 470 pages. Available in PDF, EPUB and Kindle. Book excerpt: Statistical mechanics is the application of probability theory, which includes mathematical tools for dealing with large populations, to the field of mechanics, which is concerned with the motion of particles or objects when subjected to a force. It provides a framework for relating the microscopic properties of individual atoms and molecules to the macroscopic or bulk properties of materials that can be observed in everyday life, therefore explaining thermodynamics as a natural result of statistics and mechanics (classical and quantum) at the microscopic level. In particular, it can be used to calculate the thermodynamic properties of bulk materials from the spectroscopic data of individual molecules. This ability to make macroscopic predictions based on microscopic properties is the main asset of statistical mechanics over thermodynamics. Both theories are governed by the second law of thermodynamics through the medium of entropy.
Download or read book Handbook of Single Molecule Biophysics written by Peter Hinterdorfer and published by Springer. This book was released on 2016-08-23 with total page 626 pages. Available in PDF, EPUB and Kindle. Book excerpt: This handbook describes experimental techniques to monitor and manipulate individual biomolecules, including fluorescence detection, atomic force microscopy, and optical and magnetic trapping. It includes single-molecule studies of physical properties of biomolecules such as folding, polymer physics of protein and DNA, enzymology and biochemistry, single molecules in the membrane, and single-molecule techniques in living cells.
Download or read book The Conceptual Foundations of the Statistical Approach in Mechanics written by Paul Ehrenfest and published by Courier Corporation. This book was released on 1990-01-01 with total page 128 pages. Available in PDF, EPUB and Kindle. Book excerpt: Classic 1912 article reformulated the foundations of the statistical approach in mechanics. Largely still valid; essential reading for serious student. Covers older formulation of statistico-mechanical investigations (kineto-statistics of the molecule); modern formulation of kineto-statistics of gas model; work of W. Gibbs, and more. Extensive notes and prefatory material. Bibliography.
Download or read book Single Molecule Biophysics written by Tamiki Komatsuzaki and published by John Wiley & Sons. This book was released on 2011-11-16 with total page 403 pages. Available in PDF, EPUB and Kindle. Book excerpt: Discover the experimental and theoretical developments in optical single-molecule spectroscopy that are changing the ways we think about molecules and atoms The Advances in Chemical Physics series provides the chemical physics field with a forum for critical, authoritative evaluations of advances in every area of the discipline. This latest volume explores the advent of optical single-molecule spectroscopy, and how atomic force microscopy has empowered novel experiments on individual biomolecules, opening up new frontiers in molecular and cell biology and leading to new theoretical approaches and insights. Organized into two parts—one experimental, the other theoretical—this volume explores advances across the field of single-molecule biophysics, presenting new perspectives on the theoretical properties of atoms and molecules. Single-molecule experiments have provided fresh perspectives on questions such as how proteins fold to specific conformations from highly heterogeneous structures, how signal transductions take place on the molecular level, and how proteins behave in membranes and living cells.This volume is designed to further contribute to the rapid development of single-molecule biophysics research. Filled with cutting-edge research reported in a cohesive manner not found elsewhere in the literature, each volume of the Advances in Chemical Physics series serves as the perfect supplement to any advanced graduate class devoted to the study of chemical physics.
Download or read book A Concise Introduction to the Statistical Physics of Complex Systems written by Eric Bertin and published by Springer Science & Business Media. This book was released on 2011-09-28 with total page 85 pages. Available in PDF, EPUB and Kindle. Book excerpt: This concise primer (based on lectures given at summer schools on complex systems and on a masters degree course in complex systems modeling) will provide graduate students and newcomers to the field with the basic knowledge of the concepts and methods of statistical physics and its potential for application to interdisciplinary topics. Indeed, in recent years, statistical physics has begun to attract the interest of a broad community of researchers in the field of complex system sciences, ranging from biology to the social sciences, economics and computer science. More generally, a growing number of graduate students and researchers feel the need to learn some basic concepts and questions originating in other disciplines without necessarily having to master all of the corresponding technicalities and jargon. Generally speaking, the goals of statistical physics may be summarized as follows: on the one hand to study systems composed of a large number of interacting ‘entities’, and on the other to predict the macroscopic (or collective) behavior of the system considered from the microscopic laws ruling the dynamics of the individual ‘entities’. These two goals are, to some extent, also shared by what is nowadays called ‘complex systems science’ and for these reasons, systems studied in the framework of statistical physics may be considered as among the simplest examples of complex systems—allowing in addition a rather well developed mathematical treatment.
Download or read book Statistical Physics for Biological Matter written by Wokyung Sung and published by Springer. This book was released on 2018-10-19 with total page 444 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book aims to cover a broad range of topics in statistical physics, including statistical mechanics (equilibrium and non-equilibrium), soft matter and fluid physics, for applications to biological phenomena at both cellular and macromolecular levels. It is intended to be a graduate level textbook, but can also be addressed to the interested senior level undergraduate. The book is written also for those involved in research on biological systems or soft matter based on physics, particularly on statistical physics. Typical statistical physics courses cover ideal gases (classical and quantum) and interacting units of simple structures. In contrast, even simple biological fluids are solutions of macromolecules, the structures of which are very complex. The goal of this book to fill this wide gap by providing appropriate content as well as by explaining the theoretical method that typifies good modeling, namely, the method of coarse-grained descriptions that extract the most salient features emerging at mesoscopic scales. The major topics covered in this book include thermodynamics, equilibrium statistical mechanics, soft matter physics of polymers and membranes, non-equilibrium statistical physics covering stochastic processes, transport phenomena and hydrodynamics. Generic methods and theories are described with detailed derivations, followed by applications and examples in biology. The book aims to help the readers build, systematically and coherently through basic principles, their own understanding of nonspecific concepts and theoretical methods, which they may be able to apply to a broader class of biological problems.
Download or read book Entropy and Free Energy in Structural Biology written by Hagai Meirovitch and published by CRC Press. This book was released on 2020-08-14 with total page 374 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computer simulation has become the main engine of development in statistical mechanics. In structural biology, computer simulation constitutes the main theoretical tool for structure determination of proteins and for calculation of the free energy of binding, which are important in drug design. Entropy and Free Energy in Structural Biology leads the reader to the simulation technology in a systematic way. The book, which is structured as a course, consists of four parts: Part I is a short course on probability theory emphasizing (1) the distinction between the notions of experimental probability, probability space, and the experimental probability on a computer, and (2) elaborating on the mathematical structure of product spaces. These concepts are essential for solving probability problems and devising simulation methods, in particular for calculating the entropy. Part II starts with a short review of classical thermodynamics from which a non-traditional derivation of statistical mechanics is devised. Theoretical aspects of statistical mechanics are reviewed extensively. Part III covers several topics in non-equilibrium thermodynamics and statistical mechanics close to equilibrium, such as Onsager relations, the two Fick's laws, and the Langevin and master equations. The Monte Carlo and molecular dynamics procedures are discussed as well. Part IV presents advanced simulation methods for polymers and protein systems, including techniques for conformational search and for calculating the potential of mean force and the chemical potential. Thermodynamic integration, methods for calculating the absolute entropy, and methodologies for calculating the absolute free energy of binding are evaluated. Enhanced by a number of solved problems and examples, this volume will be a valuable resource to advanced undergraduate and graduate students in chemistry, chemical engineering, biochemistry biophysics, pharmacology, and computational biology.
