Download or read book Simulating Analyzing and Animating Dynamical Systems written by Bard Ermentrout and published by SIAM. This book was released on 2002-01-01 with total page 298 pages. Available in PDF, EPUB and Kindle. Book excerpt: Simulating, Analyzing, and Animating Dynamical Systems: A Guide to XPPAUT for Researchers and Students provides sophisticated numerical methods for the fast and accurate solution of a variety of equations, including ordinary differential equations, delay equations, integral equations, functional equations, and some partial differential equations, as well as boundary value problems. It introduces many modeling techniques and methods for analyzing the resulting equations. Instructors, students, and researchers will all benefit from this book, which demonstrates how to use software tools to simulate and study sets of equations that arise in a variety of applications. Instructors will learn how to use computer software in their differential equations and modeling classes, while students will learn how to create animations of their equations that can be displayed on the World Wide Web. Researchers will be introduced to useful tricks that will allow them to take full advantage of XPPAUT's capabilities.

Download or read book Simulating Analyzing and Animating Dynamical Systems written by Bard Ermentrout and published by SIAM. This book was released on 2002-01-01 with total page 304 pages. Available in PDF, EPUB and Kindle. Book excerpt: Simulating, Analyzing, and Animating Dynamical Systems: A Guide to XPPAUT for Researchers and Students provides sophisticated numerical methods for the fast and accurate solution of a variety of equations, including ordinary differential equations, delay equations, integral equations, functional equations, and some partial differential equations, as well as boundary value problems. It introduces many modeling techniques and methods for analyzing the resulting equations.

Download or read book Numerical Continuation Methods for Dynamical Systems written by Bernd Krauskopf and published by Springer. This book was released on 2007-11-06 with total page 411 pages. Available in PDF, EPUB and Kindle. Book excerpt: Path following in combination with boundary value problem solvers has emerged as a continuing and strong influence in the development of dynamical systems theory and its application. It is widely acknowledged that the software package AUTO - developed by Eusebius J. Doedel about thirty years ago and further expanded and developed ever since - plays a central role in the brief history of numerical continuation. This book has been compiled on the occasion of Sebius Doedel's 60th birthday. Bringing together for the first time a large amount of material in a single, accessible source, it is hoped that the book will become the natural entry point for researchers in diverse disciplines who wish to learn what numerical continuation techniques can achieve. The book opens with a foreword by Herbert B. Keller and lecture notes by Sebius Doedel himself that introduce the basic concepts of numerical bifurcation analysis. The other chapters by leading experts discuss continuation for various types of systems and objects and showcase examples of how numerical bifurcation analysis can be used in concrete applications. Topics that are treated include: interactive continuation tools, higher-dimensional continuation, the computation of invariant manifolds, and continuation techniques for slow-fast systems, for symmetric Hamiltonian systems, for spatially extended systems and for systems with delay. Three chapters review physical applications: the dynamics of a SQUID, global bifurcations in laser systems, and dynamics and bifurcations in electronic circuits.

Download or read book Dynamical Systems PDEs and Networks for Biomedical Applications Mathematical Modeling Analysis and Simulations written by André H. Erhardt and published by Frontiers Media SA. This book was released on 2023-02-15 with total page 209 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Numerical Methods for Bifurcations of Dynamical Equilibria written by Willy J. F. Govaerts and published by SIAM. This book was released on 2000-01-01 with total page 384 pages. Available in PDF, EPUB and Kindle. Book excerpt: Dynamical systems arise in all fields of applied mathematics. The author focuses on the description of numerical methods for the detection, computation, and continuation of equilibria and bifurcation points of equilibria of dynamical systems. This subfield has the particular attraction of having links with the geometric theory of differential equations, numerical analysis, and linear algebra.

Download or read book Dynamical Systems in Neuroscience written by Eugene M. Izhikevich and published by MIT Press. This book was released on 2010-01-22 with total page 459 pages. Available in PDF, EPUB and Kindle. Book excerpt: Explains the relationship of electrophysiology, nonlinear dynamics, and the computational properties of neurons, with each concept presented in terms of both neuroscience and mathematics and illustrated using geometrical intuition. In order to model neuronal behavior or to interpret the results of modeling studies, neuroscientists must call upon methods of nonlinear dynamics. This book offers an introduction to nonlinear dynamical systems theory for researchers and graduate students in neuroscience. It also provides an overview of neuroscience for mathematicians who want to learn the basic facts of electrophysiology. Dynamical Systems in Neuroscience presents a systematic study of the relationship of electrophysiology, nonlinear dynamics, and computational properties of neurons. It emphasizes that information processing in the brain depends not only on the electrophysiological properties of neurons but also on their dynamical properties. The book introduces dynamical systems, starting with one- and two-dimensional Hodgkin-Huxley-type models and continuing to a description of bursting systems. Each chapter proceeds from the simple to the complex, and provides sample problems at the end. The book explains all necessary mathematical concepts using geometrical intuition; it includes many figures and few equations, making it especially suitable for non-mathematicians. Each concept is presented in terms of both neuroscience and mathematics, providing a link between the two disciplines. Nonlinear dynamical systems theory is at the core of computational neuroscience research, but it is not a standard part of the graduate neuroscience curriculum—or taught by math or physics department in a way that is suitable for students of biology. This book offers neuroscience students and researchers a comprehensive account of concepts and methods increasingly used in computational neuroscience. An additional chapter on synchronization, with more advanced material, can be found at the author's website, www.izhikevich.com.

Download or read book Computational Electrophysiology written by Shinji Doi and published by Springer Science & Business Media. This book was released on 2010-03-10 with total page 159 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biological systems inherently possess much ambiguity or uncertainty. Computational electrophysiology is the one area, from among the vast and rapidly growing discipline of computational and systems biology, in which computational or mathematical models have succeeded. This textbook provides a practical and quick guide to both computational electrophysiology and numerical bifurcation analysis. Bifurcation analysis is a very powerful tool for the analysis of such highly nonlinear biological systems. Bifurcation theory provides a way to analyze the effect of a parameter change on a system and to detect a critical parameter value when the qualitative nature of the system changes. Included in this work are many examples of numerical computations of bifurcation analysis of various models as well as mathematical models with different abstraction levels from neuroscience and electrophysiology. This volume will benefit graduate and undergraduate students as well as researchers in diverse fields of science.

Download or read book Computational Intelligence in Bioinformatics written by Arpad Kelemen and published by Springer Science & Business Media. This book was released on 2008-01-03 with total page 337 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bioinformatics involve the creation and advancement of algorithms using techniques including computational intelligence, applied mathematics and statistics, informatics, and biochemistry to solve biological problems usually on the molecular level. This book deals with the application of computational intelligence in bioinformatics. Addressing the various issues of bioinformatics using different computational intelligence approaches is the novelty of this edited volume.

Download or read book Controlling Delayed Dynamics written by Dimitri Breda and published by Springer Nature. This book was released on 2022-09-19 with total page 369 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book gathers contributions on analytical, numerical, and application aspects of time-delay systems, under the paradigm of control theory, and discusses recent advances in these different contexts, also highlighting the interdisciplinary connections. The book will serve as a useful tool for graduate students and researchers in the fields of dynamical systems, automatic control, numerical methods, and functional analysis.

Download or read book Modeling and Analysis of Bio molecular Networks written by Jinhu Lü and published by Springer Nature. This book was released on 2020-12-06 with total page 464 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book addresses a number of questions from the perspective of complex systems: How can we quantitatively understand the life phenomena? How can we model life systems as complex bio-molecular networks? Are there any methods to clarify the relationships among the structures, dynamics and functions of bio-molecular networks? How can we statistically analyse large-scale bio-molecular networks? Focusing on the modeling and analysis of bio-molecular networks, the book presents various sophisticated mathematical and statistical approaches. The life system can be described using various levels of bio-molecular networks, including gene regulatory networks, and protein-protein interaction networks. It first provides an overview of approaches to reconstruct various bio-molecular networks, and then discusses the modeling and dynamical analysis of simple genetic circuits, coupled genetic circuits, middle-sized and large-scale biological networks, clarifying the relationships between the structures, dynamics and functions of the networks covered. In the context of large-scale bio-molecular networks, it introduces a number of statistical methods for exploring important bioinformatics applications, including the identification of significant bio-molecules for network medicine and genetic engineering. Lastly, the book describes various state-of-art statistical methods for analysing omics data generated by high-throughput sequencing. This book is a valuable resource for readers interested in applying systems biology, dynamical systems or complex networks to explore the truth of nature.

Download or read book Case Studies in Systems Biology written by Pavel Kraikivski and published by Springer Nature. This book was released on 2021-10-06 with total page 310 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides case studies that can be used in Systems Biology related classes. Each case study has the same structure which answers the following questions: What is the biological problem and why is it interesting? What are the relevant details with regard to cell physiology and molecular mechanisms? How are the details put together into a mathematical model? How is the model analyzed and simulated? What are the results of the model? How do they compare to the known facts of the cell physiology? Does the model make predictions? What can be done to extend the model? The book presents a summary of results and references to more relevant sources. The volume contains the classic collection of topics and studies that are well established yet novel in the systems biology field.

Download or read book Bioinformatics Research and Development written by Sepp Hochreiter and published by Springer Science & Business Media. This book was released on 2007-02-28 with total page 496 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the First International Bioinformatics Research and Development Conference, BIRD 2007, held in Berlin, Germany in March 2007. The 36 revised full papers are organized in topical sections on microarray and systems biology and networks, medical, SNPs, genomics, systems biology, sequence analysis and coding, proteomics and structure, databases, Web and text analysis.

Download or read book Systems and Synthetic Biology written by Vikram Singh and published by Springer. This book was released on 2014-12-15 with total page 383 pages. Available in PDF, EPUB and Kindle. Book excerpt: This textbook has been conceptualized to provide a detailed description of the various aspects of Systems and Synthetic Biology, keeping the requirements of M.Sc. and Ph.D. students in mind. Also, it is hoped that this book will mentor young scientists who are willing to contribute to this area but do not know from where to begin. The book has been divided into two sections. The first section will deal with systems biology – in terms of the foundational understanding, highlighting issues in biological complexity, methods of analysis and various aspects of modelling. The second section deals with the engineering concepts, design strategies of the biological systems ranging from simple DNA/RNA fragments, switches and oscillators, molecular pathways to a complete synthetic cell will be described. Finally, the book will offer expert opinions in legal, safety, security and social issues to present a well-balanced information both for students and scientists.

Download or read book Nonlinear Ordinary Differential Equations written by Dominic Jordan and published by OUP Oxford. This book was released on 2007-08-24 with total page 540 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is a thoroughly updated and expanded 4th edition of the classic text Nonlinear Ordinary Differential Equations by Dominic Jordan and Peter Smith. Including numerous worked examples and diagrams, further exercises have been incorporated into the text and answers are provided at the back of the book. Topics include phase plane analysis, nonlinear damping, small parameter expansions and singular perturbations, stability, Liapunov methods, Poincare sequences, homoclinic bifurcation and Liapunov exponents. Over 500 end-of-chapter problems are also included and as an additional resource fully-worked solutions to these are provided in the accompanying text Nonlinear Ordinary Differential Equations: Problems and Solutions, (OUP, 2007). Both texts cover a wide variety of applications whilst keeping mathematical prequisites to a minimum making these an ideal resource for students and lecturers in engineering, mathematics and the sciences.

Download or read book Practical Bifurcation and Stability Analysis written by Rüdiger U. Seydel and published by Springer Science & Business Media. This book was released on 2009-11-27 with total page 493 pages. Available in PDF, EPUB and Kindle. Book excerpt: Probably the first book to describe computational methods for numerically computing steady state and Hopf bifurcations. Requiring only a basic knowledge of calculus, and using detailed examples, problems, and figures, this is an ideal textbook for graduate students.

Download or read book Multiple Aspects of DNA and RNA from Biophysics to Bioinformatics written by Didier Chatenay and published by Gulf Professional Publishing. This book was released on 2005-12-19 with total page 392 pages. Available in PDF, EPUB and Kindle. Book excerpt: Dedicated to the multiple aspects, that is, biological, physical and computational of DNA and RNA molecules, this book is divided into three main sections. It is intended to be a reference for advanced graduate students or young researchers to acquire an interdisciplinary understanding of the multiple aspects of DNA and RNA.

Download or read book Nonlinear Analysis in Neuroscience and Behavioral Research written by Tobias A. Mattei and published by Frontiers Media SA. This book was released on 2016-10-31 with total page 273 pages. Available in PDF, EPUB and Kindle. Book excerpt: Although nonlinear dynamics have been mastered by physicists and mathematicians for a long time (as most physical systems are inherently nonlinear in nature), the recent successful application of nonlinear methods to modeling and predicting several evolutionary, ecological, physiological, and biochemical processes has generated great interest and enthusiasm among researchers in computational neuroscience and cognitive psychology. Additionally, in the last years it has been demonstrated that nonlinear analysis can be successfully used to model not only basic cellular and molecular data but also complex cognitive processes and behavioral interactions. The theoretical features of nonlinear systems (such unstable periodic orbits, period-doubling bifurcations and phase space dynamics) have already been successfully applied by several research groups to analyze the behavior of a variety of neuronal and cognitive processes. Additionally the concept of strange attractors has lead to a new understanding of information processing which considers higher cognitive functions (such as language, attention, memory and decision making) as complex systems emerging from the dynamic interaction between parallel streams of information flowing between highly interconnected neuronal clusters organized in a widely distributed circuit and modulated by key central nodes. Furthermore, the paradigm of self-organization derived from the nonlinear dynamics theory has offered an interesting account of the phenomenon of emergence of new complex cognitive structures from random and non-deterministic patterns, similarly to what has been previously observed in nonlinear studies of fluid dynamics. Finally, the challenges of coupling massive amount of data related to brain function generated from new research fields in experimental neuroscience (such as magnetoencephalography, optogenetics and single-cell intra-operative recordings of neuronal activity) have generated the necessity of new research strategies which incorporate complex pattern analysis as an important feature of their algorithms. Up to now nonlinear dynamics has already been successfully employed to model both basic single and multiple neurons activity (such as single-cell firing patterns, neural networks synchronization, autonomic activity, electroencephalographic measurements, and noise modulation in the cerebellum), as well as higher cognitive functions and complex psychiatric disorders. Similarly, previous experimental studies have suggested that several cognitive functions can be successfully modeled with basis on the transient activity of large-scale brain networks in the presence of noise. Such studies have demonstrated that it is possible to represent typical decision-making paradigms of neuroeconomics by dynamic models governed by ordinary differential equations with a finite number of possibilities at the decision points and basic heuristic rules which incorporate variable degrees of uncertainty. This e-book has include frontline research in computational neuroscience and cognitive psychology involving applications of nonlinear analysis, especially regarding the representation and modeling of complex neural and cognitive systems. Several experts teams around the world have provided frontline theoretical and experimental contributions (as well as reviews, perspectives and commentaries) in the fields of nonlinear modeling of cognitive systems, chaotic dynamics in computational neuroscience, fractal analysis of biological brain data, nonlinear dynamics in neural networks research, nonlinear and fuzzy logics in complex neural systems, nonlinear analysis of psychiatric disorders and dynamic modeling of sensorimotor coordination. Rather than a comprehensive compilation of the possible topics in neuroscience and cognitive research to which non-linear may be used, this e-book intends to provide some illustrative examples of the broad range of