Download or read book Relevance of Translational Regulation on Plant Growth and Environmental Responses written by Alejandro Ferrando and published by Frontiers Media SA. This book was released on 2018-02-19 with total page 138 pages. Available in PDF, EPUB and Kindle. Book excerpt: Plants, as sessile organisms, are exposed to a large array of challenging external and internal alterations that may restrict plant growth. These limiting growth conditions activate plant signalling responses which eventually target the protein synthesis machinery to rapidly reprogram plant metabolism to adapt to the new situation. Thus, the control of mRNA translation is one key regulatory step of gene expression and it is an essential molecular mechanism used by plants to bring about impressive growth plasticity. Compared to the vast number of studies aimed to identify plant transcriptional changes upon hormonal or environmental cues, the subsequent steps of mRNA transport, stability, storage, and eventually translational regulation, have been less studied in plants. This lack of knowledge concerns not only the fate of protein-coding transcripts in plants, but also the biogenesis and maturation of rRNAs, tRNAs and the plant translation factors involved. In this eBook we have focused on how internal cues and external signals of either biotic or abiotic origin impact translation to adjust plant growth and development. We have collected altogether ten scientific contributions to extend the knowledge on plant post-transcriptional and translational events that regulate the production of proteins that execute the required cellular functions. We hope that this compilation of original research articles and reviews will provide the readers with a detailed update on the state of knowledge in this field, and also with additional motivation to improve plant growth adaptation to future environmental challenges.
Download or read book Relevance of Translational Regulation on Plant Growth and Environmental Responses written by and published by . This book was released on 2018 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Plants, as sessile organisms, are exposed to a large array of challenging external and internal alterations that may restrict plant growth. These limiting growth conditions activate plant signalling responses which eventually target the protein synthesis machinery to rapidly reprogram plant metabolism to adapt to the new situation. Thus, the control of mRNA translation is one key regulatory step of gene expression and it is an essential molecular mechanism used by plants to bring about impressive growth plasticity. Compared to the vast number of studies aimed to identify plant transcriptional changes upon hormonal or environmental cues, the subsequent steps of mRNA transport, stability, storage, and eventually translational regulation, have been less studied in plants. This lack of knowledge concerns not only the fate of protein-coding transcripts in plants, but also the biogenesis and maturation of rRNAs, tRNAs and the plant translation factors involved. In this eBook we have focused on how internal cues and external signals of either biotic or abiotic origin impact translation to adjust plant growth and development. We have collected altogether ten scientific contributions to extend the knowledge on plant post-transcriptional and translational events that regulate the production of proteins that execute the required cellular functions. We hope that this compilation of original research articles and reviews will provide the readers with a detailed update on the state of knowledge in this field, and also with additional motivation to improve plant growth adaptation to future environmental challenges.
Download or read book Role of RNA Binding Proteins and Post transcriptional Regulation in Response to Environmental Changes in Arabidopsis Thaliana written by Piyada Juntawong and published by . This book was released on 2010 with total page 221 pages. Available in PDF, EPUB and Kindle. Book excerpt: Light and temperature are two of the most important factors that regulate plant growth and development. The adaptation to alterations in light and temperature involves programed changes in gene expression that are necessary for physiological and morphological adaptations. Transcript abundance is frequently used to monitor changes in gene expression in response to sub-optimal growth conditions. However, transcript accumulation may not accurately mirror gene expression due to extensive post-transcriptional and post-translational regulation. In this dissertation, the significance in post-transcriptional regulation in response to unanticipated alterations in light availability was evaluated in seedlings of Arabidopsis thaliana. Early darkness resulted in translational inhibition and sequestration of a subset of cellular mRNAs. The translationally regulated mRNAs were enriched in transcripts encoding chloroplastic and protein synthesis machinery. The reduced engagement of the majority of these transcripts with ribosomes was rapidly reversed upon re-illumination. These results suggest that regulation of the translational status of chloroplastic and protein synthesis mRNAs may aid in energy conservation during unanticipated darkness. Towards the elucidation of RNA binding proteins that control selective mRNA translation, the complexes of Arabidopsis Cold Shock Proteins (CSPs 1-4) were characterized. Transgenic lines overexpressing epitope-tagged CSPs were established and used for cellular fractionation and mass spectrometric protein identification of immunopurified CSP complexes. Fluorescently-tagged CSPs and associated proteins were localized in transiently transformed cells by confocal microscopy. Together, the results of this survey indicate Arabidopsis CSPs are involved in multiple processes of post-transcriptional regulation, including pre-mRNA/rRNA processing and mRNA translation. Of the four CSPs, CSP1 co-fractionated with ribosome. A mild RNase A treatment of ribosome complexes combined with sucrose gradient fractionation confirmed that CSP1 is a polysomeassociated RNA binding protein. CSP1 accumulated under normal growth condition and was induced by low-temperature. A polyclonal antibody prepared to specifically recognize CSP1 protein was used to co-immunopurify native CSP1 complexes. DNA microarray hybridization was used to compare total (transcriptome), polysomal (translatome), and CSP1-associated mRNAs from plants grown under normal or lowtemperature conditions. The results demonstrate that CSP1 preferentially associated with mRNAs involved in RNA processing and protein synthesis. Many of the CSP1-associated mRNA also have high 5'-UTR with a high G+C content. The transcriptome and translatome adjustments during low-temperature stress were highly correlated, in contrast to the findings with early darkness. This work provides new perspectives on post-transcriptional gene regulation in response to environmental cues in Arabidopsis, as well as a foundation for future in-depth characterization of mRNA-RNP control networks in plants.
Download or read book Echinoderms Part B written by and published by Academic Press. This book was released on 2019-04-02 with total page 552 pages. Available in PDF, EPUB and Kindle. Book excerpt: Echinoderms, Volume 151, the latest release in the Methods in Cell Biology series, highlights advances in the field, with this update presenting chapters on Echinoderm Genome Databases, analysis of gene regulatory networks, using ATAC-seq and RNA-seq to increase resolution in GRN connectivity, multiplex cis-regulatory analysis, experimental approaches GRN/signal pathways, BACs, analysis of chromatin accessibility using ATAC-seq, analysis of sea urchin proteins /Click IT, CRISPR/Cas9-mediated genome editing in sea urchins, super-resolution and in toto imaging of echinoderm embryos, and methods for analysis of intracellular ion signals in sperm, eggs and embryos. Presents clear, concise protocols provided by experts who have established the echinoderms as a model systems Highlights new advances in the field, with this update presenting interesting chapters on echinoderms
Download or read book RNA Turnover in Eukaryotes Analysis of Specialized and Quality Control RNA Decay Pathways written by Lynne E. Maquat and published by Academic Press. This book was released on 2008-12-29 with total page 464 pages. Available in PDF, EPUB and Kindle. Book excerpt: Specific complexes of protein and RNA carry out many essential biological functions, including RNA processing, RNA turnover, and RNA folding, as well as the translation of genetic information from mRNA into protein sequences. Messenger RNA (mRNA) decay is now emerging as an important control point and a major contributor to gene expression. Continuing identification of the protein factors and cofactors and mRNA instability elements responsible for mRNA decay allow researchers to build a comprehensive picture of the highly orchestrated processes involved in mRNA decay and its regulation. * Covers the nonsense-mediated mRNA decay (NMD) or mRNA surveillance pathway * Expert researchers introduce the most advanced technologies and techniques * Offers step-by-step lab instructions, including necessary equipment and reagents
Download or read book Abscisic Acid in Plants written by and published by Academic Press. This book was released on 2019-11-21 with total page 386 pages. Available in PDF, EPUB and Kindle. Book excerpt: Abscisic Acid in Plants, Volume 92, the latest release in the Advances in Botanical Research series, is a compilation of the current state-of-the-art on the topic. Chapters in this new release comprehensively describe latest knowledge on how ABA functions as a plant hormone. They cover topics related to molecular mechanisms as well as the biochemical and chemical aspects of ABA action: hormone biosynthesis, catabolism, transport, perception, signaling in plants, seeds and in response to biotic and abiotic stresses, hormone evolution and chemical biology, and much more. Presents the latest release in the Advances in Botanical Research series Provides an Ideal resource for post-graduates and researchers in the plant sciences, including plant physiology, plant genetics, plant biochemistry, plant pathology, and plant evolution Contains contributions from internationally recognized authorities in their respective fields
Download or read book Transcription Factor Regulatory Networks written by Etsuko Miyamoto-Sato and published by Humana. This book was released on 2014-06-14 with total page 220 pages. Available in PDF, EPUB and Kindle. Book excerpt: Transcription Factor Regulatory Methods details various techniques ranging from cutting-edge to general techniques use to study transcription factor regulatory networks. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols and key tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Transcription Factor Regulatory Methods aids scientists in the further study into post-genomic or the personal genomic era.
Download or read book Plant RNA Biology written by Dóra Szakonyi and published by Frontiers Media SA. This book was released on 2019-11-18 with total page 167 pages. Available in PDF, EPUB and Kindle. Book excerpt: Discoveries from the past decades revealed that RNA molecules are much more than inert intermediates between the coding DNA sequences and their functional products, proteins. Today, RNAs are recognized as active regulatory molecules influencing gene expression, chromatin organization and genome stability, thus impacting all aspects of plant life including development, growth, reproduction and stress tolerance. Innovations in methodologies, the expanding application of next-generation sequencing technologies, and the creation of public datasets and databases have exposed a new universe of RNA-based mechanisms and led to the discovery of new families of non-coding RNAs, uncovered the large extent of alternative splicing events, and highlighted the potential roles of RNA modifications and RNA secondary structures. Furthermore, considerable advances have been made in identifying RNA-binding and processing factors involved in the synthesis and maturation of different forms of RNA molecules as well as in RNA processing, biochemical modifications or degradation. This Research Topic showcases the broad biological significance of RNAs in plant systems and contains eight original research articles, one review and four mini-reviews, covering various RNA-based mechanisms in higher plants. Emerging new technologies and novel multidisciplinary approaches are empowering the scientific community and will expectedly bring novel insights into our understanding of the mechanisms through which RNA is regulated and regulates biological processes in plant cells.
Download or read book The Plant Cell Cycle written by Dirk Inzé and published by Springer Science & Business Media. This book was released on 2011-06-27 with total page 240 pages. Available in PDF, EPUB and Kindle. Book excerpt: In recent years, the study of the plant cell cycle has become of major interest, not only to scientists working on cell division sensu strictu , but also to scientists dealing with plant hormones, development and environmental effects on growth. The book The Plant Cell Cycle is a very timely contribution to this exploding field. Outstanding contributors reviewed, not only knowledge on the most important classes of cell cycle regulators, but also summarized the various processes in which cell cycle control plays a pivotal role. The central role of the cell cycle makes this book an absolute must for plant molecular biologists.
Download or read book Vernalization and Flowering Time Celebrating 20 Years of FLC written by Richard Amasino and published by Frontiers Media SA. This book was released on 2021-11-30 with total page 183 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Evolution of the Protein Synthesis Machinery and Its Regulation written by Greco Hernández and published by Springer. This book was released on 2016-08-10 with total page 564 pages. Available in PDF, EPUB and Kindle. Book excerpt: The “omics” era has given a new perspective to the findings on the origin and evolution of the process of translation. This book provides insight into the evolution of the translation process and machinery from a modern perspective. Written by leading experts in molecular biology, this text looks into the origins and evolution of the protein synthetic machinery.
Download or read book Structure Function and Regulation of TOR complexes from Yeasts to Mammals written by and published by Academic Press. This book was released on 2010-03-13 with total page 421 pages. Available in PDF, EPUB and Kindle. Book excerpt: Cell growth is highly regulated and is controlled by the TOR signaling network. Dysfunction of signaling pathways controlling cell growth results in cells of altered sizes and in turn causes developmental errors and a wide range of pathological conditions. An understanding of the TOR signaling network may lead to novel drugs for the treatment of, for example, cancer, diabetes, inflammation, muscle atrophy, learning disabilities, depression, obesity and aging. There has been an explosion of knowledge in this area in recent years and this volume provides an in-depth review of our current knowledge of TOR complexes by the leaders in the field. Contributions from leading authorities Informs and updates on all the latest developments in the field
Download or read book Plant Circadian Networks written by Dorothee Staiger and published by Humana. This book was released on 2016-08-23 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Plant Circadian Networks: Methods and Protocols provides a collection of protocols to investigate clock-controlled parameters including transcript and small RNA levels, promoter activity using luciferase reporters, protein levels and posttranslational modification, protein-protein interaction, in vivo DNA-protein interaction and RNA-protein interaction, cellular redox state, Ca2+ levels, and innate immune responses. Furthermore, the use of bioinformatics resources is described to evaluate high throughput data sets and to integrate the data into an overarching picture of circadian networks in the cell. Additional chapters focus on seasonal processes like flowering time control, and techniques on trees, moss and algae. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and key tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Plant Circadian Networks: Methods and Protocols is designed not only for the chronobiology community dealing with circadian biology but also for the plant community in general.
Download or read book Regulation of Photosynthesis written by Eva-Mari Aro and published by Springer Science & Business Media. This book was released on 2006-04-11 with total page 624 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book covers the expression of photosynthesis related genes including regulation both at transcriptional and translational levels. It reviews biogenesis, turnover, and senescence of thylakoid pigment protein complexes and highlights some crucial regulatory steps in carbon metabolism.
Download or read book Heat Stress Tolerance in Plants written by Shabir H. Wani and published by John Wiley & Sons. This book was released on 2020-04-06 with total page 315 pages. Available in PDF, EPUB and Kindle. Book excerpt: Demystifies the genetic, biochemical, physiological, and molecular mechanisms underlying heat stress tolerance in plants Heat stress—when high temperatures cause irreversible damage to plant function or development—severely impairs the growth and yield of agriculturally important crops. As the global population mounts and temperatures continue to rise, it is crucial to understand the biochemical, physiological, and molecular mechanisms of thermotolerance to develop ‘climate-smart’ crops. Heat Stress Tolerance in Plants provides a holistic, cross-disciplinary survey of the latest science in this important field. Presenting contributions from an international team of plant scientists and researchers, this text examines heat stress, its impact on crop plants, and various mechanisms to modulate tolerance levels. Topics include recent advances in molecular genetic approaches to increasing heat tolerance, the potential role of biochemical and molecular markers in screening germplasm for thermotolerance, and the use of next-generation sequencing to unravel the novel genes associated with defense and metabolite pathways. This insightful book: Places contemporary research on heat stress in plants within the context of global climate change and population growth Includes diverse analyses from physiological, biochemical, molecular, and genetic perspectives Explores various approaches to increasing heat tolerance in crops of high commercial value, such as cotton Discusses the applications of plant genomics in the development of thermotolerant ‘designer crops’ An important contribution to the field, Heat Stress Tolerance in Plants is an invaluable resource for scientists, academics, students, and researchers working in fields of pulse crop biochemistry, physiology, genetics, breeding, and biotechnology.
Download or read book Signaling in Plants written by František Baluška and published by Springer Science & Business Media. This book was released on 2009-02-27 with total page 307 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is the first comprehensive monograph on all emerging topics in plant signaling. The book addresses diverse aspects of signaling at all levels of plant organization. Emphasis is placed on the integrative aspects of signaling.
Download or read book Plastid Biology written by Steven M. Theg and published by Springer. This book was released on 2014-09-19 with total page 585 pages. Available in PDF, EPUB and Kindle. Book excerpt: Plastids are the sites of conversion of solar energy into the chemical energy usable to sustain life. They are also responsible for the production of the vast majority of the oxygen in the atmosphere. Through these activities they play a unique role in the biosphere, producing two critical products upon which life on Earth depends. It covers in 21 chapters nearly all actively investigated areas of plastid biology, from biosynthesis to function to their uses in biotechnology. The editors have compiled an extensive list of international experts from whom to solicit chapters. As is evident from the suggested Table of Contents, the book will start with a discussion of genetic material and its expression, followed by differentiation and development of different plastid types and internal organization. This is followed by an in depth look at biogenesis and assembly of plastid proteins and protein complexes and then by the important metabolic functions in plastids. The book will end with two chapters discussing the role of plastid biology in protein expression biotechnology and in hydrogen and biofuel production.
