Download or read book R Markdown Cookbook written by Yihui Xie and published by CRC Press. This book was released on 2020-10-21 with total page 353 pages. Available in PDF, EPUB and Kindle. Book excerpt: This new book written by the developers of R Markdown is an essential reference that will help users learn and make full use of the software. Those new to R Markdown will appreciate the short, practical examples that address the most common issues users encounter. Frequent users will also benefit from the wide ranging tips and tricks that expose ‘hidden’ features, support customization and demonstrate the many new and varied applications of the software. After reading this book users will learn how to: Enhance your R Markdown content with diagrams, citations, and dynamically generated text Streamline your workflow with child documents, code chunk references, and caching Control the formatting and layout with Pandoc markdown syntax or by writing custom HTML and LaTeX templates Utilize chunk options and hooks to fine-tune how your code is processed Switch between different language engineers to seamlessly incorporate python, D3, and more into your analysis

Download or read book R Markdown written by Yihui Xie and published by CRC Press. This book was released on 2018-07-27 with total page 323 pages. Available in PDF, EPUB and Kindle. Book excerpt: R Markdown: The Definitive Guide is the first official book authored by the core R Markdown developers that provides a comprehensive and accurate reference to the R Markdown ecosystem. With R Markdown, you can easily create reproducible data analysis reports, presentations, dashboards, interactive applications, books, dissertations, websites, and journal articles, while enjoying the simplicity of Markdown and the great power of R and other languages. In this book, you will learn Basics: Syntax of Markdown and R code chunks, how to generate figures and tables, and how to use other computing languages Built-in output formats of R Markdown: PDF/HTML/Word/RTF/Markdown documents and ioslides/Slidy/Beamer/PowerPoint presentations Extensions and applications: Dashboards, Tufte handouts, xaringan/reveal.js presentations, websites, books, journal articles, and interactive tutorials Advanced topics: Parameterized reports, HTML widgets, document templates, custom output formats, and Shiny documents. Yihui Xie is a software engineer at RStudio. He has authored and co-authored several R packages, including knitr, rmarkdown, bookdown, blogdown, shiny, xaringan, and animation. He has published three other books, Dynamic Documents with R and knitr, bookdown: Authoring Books and Technical Documents with R Markdown, and blogdown: Creating Websites with R Markdown. J.J. Allaire is the founder of RStudio and the creator of the RStudio IDE. He is an author of several packages in the R Markdown ecosystem including rmarkdown, flexdashboard, learnr, and radix. Garrett Grolemund is the co-author of R for Data Science and author of Hands-On Programming with R. He wrote the lubridate R package and works for RStudio as an advocate who trains engineers to do data science with R and the Tidyverse.

Download or read book bookdown written by Yihui Xie and published by CRC Press. This book was released on 2016-12-12 with total page 140 pages. Available in PDF, EPUB and Kindle. Book excerpt: bookdown: Authoring Books and Technical Documents with R Markdown presents a much easier way to write books and technical publications than traditional tools such as LaTeX and Word. The bookdown package inherits the simplicity of syntax and flexibility for data analysis from R Markdown, and extends R Markdown for technical writing, so that you can make better use of document elements such as figures, tables, equations, theorems, citations, and references. Similar to LaTeX, you can number and cross-reference these elements with bookdown. Your document can even include live examples so readers can interact with them while reading the book. The book can be rendered to multiple output formats, including LaTeX/PDF, HTML, EPUB, and Word, thus making it easy to put your documents online. The style and theme of these output formats can be customized. We used books and R primarily for examples in this book, but bookdown is not only for books or R. Most features introduced in this book also apply to other types of publications: journal papers, reports, dissertations, course handouts, study notes, and even novels. You do not have to use R, either. Other choices of computing languages include Python, C, C++, SQL, Bash, Stan, JavaScript, and so on, although R is best supported. You can also leave out computing, for example, to write a fiction. This book itself is an example of publishing with bookdown and R Markdown, and its source is fully available on GitHub.

Download or read book R Markdown Cookbook written by Yihui Xie and published by CRC Press. This book was released on 2020-10-30 with total page 360 pages. Available in PDF, EPUB and Kindle. Book excerpt: R Markdown is a powerful tool for combining analysis and reporting into the single document in the spirit of literate programming and reproducible research. Since the birth of the rmarkdown package in early 2014, R Markdown has grown substantially from a package that supports a few output formats (such as HTML, PDF, and Word) to an extensive and diverse ecosystem that enables the creation of books, blogs, scientific articles, websites, and more. Due to its rapid success, this ecosystem is hard to learn completely meaning that R Markdown users, from novices to advanced users, likely do not know all that these packages have to offer. The R Markdown Cookbook confronts this gap by showcasing short, practical examples of wide-ranging tips and tricks to get the most out of these tools. After reading this book, you will learn how to: Enhance your R Markdown content with diagrams, citations, and dynamically generated text Streamline your workflow with child documents, code chunk references, and caching Control the formatting and layout with Pandoc markdown syntax or by writing custom HTML and LaTeX templates Utilize chunk options and hooks to fine-tune how your code is processed Switch between different language engineers to seamlessly incorporate python, D3, and more into your analysis

Download or read book R Bioinformatics Cookbook written by Dan MacLean and published by Packt Publishing Ltd. This book was released on 2019-10-11 with total page 307 pages. Available in PDF, EPUB and Kindle. Book excerpt: Over 60 recipes to model and handle real-life biological data using modern libraries from the R ecosystem Key FeaturesApply modern R packages to handle biological data using real-world examplesRepresent biological data with advanced visualizations suitable for research and publicationsHandle real-world problems in bioinformatics such as next-generation sequencing, metagenomics, and automating analysesBook Description Handling biological data effectively requires an in-depth knowledge of machine learning techniques and computational skills, along with an understanding of how to use tools such as edgeR and DESeq. With the R Bioinformatics Cookbook, you’ll explore all this and more, tackling common and not-so-common challenges in the bioinformatics domain using real-world examples. This book will use a recipe-based approach to show you how to perform practical research and analysis in computational biology with R. You will learn how to effectively analyze your data with the latest tools in Bioconductor, ggplot, and tidyverse. The book will guide you through the essential tools in Bioconductor to help you understand and carry out protocols in RNAseq, phylogenetics, genomics, and sequence analysis. As you progress, you will get up to speed with how machine learning techniques can be used in the bioinformatics domain. You will gradually develop key computational skills such as creating reusable workflows in R Markdown and packages for code reuse. By the end of this book, you’ll have gained a solid understanding of the most important and widely used techniques in bioinformatic analysis and the tools you need to work with real biological data. What you will learnEmploy Bioconductor to determine differential expressions in RNAseq dataRun SAMtools and develop pipelines to find single nucleotide polymorphisms (SNPs) and IndelsUse ggplot to create and annotate a range of visualizationsQuery external databases with Ensembl to find functional genomics informationExecute large-scale multiple sequence alignment with DECIPHER to perform comparative genomicsUse d3.js and Plotly to create dynamic and interactive web graphicsUse k-nearest neighbors, support vector machines and random forests to find groups and classify dataWho this book is for This book is for bioinformaticians, data analysts, researchers, and R developers who want to address intermediate-to-advanced biological and bioinformatics problems by learning through a recipe-based approach. Working knowledge of R programming language and basic knowledge of bioinformatics are prerequisites.

Download or read book Blogdown written by Yihui Xie and published by CRC Press. This book was released on 2017-12-12 with total page 144 pages. Available in PDF, EPUB and Kindle. Book excerpt: blogdown: Creating Websites with R Markdown provides a practical guide for creating websites using the blogdown package in R. In this book, we show you how to use dynamic R Markdown documents to build static websites featuring R code (or other programming languages) with automatically rendered output such as graphics, tables, analysis results, and HTML widgets. The blogdown package is also suitable for technical writing with elements such as citations, footnotes, and LaTeX math. This makes blogdown an ideal platform for any website designed to communicate information about data science, data analysis, data visualization, or R programming. Note that blogdown is not just for blogging or sites about R; it can also be used to create general-purpose websites. By default, blogdown uses Hugo, a popular open-source static website generator, which provides a fast and flexible way to build your site content to be shared online. Other website generators like Jekyll and Hexo are also supported. In this book, you will learn how to: Build a website using the blogdown package; Create blog posts and other website content as dynamic documents that can be easily edited and updated; Customize Hugo templates to suit your site's needs; Publish your website online; Migrate your existing websites to blogdown and Hugo. Yihui Xie is a software engineer at RStudio. He has authored and co-authored several R packages, including knitr, rmarkdown, bookdown, blogdown, shiny, xaringan, and animation. He has published two other books, Dynamic Documents with R and knitr and bookdown: Authoring Books and Technical Documents with R Markdown. Amber Thomas is a data journalist and "maker" at the online publication of visual essays: The Pudding (https: //pudding.cool). Her educational background was marine biology, but she has a strong love of data analysis, visualization, and storytelling. Alison Presmanes Hill is an Associate Professor of Pediatrics at Oregon Health & Science University, where she teaches Computer Science courses on data analysis, data science, and visualization. Her research focuses on using computational methods to study the development of children with neurodevelopmental disorders, in particular Autism Spectrum Disorders.

Download or read book R Cookbook written by JD Long and published by "O'Reilly Media, Inc.". This book was released on 2019-06-21 with total page 600 pages. Available in PDF, EPUB and Kindle. Book excerpt: Perform data analysis with R quickly and efficiently with more than 275 practical recipes in this expanded second edition. The R language provides everything you need to do statistical work, but its structure can be difficult to master. These task-oriented recipes make you productive with R immediately. Solutions range from basic tasks to input and output, general statistics, graphics, and linear regression. Each recipe addresses a specific problem and includes a discussion that explains the solution and provides insight into how it works. If you’re a beginner, R Cookbook will help get you started. If you’re an intermediate user, this book will jog your memory and expand your horizons. You’ll get the job done faster and learn more about R in the process. Create vectors, handle variables, and perform basic functions Simplify data input and output Tackle data structures such as matrices, lists, factors, and data frames Work with probability, probability distributions, and random variables Calculate statistics and confidence intervals and perform statistical tests Create a variety of graphic displays Build statistical models with linear regressions and analysis of variance (ANOVA) Explore advanced statistical techniques, such as finding clusters in your data

Download or read book R Cookbook written by Paul Teetor and published by "O'Reilly Media, Inc.". This book was released on 2011-03-03 with total page 438 pages. Available in PDF, EPUB and Kindle. Book excerpt: With more than 200 practical recipes, this book helps you perform data analysis with R quickly and efficiently. The R language provides everything you need to do statistical work, but its structure can be difficult to master. This collection of concise, task-oriented recipes makes you productive with R immediately, with solutions ranging from basic tasks to input and output, general statistics, graphics, and linear regression. Each recipe addresses a specific problem, with a discussion that explains the solution and offers insight into how it works. If you’re a beginner, R Cookbook will help get you started. If you’re an experienced data programmer, it will jog your memory and expand your horizons. You’ll get the job done faster and learn more about R in the process. Create vectors, handle variables, and perform other basic functions Input and output data Tackle data structures such as matrices, lists, factors, and data frames Work with probability, probability distributions, and random variables Calculate statistics and confidence intervals, and perform statistical tests Create a variety of graphic displays Build statistical models with linear regressions and analysis of variance (ANOVA) Explore advanced statistical techniques, such as finding clusters in your data "Wonderfully readable, R Cookbook serves not only as a solutions manual of sorts, but as a truly enjoyable way to explore the R language—one practical example at a time."—Jeffrey Ryan, software consultant and R package author

Download or read book IPython Interactive Computing and Visualization Cookbook written by Cyrille Rossant and published by Packt Publishing Ltd. This book was released on 2014-09-25 with total page 899 pages. Available in PDF, EPUB and Kindle. Book excerpt: Intended to anyone interested in numerical computing and data science: students, researchers, teachers, engineers, analysts, hobbyists... Basic knowledge of Python/NumPy is recommended. Some skills in mathematics will help you understand the theory behind the computational methods.

Download or read book R for Data Science written by Hadley Wickham and published by "O'Reilly Media, Inc.". This book was released on 2016-12-12 with total page 521 pages. Available in PDF, EPUB and Kindle. Book excerpt: Learn how to use R to turn raw data into insight, knowledge, and understanding. This book introduces you to R, RStudio, and the tidyverse, a collection of R packages designed to work together to make data science fast, fluent, and fun. Suitable for readers with no previous programming experience, R for Data Science is designed to get you doing data science as quickly as possible. Authors Hadley Wickham and Garrett Grolemund guide you through the steps of importing, wrangling, exploring, and modeling your data and communicating the results. You'll get a complete, big-picture understanding of the data science cycle, along with basic tools you need to manage the details. Each section of the book is paired with exercises to help you practice what you've learned along the way. You'll learn how to: Wrangle—transform your datasets into a form convenient for analysis Program—learn powerful R tools for solving data problems with greater clarity and ease Explore—examine your data, generate hypotheses, and quickly test them Model—provide a low-dimensional summary that captures true "signals" in your dataset Communicate—learn R Markdown for integrating prose, code, and results

Download or read book Jupyter Cookbook written by Dan Toomey and published by Packt Publishing Ltd. This book was released on 2018-04-30 with total page 229 pages. Available in PDF, EPUB and Kindle. Book excerpt: Leverage the power of the popular Jupyter notebooks to simplify your data science tasks without any hassle Key Features Create and share interactive documents with live code, text and visualizations Integrate popular programming languages such as Python, R, Julia, Scala with Jupyter Develop your widgets and interactive dashboards with these innovative recipes Book Description Jupyter has garnered a strong interest in the data science community of late, as it makes common data processing and analysis tasks much simpler. This book is for data science professionals who want to master various tasks related to Jupyter to create efficient, easy-to-share, scientific applications. The book starts with recipes on installing and running the Jupyter Notebook system on various platforms and configuring the various packages that can be used with it. You will then see how you can implement different programming languages and frameworks, such as Python, R, Julia, JavaScript, Scala, and Spark on your Jupyter Notebook. This book contains intuitive recipes on building interactive widgets to manipulate and visualize data in real time, sharing your code, creating a multi-user environment, and organizing your notebook. You will then get hands-on experience with Jupyter Labs, microservices, and deploying them on the web. By the end of this book, you will have taken your knowledge of Jupyter to the next level to perform all key tasks associated with it. What you will learn Install Jupyter and configure engines for Python, R, Scala and more Access and retrieve data on Jupyter Notebooks Create interactive visualizations and dashboards for different scenarios Convert and share your dynamic codes using HTML, JavaScript, Docker, and more Create custom user data interactions using various Jupyter widgets Manage user authentication and file permissions Interact with Big Data to perform numerical computing and statistical modeling Get familiar with Jupyter's next-gen user interface - JupyterLab Who this book is for This cookbook is for data science professionals, developers, technical data analysts, and programmers who want to execute technical coding, visualize output, and do scientific computing in one tool. Prior understanding of data science concepts will be helpful, but not mandatory, to use this book.

Download or read book R for Data Science Cookbook written by Yu-Wei, Chiu (David Chiu) and published by Packt Publishing Ltd. This book was released on 2016-07-29 with total page 452 pages. Available in PDF, EPUB and Kindle. Book excerpt: Over 100 hands-on recipes to effectively solve real-world data problems using the most popular R packages and techniques About This Book Gain insight into how data scientists collect, process, analyze, and visualize data using some of the most popular R packages Understand how to apply useful data analysis techniques in R for real-world applications An easy-to-follow guide to make the life of data scientist easier with the problems faced while performing data analysis Who This Book Is For This book is for those who are already familiar with the basic operation of R, but want to learn how to efficiently and effectively analyze real-world data problems using practical R packages. What You Will Learn Get to know the functional characteristics of R language Extract, transform, and load data from heterogeneous sources Understand how easily R can confront probability and statistics problems Get simple R instructions to quickly organize and manipulate large datasets Create professional data visualizations and interactive reports Predict user purchase behavior by adopting a classification approach Implement data mining techniques to discover items that are frequently purchased together Group similar text documents by using various clustering methods In Detail This cookbook offers a range of data analysis samples in simple and straightforward R code, providing step-by-step resources and time-saving methods to help you solve data problems efficiently. The first section deals with how to create R functions to avoid the unnecessary duplication of code. You will learn how to prepare, process, and perform sophisticated ETL for heterogeneous data sources with R packages. An example of data manipulation is provided, illustrating how to use the “dplyr” and “data.table” packages to efficiently process larger data structures. We also focus on “ggplot2” and show you how to create advanced figures for data exploration. In addition, you will learn how to build an interactive report using the “ggvis” package. Later chapters offer insight into time series analysis on financial data, while there is detailed information on the hot topic of machine learning, including data classification, regression, clustering, association rule mining, and dimension reduction. By the end of this book, you will understand how to resolve issues and will be able to comfortably offer solutions to problems encountered while performing data analysis. Style and approach This easy-to-follow guide is full of hands-on examples of data analysis with R. Each topic is fully explained beginning with the core concept, followed by step-by-step practical examples, and concluding with detailed explanations of each concept used.

Download or read book Mastering Shiny written by Hadley Wickham and published by "O'Reilly Media, Inc.". This book was released on 2021-04-29 with total page 372 pages. Available in PDF, EPUB and Kindle. Book excerpt: Master the Shiny web framework—and take your R skills to a whole new level. By letting you move beyond static reports, Shiny helps you create fully interactive web apps for data analyses. Users will be able to jump between datasets, explore different subsets or facets of the data, run models with parameter values of their choosing, customize visualizations, and much more. Hadley Wickham from RStudio shows data scientists, data analysts, statisticians, and scientific researchers with no knowledge of HTML, CSS, or JavaScript how to create rich web apps from R. This in-depth guide provides a learning path that you can follow with confidence, as you go from a Shiny beginner to an expert developer who can write large, complex apps that are maintainable and performant. Get started: Discover how the major pieces of a Shiny app fit together Put Shiny in action: Explore Shiny functionality with a focus on code samples, example apps, and useful techniques Master reactivity: Go deep into the theory and practice of reactive programming and examine reactive graph components Apply best practices: Examine useful techniques for making your Shiny apps work well in production

Download or read book Fundamentals of Data Visualization written by Claus O. Wilke and published by O'Reilly Media. This book was released on 2019-03-18 with total page 390 pages. Available in PDF, EPUB and Kindle. Book excerpt: Effective visualization is the best way to communicate information from the increasingly large and complex datasets in the natural and social sciences. But with the increasing power of visualization software today, scientists, engineers, and business analysts often have to navigate a bewildering array of visualization choices and options. This practical book takes you through many commonly encountered visualization problems, and it provides guidelines on how to turn large datasets into clear and compelling figures. What visualization type is best for the story you want to tell? How do you make informative figures that are visually pleasing? Author Claus O. Wilke teaches you the elements most critical to successful data visualization. Explore the basic concepts of color as a tool to highlight, distinguish, or represent a value Understand the importance of redundant coding to ensure you provide key information in multiple ways Use the book’s visualizations directory, a graphical guide to commonly used types of data visualizations Get extensive examples of good and bad figures Learn how to use figures in a document or report and how employ them effectively to tell a compelling story

Download or read book R for Everyone written by Jared P. Lander and published by Addison-Wesley Professional. This book was released on 2017-06-13 with total page 1454 pages. Available in PDF, EPUB and Kindle. Book excerpt: Statistical Computation for Programmers, Scientists, Quants, Excel Users, and Other Professionals Using the open source R language, you can build powerful statistical models to answer many of your most challenging questions. R has traditionally been difficult for non-statisticians to learn, and most R books assume far too much knowledge to be of help. R for Everyone, Second Edition, is the solution. Drawing on his unsurpassed experience teaching new users, professional data scientist Jared P. Lander has written the perfect tutorial for anyone new to statistical programming and modeling. Organized to make learning easy and intuitive, this guide focuses on the 20 percent of R functionality you’ll need to accomplish 80 percent of modern data tasks. Lander’s self-contained chapters start with the absolute basics, offering extensive hands-on practice and sample code. You’ll download and install R; navigate and use the R environment; master basic program control, data import, manipulation, and visualization; and walk through several essential tests. Then, building on this foundation, you’ll construct several complete models, both linear and nonlinear, and use some data mining techniques. After all this you’ll make your code reproducible with LaTeX, RMarkdown, and Shiny. By the time you’re done, you won’t just know how to write R programs, you’ll be ready to tackle the statistical problems you care about most. Coverage includes Explore R, RStudio, and R packages Use R for math: variable types, vectors, calling functions, and more Exploit data structures, including data.frames, matrices, and lists Read many different types of data Create attractive, intuitive statistical graphics Write user-defined functions Control program flow with if, ifelse, and complex checks Improve program efficiency with group manipulations Combine and reshape multiple datasets Manipulate strings using R’s facilities and regular expressions Create normal, binomial, and Poisson probability distributions Build linear, generalized linear, and nonlinear models Program basic statistics: mean, standard deviation, and t-tests Train machine learning models Assess the quality of models and variable selection Prevent overfitting and perform variable selection, using the Elastic Net and Bayesian methods Analyze univariate and multivariate time series data Group data via K-means and hierarchical clustering Prepare reports, slideshows, and web pages with knitr Display interactive data with RMarkdown and htmlwidgets Implement dashboards with Shiny Build reusable R packages with devtools and Rcpp Register your product at informit.com/register for convenient access to downloads, updates, and corrections as they become available.

Download or read book RStudio for R Statistical Computing Cookbook written by Andrea Cirillo and published by Packt Publishing Ltd. This book was released on 2016-04-29 with total page 247 pages. Available in PDF, EPUB and Kindle. Book excerpt: Over 50 practical and useful recipes to help you perform data analysis with R by unleashing every native RStudio feature About This Book 54 useful and practical tasks to improve working systems Includes optimizing performance and reliability or uptime, reporting, system management tools, interfacing to standard data ports, and so on Offers 10-15 real-life, practical improvements for each user type Who This Book Is For This book is targeted at R statisticians, data scientists, and R programmers. Readers with R experience who are looking to take the plunge into statistical computing will find this Cookbook particularly indispensable. What You Will Learn Familiarize yourself with the latest advanced R console features Create advanced and interactive graphics Manage your R project and project files effectively Perform reproducible statistical analyses in your R projects Use RStudio to design predictive models for a specific domain-based application Use RStudio to effectively communicate your analyses results and even publish them to a blog Put yourself on the frontiers of data science and data monetization in R with all the tools that are needed to effectively communicate your results and even transform your work into a data product In Detail The requirement of handling complex datasets, performing unprecedented statistical analysis, and providing real-time visualizations to businesses has concerned statisticians and analysts across the globe. RStudio is a useful and powerful tool for statistical analysis that harnesses the power of R for computational statistics, visualization, and data science, in an integrated development environment. This book is a collection of recipes that will help you learn and understand RStudio features so that you can effectively perform statistical analysis and reporting, code editing, and R development. The first few chapters will teach you how to set up your own data analysis project in RStudio, acquire data from different data sources, and manipulate and clean data for analysis and visualization purposes. You'll get hands-on with various data visualization methods using ggplot2, and you will create interactive and multidimensional visualizations with D3.js. Additional recipes will help you optimize your code; implement various statistical models to manage large datasets; perform text analysis and predictive analysis; and master time series analysis, machine learning, forecasting; and so on. In the final few chapters, you'll learn how to create reports from your analytical application with the full range of static and dynamic reporting tools that are available in RStudio so that you can effectively communicate results and even transform them into interactive web applications. Style and approach RStudio is an open source Integrated Development Environment (IDE) for the R platform. The R programming language is used for statistical computing and graphics, which RStudio facilitates and enhances through its integrated environment. This Cookbook will help you learn to write better R code using the advanced features of the R programming language using RStudio. Readers will learn advanced R techniques to compute the language and control object evaluation within R functions. Some of the contents are: Accessing an API with R Substituting missing values by interpolation Performing data filtering activities R Statistical implementation for Geospatial data Developing shiny add-ins to expand RStudio functionalities Using GitHub with RStudio Modelling a recommendation engine with R Using R Markdown for static and dynamic reporting Curating a blog through RStudio Advanced statistical modelling with R and RStudio

Download or read book Handbook of Graphs and Networks in People Analytics written by Keith McNulty and published by CRC Press. This book was released on 2022-06-19 with total page 269 pages. Available in PDF, EPUB and Kindle. Book excerpt: Immediately implementable code, with extensive and varied illustrations of graph variants and layouts. Examples and exercises across a variety of real-life contexts including business, politics, education, social media and crime investigation. Dedicated chapter on graph visualization methods. Practical walkthroughs of common methodological uses: finding influential actors in groups, discovering hidden community structures, facilitating diverse interaction in organizations, detecting political alignment, determining what influences connection and attachment. Various downloadable data sets for use both in class and individual learning projects. Final chapter dedicated to individual or group project examples.