Download or read book Practical Guide to Life Science Databases written by Imad Abugessaisa and published by Springer Nature. This book was released on 2022-01-06 with total page 228 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides the latest information of life science databases that center in the life science research and drive the development of the field. It introduces the fundamental principles, rationales and methodologies of creating and updating life science databases. The book brings together expertise and renowned researchers in the field of life science databases and brings their experience and tools at the fingertips of the researcher. The book takes bottom-up approach to explain the structure, content and the usability of life science database. Detailed explanation of the content, structure, query and data retrieval are discussed to provide practical use of life science database and to enable the reader to use database and provided tools in practice. The readers will learn the necessary knowledge about the untapped opportunities available in life science databases and how it could be used so as to advance basic research and applied research findings and transforming them to the benefit of human life. Chapter 2 is available open access under a Creative Commons Attribution 4.0 International License via link.springer.com.
Download or read book Bioinformatics written by Hamid D. Ismail and published by CRC Press. This book was released on 2022-03-22 with total page 469 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bioinformatics: A Practical Guide to NCBI Databases and Sequence Alignments provides the basics of bioinformatics and in-depth coverage of NCBI databases, sequence alignment, and NCBI Sequence Local Alignment Search Tool (BLAST). As bioinformatics has become essential for life sciences, the book has been written specifically to address the need of a large audience including undergraduates, graduates, researchers, healthcare professionals, and bioinformatics professors who need to use the NCBI databases, retrieve data from them, and use BLAST to find evolutionarily related sequences, sequence annotation, construction of phylogenetic tree, and the conservative domain of a protein, to name just a few. Technical details of alignment algorithms are explained with a minimum use of mathematical formulas and with graphical illustrations. Key Features Provides readers with the most-used bioinformatics knowledge of bioinformatics databases and alignments including both theory and application via illustrations and worked examples. Discusses the use of Windows Command Prompt, Linux shell, R, and Python for both Entrez databases and BLAST. The companion website (http://www.hamiddi.com/instructors/) contains tutorials, R and Python codes, instructor materials including slides, exercises, and problems for students. This is the ideal textbook for bioinformatics courses taken by students of life sciences and for researchers wishing to develop their knowledge of bioinformatics to facilitate their own research.
Download or read book Data Mining Techniques for the Life Sciences written by Oliviero Carugo and published by Humana. This book was released on 2023-05-19 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: This third edition details new and updated methods and protocols on important databases and data mining tools. Chapters guides readers through archives of macromolecular sequences and three-dimensional structures, databases of protein-protein interactions, methods for prediction conformational disorder, mutant thermodynamic stability, aggregation, and drug response. Quality of structural data and their release, soft mechanics applications in biology, and protein flexibility are considered, too, together with pan-genome analyses, rational drug combination screening and Omics Deep Mining. Written in the format of the highly successful Methods in Molecular Biology series, each chapter includes an introduction to the topic, lists necessary materials, includes step-by-step, readily reproducible protocols. Authoritative and cutting-edge, Data Mining Techniques for the Life Sciences, Third Edition aims to be a practical guide to researches to help further their study in this field.
Download or read book Neuroscience Databases written by Rolf Kötter and published by Springer Science & Business Media. This book was released on 2003 with total page 340 pages. Available in PDF, EPUB and Kindle. Book excerpt: Neuroscience Databases: A Practical Guide is the first book providing a comprehensive overview of these increasingly important databases. This volume makes the results of the Human Genome Project and other recent large-scale initiatives in the neurosciences available to a wider community. It extends the scope of bioinformatics from the molecular to the cellular, microcircuitry and systems levels, dealing for the first time with complex neuroscientific issues and leading the way to a new culture of data sharing and data mining necessary to successfully tackle neuroscience questions. Aimed at the novice user who wants to access the data, it provides clear and concise instructions on how to download the available data sets and how to use the software with a minimum of technical detail with most chapters written by the database creators themselves. Key databases and topics include: -Neuroinformatics for C. Elegans; -Gene Expression Patterns; -Functional Analyses of Olfactory Receptors -Protein-Protein Interactions; -Web-Based Neuronal Archives; -Neuronal and Network Modeling; -Storage and Retrieval of Experimental Data for Biophysically Realistic Modeling; -Analysis of Spike Trains; -Neural Connectivity Patterns; -Software Tools for Neuroimaging; -Data Management, Inspection and Sharing.
Download or read book Principles of Database Management written by Wilfried Lemahieu and published by Cambridge University Press. This book was released on 2018-07-12 with total page 817 pages. Available in PDF, EPUB and Kindle. Book excerpt: Introductory, theory-practice balanced text teaching the fundamentals of databases to advanced undergraduates or graduate students in information systems or computer science.
Download or read book Using the Biological Literature written by Diane Schmidt and published by CRC Press. This book was released on 2014-04-14 with total page 362 pages. Available in PDF, EPUB and Kindle. Book excerpt: The biological sciences cover a broad array of literature types, from younger fields like molecular biology with its reliance on recent journal articles, genomic databases, and protocol manuals to classic fields such as taxonomy with its scattered literature found in monographs and journals from the past three centuries. Using the Biological Litera
Download or read book Using the Biological Literature written by Elisabeth B. Davis and published by CRC Press. This book was released on 1995-05-02 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Bioinformatics written by Andreas D. Baxevanis and published by John Wiley & Sons. This book was released on 2004-03-24 with total page 504 pages. Available in PDF, EPUB and Kindle. Book excerpt: "In this book, Andy Baxevanis and Francis Ouellette . . . haveundertaken the difficult task of organizing the knowledge in thisfield in a logical progression and presenting it in a digestibleform. And they have done an excellent job. This fine text will makea major impact on biological research and, in turn, on progress inbiomedicine. We are all in their debt." —Eric Lander from the Foreword Reviews from the First Edition "...provides a broad overview of the basic tools for sequenceanalysis ... For biologists approaching this subject for the firsttime, it will be a very useful handbook to keep on the shelf afterthe first reading, close to the computer." —Nature Structural Biology "...should be in the personal library of any biologist who usesthe Internet for the analysis of DNA and protein sequencedata." —Science "...a wonderful primer designed to navigate the novice throughthe intricacies of in scripto analysis ... The accomplished genesearcher will also find this book a useful addition to theirlibrary ... an excellent reference to the principles ofbioinformatics." —Trends in Biochemical Sciences This new edition of the highly successful Bioinformatics:A Practical Guide to the Analysis of Genes and Proteinsprovides a sound foundation of basic concepts, with practicaldiscussions and comparisons of both computational tools anddatabases relevant to biological research. Equipping biologists with the modern tools necessary to solvepractical problems in sequence data analysis, the Second Editioncovers the broad spectrum of topics in bioinformatics, ranging fromInternet concepts to predictive algorithms used on sequence,structure, and expression data. With chapters written by experts inthe field, this up-to-date reference thoroughly covers vitalconcepts and is appropriate for both the novice and the experiencedpractitioner. Written in clear, simple language, the book isaccessible to users without an advanced mathematical or computerscience background. This new edition includes: All new end-of-chapter Web resources, bibliographies, andproblem sets Accompanying Web site containing the answers to the problems,as well as links to relevant Web resources New coverage of comparative genomics, large-scale genomeanalysis, sequence assembly, and expressed sequence tags A glossary of commonly used terms in bioinformatics andgenomics Bioinformatics: A Practical Guide to the Analysis of Genesand Proteins, Second Edition is essential reading forresearchers, instructors, and students of all levels in molecularbiology and bioinformatics, as well as for investigators involvedin genomics, positional cloning, clinical research, andcomputational biology.
Download or read book Data Management written by Margaret E. Henderson and published by Rowman & Littlefield. This book was released on 2016-10-25 with total page 215 pages. Available in PDF, EPUB and Kindle. Book excerpt: Libraries organize information and data is information, so it is natural that librarians should help people who need to find, organize, use, or store data. Organizations need evidence for decision making; data provides that evidence. Inventors and creators build upon data collected by others. All around us, people need data. Librarians can help increase the relevance of their library to the research and education mission of their institution by learning more about data and how to manage it. Data Management will guide readers through: Understanding data management basics and best practices. Using the reference interview to help with data management Writing data management plans for grants. Starting and growing a data management service. Finding collaborators inside and outside the library. Collecting and using data in different disciplines.
Download or read book A Practical Guide to PubMed written by F. van Etten and published by Bohn Stafleu van Loghum. This book was released on 2009-10-29 with total page 160 pages. Available in PDF, EPUB and Kindle. Book excerpt: The guide that helps you to search quickly and efficiently in PubMed! A Practical Guide to PubMed is a guide that provides a clear overview of the many possibilities that PubMed has to offer. PubMed (www.pubmed.gov) provides free access to MEDLINE and is the most widely used medical search engine. In this completely revised edition of A Practical Guide to PubMed concise and clear chapters cover the following topics:• How do I formulate a good search questions?• What search options does PubMed offer and which search strategy provides me with the best results?• How can I broaden or narrow down search results?Faridi van Etten is employed at the medical library of the Academisch Medisch Centrum (Academic Medical Center) and regularly teaches courses on this topic. Rikie Deurenberg works as an information specialist at the Kwaliteitsinstituut voor de Gezondheidszorg (Dutch Institute for Healthcare Improvement) CBO.A Practical Guide to PubMed is a book that is indispensable to specialists, family doctors, company and insurance physicians, physical therapists and other paramedics, nursing staff and anyone who is in training for these professions.
Download or read book A Practical Guide to Using Glycomics Databases written by Kiyoko F. Aoki-Kinoshita and published by Springer. This book was released on 2016-12-06 with total page 362 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides glycoscientists with a handbook of useful databases that can be applied to glycoscience research. Although many databases are now publicly available, one of the hurdles for their users is the learning curve required to effectively utilize those databases. Therefore, this book not only describes the existing databases, but also provides tips on how to obtain the target data. That is, because many databases provide a variety of data that could be obtained from different perspectives, each chapter provides users with potential biological questions that can be answered by a particular database and step-by-step instructions, with figures, on how to obtain that data. Troubleshooting tips are also provided to aid users encountering problems that can be predicted when using these databases. Moreover, contact information for each database is provided in case unexpected issues arise.
Download or read book Bioinformatics written by Andreas D. Baxevanis and published by Wiley-Interscience. This book was released on 1998 with total page 396 pages. Available in PDF, EPUB and Kindle. Book excerpt: "A reference that should be in the personal library of any biologist who uses the Internet for the analysis of DNA and protein sequence data" --Science
Download or read book Concise Guide to Databases written by Peter Lake and published by . This book was released on 2013-12-31 with total page 328 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Spatial Database for GPS Wildlife Tracking Data written by Ferdinando Urbano and published by Springer Science & Business Media. This book was released on 2014-03-12 with total page 271 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book guides animal ecologists, biologists and wildlife and data managers through a step-by-step procedure to build their own advanced software platforms to manage and process wildlife tracking data. This unique, problem-solving-oriented guide focuses on how to extract the most from GPS animal tracking data, while preventing error propagation and optimizing analysis performance. Based on the open source PostgreSQL/PostGIS spatial database, the software platform will allow researchers and managers to integrate and harmonize GPS tracking data together with animal characteristics, environmental data sets, including remote sensing image time series, and other bio-logged data, such as acceleration data. Moreover, the book shows how the powerful R statistical environment can be integrated into the software platform, either connecting the database with R, or embedding the same tools in the database through the PostgreSQL extension Pl/R. The client/server architecture allows users to remotely connect a number of software applications that can be used as a database front end, including GIS software and WebGIS. Each chapter offers a real-world data management and processing problem that is discussed in its biological context; solutions are proposed and exemplified through ad hoc SQL code, progressively exploring the potential of spatial database functions applied to the respective wildlife tracking case. Finally, wildlife tracking management issues are discussed in the increasingly widespread framework of collaborative science and data sharing. GPS animal telemetry data from a real study, freely available online, are used to demonstrate the proposed examples. This book is also suitable for undergraduate and graduate students, if accompanied by the basics of databases.
Download or read book Bioinformatics written by David Edwards and published by Springer. This book was released on 2010-04-29 with total page 451 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bioinformatics is a relatively new field of research. It evolved from the requirement to process, characterize, and apply the information being produced by DNA sequencing technology. The production of DNA sequence data continues to grow exponentially. At the same time, improved bioinformatics such as faster DNA sequence search methods have been combined with increasingly powerful computer systems to process this information. Methods are being developed for the ever more detailed quantification of gene expression, providing an insight into the function of the newly discovered genes, while molecular genetic tools provide a link between these genes and heritable traits. Genetic tests are now available to determine the likelihood of suffering specific ailments and can predict how plant cultivars may respond to the environment. The steps in the translation of the genetic blueprint to the observed phenotype is being increasingly understood through proteome, metabolome and phenome analysis, all underpinned by advances in bioinformatics. Bioinformatics is becoming increasingly central to the study of biology, and a day at a computer can often save a year or more in the laboratory. The volume is intended for graduate-level biology students as well as researchers who wish to gain a better understanding of applied bioinformatics and who wish to use bioinformatics technologies to assist in their research. The volume would also be of value to bioinformatics developers, particularly those from a computing background, who would like to understand the application of computational tools for biological research. Each chapter would include a comprehensive introduction giving an overview of the fundamentals, aimed at introducing graduate students and researchers from diverse backgrounds to the field and bring them up-to-date on the current state of knowledge. To accommodate the broad range of topics in applied bioinformatics, chapters have been grouped into themes: gene and genome analysis, molecular genetic analysis, gene expression analysis, protein and proteome analysis, metabolome analysis, phenome data analysis, literature mining and bioinformatics tool development. Each chapter and theme provides an introduction to the biology behind the data describes the requirements for data processing and details some of the methods applied to the data to enhance biological understanding.
Download or read book Data Clean Up and Management written by Margaret Hogarth and published by Elsevier. This book was released on 2012-10-22 with total page 579 pages. Available in PDF, EPUB and Kindle. Book excerpt: Data use in the library has specific characteristics and common problems. Data Clean-up and Management addresses these, and provides methods to clean up frequently-occurring data problems using readily-available applications. The authors highlight the importance and methods of data analysis and presentation, and offer guidelines and recommendations for a data quality policy. The book gives step-by-step how-to directions for common dirty data issues. - Focused towards libraries and practicing librarians - Deals with practical, real-life issues and addresses common problems that all libraries face - Offers cradle-to-grave treatment for preparing and using data, including download, clean-up, management, analysis and presentation
Download or read book Information Sources in Science and Technology written by C. C. Parker and published by Butterworth-Heinemann. This book was released on 2013-10-22 with total page 337 pages. Available in PDF, EPUB and Kindle. Book excerpt: Information Sources in Science and Technology: A Practical Guide to Traditional and Online Use presents a selection of traditional and online methods of using information sources in science and technology, including people, organizations, literature, hosts, and databases. This text serves as a reference book that helps the reader choose sources of information and their guides, includes a routine for finding and using information, and offers tips on searching and obtaining literature in a usable form. This book is comprised of nine chapters and begins by explaining how to choose type(s) of information source that is likely to be most helpful. The chapters that follow present guides on people, organizations, and literature as sources of information. A chapter on information services focuses on those organizations that supply information or references to information that could be helpful. These services range from answering telephone queries to supplying collections of relevant documents, and from broadcast television information to direct connection with computer databases. The next chapters discuss ways of searching the literature and computer databases, obtaining literature in a usable form, and organizing and presenting information. This book concludes by considering current awareness or keeping up-to-date with information about recent developments. This monograph is intended for librarians and information officers, especially for those working in scientific or industrial environments, practicing scientists and engineers, and students associated with these professions.
