Download or read book Physiology and Molecular Ecology of Chemolithoautotrophic Nitrate Reducing Bacteria at Deep Sea Hydrothermal Vents written by and published by . This book was released on 2007 with total page 115 pages. Available in PDF, EPUB and Kindle. Book excerpt: At hydrothermal vent systems, the ability of microorganisms to use sulfur containing compounds for metabolic purposes has been long established while little is known regarding nitrogen metabolism. The objective of this thesis was to gain a better understanding of how microorganisms are involved in the cycling of nitrogen at deep sea hydrothermal vents through culture dependent and independent methods, isolation of novel nitrate reducing microorganisms, and phylogenetic surveys (16S rRNA gene, citrate lyase (aclA and aclB), and periplasmic nitrate reductase (napA)) of isolates and environmental samples. Sulfide, fluid, and bacterial filament samples from three separate hydrothermal vent sites (Rainbow, Logatchev, and Broken Spur) along the Mid Atlantic Ridge (MAR) and from 9° N on the East Pacific Rise (EPR) were used for isolation and phylogenetic surveys. Several novel autotrophic nitrate ammonifying bacterial strains belonging to the Epsilonproteobacteria were isolated with strain TB2 described as a new species, Caminibacter mediatlanticus. Phylogenetic surveys of the 16S rRNA gene, aclB, and napA showed the dominance of C. mediatlanticus related organisms at the Rainbow hydrothermal vent system indicating that we had successfully isolated an environmentally relevant organism. The environmental survey for napA was the first to be completed for deep sea hydrothermal vents. The phylogenetic survey of napA in reference organisms and environmental samples indicated that there is a wide diversity of Epsilonproteobacterial related sequences present at hydrothermal vents, with the greatest diversity seen within the mesophilic temperature range. It also appears that the periplasmic nitrate reductase gene (napA) is possibly being laterally transferred between members among the Epsilonproteobacteria.
Download or read book Microbial Ecology of Deep sea Hydrothermal Vents written by Ileana Pérez-Rodríguez and published by . This book was released on 2012 with total page 100 pages. Available in PDF, EPUB and Kindle. Book excerpt: The global influence of mid-oceanic ridges (MOR) first became apparent through continental drifting--its immanent force easily appreciated in today's resulting continents. The role of MORs as a source of global-ocean chemistry is less apparent but equally immense. Key to these processes is fluid-rock reactions between circulating seawater and hot new basalt. With the discovery of hydrothermal vent ecosystems in the 1970's, yet another important consequence of rock-fluid interaction was established in chemosynthesis. Early photographic descriptions of "frosted white and yellow precipitates" covering basalt rocks close to discharged hydrothermal fluids, with benthic communities emerging from them, referred to the now known chemosynthetic biofilms that interact with hydrothermal fluids. These microorganisms have a pivotal role in transforming the geochemistry of Earth's oceans. The main objectives of this dissertation are to study anaerobic chemosynthetic vent microorganisms, and to explore the molecular ecology of these biofilm communities. Initial approaches included isolation of anaerobic chemosynthetic microorganisms resulting in the description of two novel bacterial species: the epsilonproteobacterium Nautilia nitratireducens strain MB-1T, and Phorcys thermohydrogeniphilus strain HB-8T, a new genus in the Aquificales. Both bacteria are obligate thermophilic anaerobes, capable of hydrogen oxidation coupled to sulfur- and nitrate-reduction. Further investigation focused on mechanisms regulating vent biofilms, the dominant growth strategy in vent microbial communities. Quorum-sensing (QS), a mechanism relying on cell density and the production of extracellular signals for cell-cell communication, is used by many microbial species to regulate biofilm formation. One QS signal is Autoinducer-2, whose precursor is synthesized by the LuxS enzyme. To study QS in vent environments, Caminibacter mediatlanticus and Sulfurovum lithotrophicum, cultured members of the well represented Epsilonproteobacteria, were used as model systems. The luxS gene and transcripts were detected in their genomes and during growth, respectively; these luxS-expressing cultures induced bioluminescence, a QS response, in a Vibrio harveyi reporter strain. Detection of luxS transcripts in-situ, also indicated that QS is likely occurring in natural vent biofilms. This data demonstrates that vent Epsilonproteobacteria posses the luxS/AI-2 system for cell-cell communication. This work is relevant to our overall understanding of microbial phenotypic plasticity in response to environmental factors.
Download or read book The Ecology of Deep sea Hydrothermal Vents written by Cindy Van Dover and published by . This book was released on 2000 with total page 424 pages. Available in PDF, EPUB and Kindle. Book excerpt: Teeming with weird and wonderful life--giant clams and mussels, tubeworms, "eyeless" shrimp, and bacteria that survive on sulfur--deep-sea hot-water springs are found along rifts where sea-floor spreading occurs. The theory of plate tectonics predicted the existence of these hydrothermal vents, but they were discovered only in 1977. Since then the sites have attracted teams of scientists seeking to understand how life can thrive in what would seem to be intolerable or extreme conditions of temperature and fluid chemistry. Some suspect that these vents even hold the key to understanding the very origins of life. Here a leading expert provides the first authoritative and comprehensive account of this research in a book intended for students, professionals, and general readers. Cindy Lee Van Dover, an ecologist, brings nearly two decades of experience and a lively writing style to the text, which is further enhanced by two hundred illustrations, including photographs of vent communities taken in situ. The book begins by explaining what is known about hydrothermal systems in terms of their deep-sea environment and their geological and chemical makeup. The coverage of microbial ecology includes a chapter on symbiosis. Symbiotic relationships are further developed in a section on physiological ecology, which includes discussions of adaptations to sulfide, thermal tolerances, and sensory adaptations. Separate chapters are devoted to trophic relationships and reproductive ecology. A chapter on community dynamics reveals what has been learned about the ways in which vent communities become established and why they persist, while a chapter on evolution and biogeography examines patterns of species diversity and evolutionary relationships within chemosynthetic ecosystems. Cognate communities such as seeps and whale skeletons come under scrutiny for their ability to support microbial and invertebrate communities that are ecologically and evolutionarily related to hydrothermal faunas. The book concludes by exploring the possibility that life originated at hydrothermal vents, a hypothesis that has had tremendous impact on our ideas about the potential for life on other planets or planetary bodies in our solar system.
Download or read book Topics in Ecological and Environmental Microbiology written by Thomas Mitchell Schmidt and published by Academic Press. This book was released on 2011-09-28 with total page 772 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides an overview of ecological aspects of the metabolism and behavior of microbes, microbial habitats, biogeochemical cycles, and biotechnology. It was designed by selecting relevant chapters from the comprehensive Encyclopedia of Microbiology, 3rd edn., and inviting the original authors to update their material to include key developments and advances in the field.
Download or read book Hydrothermal microbial ecosystems written by Andreas Teske and published by Frontiers Media SA. This book was released on 2015-11-24 with total page 286 pages. Available in PDF, EPUB and Kindle. Book excerpt: The papers in the "Hydrothermal Vent" e-book cover a range of microbiological research in deep and shallow hydrothermal environments, from high temperature “black smokers,” to diffuse flow habitats and episodically discharging subsurface fluids, to the hydrothermal plumes. Together they provide a snapshot of current research interests in a field that has evolved rapidly since the discovery of hydrothermal vents in 1977. Hydrothermally influenced microbial habitats and communities represent a wide spectrum of geological setting, chemical in-situ regimes, and biotic communities; the classical examples of basalt-hosted black smoker chimneys at active mid-ocean spreading centers have been augmented by hydrothermally heated and chemically altered sediments, microbiota fueled by serpentinization reactions, and low-temperature vents with unusual menus of electron donors. Environmental gradients and niches provide habitats for unusual or unprecedented microorganisms and microbial ecosystems. The discovery of novel extremophiles underscores untapped microbial diversity in hydrothermal vent microbial communities. Different stages of hydrothermal activity, from early onset to peak activity, gradual decline, and persistence of cold and fossil vent sites, correspond to different colonization waves by microorganisms as well as megafauna. Perhaps no other field in microbiology is so intertwined with the geological and geochemical evolution of the oceans, and promises so many biochemical and physiological discoveries still to be made within the unexhausted richness of extreme microbial life.
Download or read book Dissertation Abstracts International written by and published by . This book was released on 2008 with total page 800 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book 16th Deep Sea Biology Symposium written by Alexandra Anh-Thu Weber and published by Frontiers Media SA. This book was released on 2023-11-28 with total page 381 pages. Available in PDF, EPUB and Kindle. Book excerpt: The 16th Deep-Sea Biology Symposium was held in Brest, France, and online from the 12th to the 17th of September 2021. The first DSBS hybrid symposium brought together scientists, students, managers, policymakers, and industry specialists who presented advances in deep-sea research. Themes of the symposium, and of this Research Topic, include: - Conservation and stewardship: natural/anthropogenic impacts, conservation, governance. This includes but it is not limited to: deep-seabed mining, pollutants and debris, climate change impacts; marine spatial planning; stewardship of the deep ocean; - Biodiversity and ecosystem functioning: biodiversity patterns, species distribution, function; from polar to temperate regions, mesopelagic to hadal, microbes to large pelagic; - Life-history traits and population connectivity: reproductive ecology, larval development and dispersal, and population connectivity; - Adaptations of deep-sea organisms: from molecules to organisms: how life adapts to extreme conditions, including for instance bioluminescence and vision in the deep-sea; - Access to the deep sea: technological and methodological advances to access and investigate deep-sea life, including observatories and cutting edge technologies –e.g. A.I. and omics; - Deep-sea biomimicry: discovery of new technologies inspired by deep-sea biological solutions; - Science communication in the deep including innovative approaches to increase ocean literacy (merging “arts & sciences”).
Download or read book Trace Metal Biogeochemistry and Ecology of Deep Sea Hydrothermal Vent Systems written by Liudmila L. Demina and published by . This book was released on 2016 with total page 210 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume synthesizes the relevant data that is fundamental to our understanding of trace metal biogeochemistry and the ecology of biological communities of deep-sea vent systems. It presents the combined results of biological and geochemical research and analyzes the microdistribution of animals and the spatial structure of vent communities. Careful consideration is given to the export of iron and other trace metals from hydrothermal vents. The environmental conditions to be found in deep-sea hydrothermal community habitats, along with the trace metal behavior in biotope water are characterized and the sources and forms of trace metals taken up by dominant hydrothermal vent animals are discussed. Special attention is paid to the poorly investigated deep biosphere of the sub-seafloor igneous crust. The book is illustrated with a wealth of exceptional deep-sea photos taken by the manned submersible "Mir", and a dedicated chapter focuses on the role of deep manned submersibles in ocean research. The book will be of interest to researchers and students in the fields of oceanography, geochemistry, biology, the environmental sciences and marine ecology.
Download or read book Microbial Sulfur Metabolism written by Christiane Dahl and published by Springer Science & Business Media. This book was released on 2007-09-09 with total page 329 pages. Available in PDF, EPUB and Kindle. Book excerpt: This revealing book details recent developments in the study of the relationship between sulfur and the microbial agents that affect its metabolism. In recent years, new methods have been applied to study the biochemistry and molecular biology of reactions of the global sulfur cycle, the microorganisms involved and their physiology, metabolism and ecology. These activities have uncovered fascinating new insights for the understanding of aerobic and anaerobic sulfur metabolism.
Download or read book Molecular Ecology of Free living Chemoautotrophic Microbial Communities at a Shallow sea Hydrothermal Vent written by Chia-I Huang and published by . This book was released on 2012 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book The Prokaryotes written by Edward F. DeLong and published by Springer. This book was released on 2014-10-13 with total page 567 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Prokaryotes is a comprehensive, multi-authored, peer reviewed reference work on Bacteria and Achaea. This fourth edition of The Prokaryotes is organized to cover all taxonomic diversity, using the family level to delineate chapters. Different from other resources, this new Springer product includes not only taxonomy, but also prokaryotic biology and technology of taxa in a broad context. Technological aspects highlight the usefulness of prokaryotes in processes and products, including biocontrol agents and as genetics tools. The content of the expanded fourth edition is divided into two parts: Part 1 contains review chapters dealing with the most important general concepts in molecular, applied and general prokaryote biology; Part 2 describes the known properties of specific taxonomic groups. Two completely new sections have been added to Part 1: bacterial communities and human bacteriology. The bacterial communities section reflects the growing realization that studies on pure cultures of bacteria have led to an incomplete picture of the microbial world for two fundamental reasons: the vast majority of bacteria in soil, water and associated with biological tissues are currently not culturable, and that an understanding of microbial ecology requires knowledge on how different bacterial species interact with each other in their natural environment. The new section on human microbiology deals with bacteria associated with healthy humans and bacterial pathogenesis. Each of the major human diseases caused by bacteria is reviewed, from identifying the pathogens by classical clinical and non-culturing techniques to the biochemical mechanisms of the disease process. The 4th edition of The Prokaryotes is the most complete resource on the biology of prokaryotes. The following volumes are published consecutively within the 4th Edition: Prokaryotic Biology and Symbiotic Associations Prokaryotic Communities and Ecophysiology Prokaryotic Physiology and Biochemistry Applied Bacteriology and Biotechnology Human Microbiology Actinobacteria Firmicutes Alphaproteobacteria and Betaproteobacteria Gammaproteobacteria Deltaproteobacteria and Epsilonproteobacteria Other Major Lineages of Bacteria and the Archaea
Download or read book Microbial Diversity and Resources in Tidal Flats written by Xue-Wei Xu and published by Frontiers Media SA. This book was released on 2024-06-06 with total page 232 pages. Available in PDF, EPUB and Kindle. Book excerpt: Tidal flats are widely distributed worldwide, occupying at least 127,921 km2, of which 70% are located in coastal areas of Asia, and North and South America. As a confluence of terrestrial and marine ecosystems, tidal flat is dually influenced by these two ecosystems and becomes one of the most productive ecosystems. Rhythmic changes of environmental factors (e.g., salinity, temperature, dissolved oxygen, illumination intensity, ocean current, etc.) and frequent disturbances of human behaviour enhance organic matter as well as nitrogen, phosphorus, and sulfur compounds in tidal flats. Furthermore, tidal flats have various important ecosystem functions, including climate regulation, shoreline stabilization, carbon fixation, pollutant degradation, etc.
Download or read book Index Medicus written by and published by . This book was released on 2003 with total page 2084 pages. Available in PDF, EPUB and Kindle. Book excerpt: Vols. for 1963- include as pt. 2 of the Jan. issue: Medical subject headings.
Download or read book Nitrous Oxide and Climate Change written by Keith Smith and published by Routledge. This book was released on 2010-08-12 with total page 238 pages. Available in PDF, EPUB and Kindle. Book excerpt: Nitrous oxide, N2O, is the third most important (in global warming terms) of the greenhouse gases, after carbon dioxide and methane. As this book describes, although it only comprises 320 parts per billion of the earth's atmosphere, it has a so-called Global Warming Potential nearly 300 times greater than that of carbon dioxide. N2O emissions are difficult to estimate, because they are predominantly biogenic in origin. The N2O is formed in soils and oceans throughout the world, by the microbial processes of nitrification and denitrification, that utilise the reactive N compounds ammonium and nitrate, respectively. These forms of nitrogen are released during the natural biogeochemical nitrogen cycle, but are also released by human activity. In fact, the quantity of these compounds entering the biosphere has virtually doubled since the beginning of the industrial age, and this increase has been matched by a corresponding increase in N2O emissions. The largest source is now agriculture, driven mainly by the use of synthetic nitrogen fertilisers. The other major diffuse source derives from release of NOx into the atmosphere from fossil fuel combustion and biomass burning, as well as ammonia from livestock manure. Some N2O also comes directly from combustion, and from two processes in the chemical industry: the production of nitric acid, and the production of adipic acid, used in nylon manufacture. Action is being taken to curb the industrial point-source emissions of N2O, but measures to limit or reduce agricultural emissions are inherently more difficult to devise. As we enter an era in which measures are being explored to reduce fossil fuel use and/or capture or sequester the CO2 emissions from the fuel, it is likely that the relative importance of N2O in the 'Kyoto basket' of greenhouse gases will increase, because comparable mitigation measures for N2O are inherently more difficult, and because expansion of the land area devoted to crops, to feed the increasing global population and to accommodate the current development of biofuels, is likely to lead to an increase in N fertiliser use, and thus N2O emission, worldwide. The aim of this book is to provide a synthesis of scientific information on the primary sources and sinks of nitrous oxide and an assessment of likely trends in atmospheric concentrations over the next century and the potential for mitigation measures.
Download or read book The Ecology of Deep sea Hydrothermal Vents written by Cindy Van Dover and published by Princeton University Press. This book was released on 2000-03-26 with total page 474 pages. Available in PDF, EPUB and Kindle. Book excerpt: Teeming with weird and wonderful life--giant clams and mussels, tubeworms, "eyeless" shrimp, and bacteria that survive on sulfur--deep-sea hot-water springs are found along rifts where sea-floor spreading occurs. The theory of plate tectonics predicted the existence of these hydrothermal vents, but they were discovered only in 1977. Since then the sites have attracted teams of scientists seeking to understand how life can thrive in what would seem to be intolerable or extreme conditions of temperature and fluid chemistry. Some suspect that these vents even hold the key to understanding the very origins of life. Here a leading expert provides the first authoritative and comprehensive account of this research in a book intended for students, professionals, and general readers. Cindy Lee Van Dover, an ecologist, brings nearly two decades of experience and a lively writing style to the text, which is further enhanced by two hundred illustrations, including photographs of vent communities taken in situ. The book begins by explaining what is known about hydrothermal systems in terms of their deep-sea environment and their geological and chemical makeup. The coverage of microbial ecology includes a chapter on symbiosis. Symbiotic relationships are further developed in a section on physiological ecology, which includes discussions of adaptations to sulfide, thermal tolerances, and sensory adaptations. Separate chapters are devoted to trophic relationships and reproductive ecology. A chapter on community dynamics reveals what has been learned about the ways in which vent communities become established and why they persist, while a chapter on evolution and biogeography examines patterns of species diversity and evolutionary relationships within chemosynthetic ecosystems. Cognate communities such as seeps and whale skeletons come under scrutiny for their ability to support microbial and invertebrate communities that are ecologically and evolutionarily related to hydrothermal faunas. The book concludes by exploring the possibility that life originated at hydrothermal vents, a hypothesis that has had tremendous impact on our ideas about the potential for life on other planets or planetary bodies in our solar system.
Download or read book Encyclopedia of Caves written by William B. White and published by Academic Press. This book was released on 2019-05-10 with total page 1250 pages. Available in PDF, EPUB and Kindle. Book excerpt: Encyclopedia of Caves, Third Edition, provides detailed background information to anyone with a serious interest in caves. This includes students, both undergraduate and graduate, in the earth, biological and environmental sciences, and consultants, environmental scientists, land managers and government agency staff whose work requires them to know something about caves and the biota that inhabit them. Caves touch on many scientific interests in geology, climate science, biology, hydrology, archaeology, and paleontology, as well as more popular interests in sport caving and cave exploration. Case studies and descriptions of specific caves selected for their special features and public interest are also included. This book will appeal to these audiences by providing in-depth essays written by expert authors chosen for their expertise in their assigned subject. Features 14 new chapters and 13 completely rewritten chapters Contains beautifully illustrated content, with more than 500 color images of cave life and features Provides extensive bibliographies that allow readers to access their subject of interest in greater depth
Download or read book Molecular Basis of Symbiosis written by Jr̲g Overmann and published by Springer Science & Business Media. This book was released on 2006-01-10 with total page 336 pages. Available in PDF, EPUB and Kindle. Book excerpt: Extrusive Bacterial Ectosymbiosis of Ciliates.
