Download or read book Phylogenomic Discordance in Plant Systematics written by Stefan Wanke and published by Frontiers Media SA. This book was released on 2023-11-15 with total page 233 pages. Available in PDF, EPUB and Kindle. Book excerpt: Phylogenetics often uncovers contradicting hypotheses regarding the relationships within the same group of organisms, a phenomenon known since the beginning of the molecular systematics era. While, historically, single marker-based analyses produced discordance, nowadays entire cellular genomes or portions of the same genomic compartment conflict with others or the rest, respectively. In contrast to the beginning of the molecular systematics era, when adding markers and taxa offered a way out of systematic errors, genome inference-based incongruences cannot be addressed and explained easily. Disagreeing phylogenomic hypotheses might originate from various evolutionary processes, including but not limited to hybridization or incomplete lineage sorting, thereby leading to gene tree-versus species tree-associated discrepancies. Today, this can be expanded to genome discordance, where phylogenomic signals of organellar genomes (plastid, mitochondrial) and the nuclear genome disagree due to intrinsically different coalescent paths or phenomena like organelle capture.
Download or read book Plant Systematics written by Walter S. Judd and published by Sinauer Associates, Incorporated. This book was released on 2008 with total page 636 pages. Available in PDF, EPUB and Kindle. Book excerpt: A comprehensive introduction to vascular plant phylogeny, the third edition of "Plant Systematics" reflects changes in the circumscription of many orders and families to represent monophyletic groups, following the most recent classification of the Angiosperm Phylogeny Group. Molecular taxonomic methods are fully presented, as are the results of many recent studies, both molecular and morphological.
Download or read book Fundamentals of Plant Systematics written by Albert E. Radford and published by HarperCollins Publishers. This book was released on 1986 with total page 520 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Molecular Systematics and Plant Evolution written by Peter M. Hollingsworth and published by CRC Press. This book was released on 1999-08-19 with total page 508 pages. Available in PDF, EPUB and Kindle. Book excerpt: Molecular Systematics and Plant Evolution discusses the diversity and evolution of plants with a molecular approach. It looks at population genetics, phylogeny (history of evolution) and developmental genetics, to provide a framework from which to understand evolutionary patterns and relationships amongst plants. The international panel of contributors are all respected systematists and evolutionary biologists, who have brought together a wide range of topics from the forefront of research while keeping the text accessible to students. It has been written for senior undergraduates, postgraduates and researchers in the fields of botany, systematics, population / conservation genetics, phylogenetics and evolutionary biology.
Download or read book Molecular Systematics of Plants II written by Pamela Soltis and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 586 pages. Available in PDF, EPUB and Kindle. Book excerpt: In the five years since the publication of Molecular Systematics of Plants, the field of molecular systematics has advanced at an astonishing pace. This period has been marked by a volume of new empirical data and advances in theoretical and analytical issues related to DNA. Comparative DNA sequencing, facilitated by the amplification of DNA via the polymerase chain reaction (PCR), has become the tool of choice for molecular systematics. As a result, large portions of the Molecular Systematics of Plants have become outdated. Molecular Systematics of Plants II summarizes these recent achievements in plant molecular systematics. Like its predecessor, this completely revised work illustrates the potential of DNA markers for addressing a wide variety of phylogenetic and evolutionary questions. The volume provides guidance in choosing appropriate techniques, as well as appropriate genes for sequencing, for given levels of systematic inquiry. More than a review of techniques and previous work, Molecular Systematics of Plants II provides a stimulus for developing future research in this rapidly evolving field. Molecular Systematics of Plants II is not only written for systematists (faculty, graduate students, and researchers), but also for evolutionary biologists, botanists, and paleobotanists interested in reviewing current theory and practice in plant molecular systematics.
Download or read book Plant Systematics written by Walter Stephen Judd and published by . This book was released on 2023 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Incorporating phylogenetic principles and methods throughout, this text moves from the careful explanation of phylogenetic methods and principles to the taxonomic survey of vascular plant families. It assumes no prerequisites other than introductory botany or biology.
Download or read book Plant Systematics written by Tod F. Stuessy and published by . This book was released on 2001 with total page 418 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Molecular Systematics of Plants II written by Pamela Soltis and published by Springer. This book was released on 1998-06-30 with total page 574 pages. Available in PDF, EPUB and Kindle. Book excerpt: In the five years since the publication of Molecular Systematics of Plants, the field of molecular systematics has advanced at an astonishing pace. This period has been marked by a volume of new empirical data and advances in theoretical and analytical issues related to DNA. Comparative DNA sequencing, facilitated by the amplification of DNA via the polymerase chain reaction (PCR), has become the tool of choice for molecular systematics. As a result, large portions of the Molecular Systematics of Plants have become outdated. Molecular Systematics of Plants II summarizes these recent achievements in plant molecular systematics. Like its predecessor, this completely revised work illustrates the potential of DNA markers for addressing a wide variety of phylogenetic and evolutionary questions. The volume provides guidance in choosing appropriate techniques, as well as appropriate genes for sequencing, for given levels of systematic inquiry. More than a review of techniques and previous work, Molecular Systematics of Plants II provides a stimulus for developing future research in this rapidly evolving field. Molecular Systematics of Plants II is not only written for systematists (faculty, graduate students, and researchers), but also for evolutionary biologists, botanists, and paleobotanists interested in reviewing current theory and practice in plant molecular systematics.
Download or read book Rise to the challenges in plastome phylogenomics written by Wenpan Dong and published by Frontiers Media SA. This book was released on 2023-06-23 with total page 133 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Plant Molecular Systematics written by Daniel J. Crawford and published by Wiley-Interscience. This book was released on 1990-04-24 with total page 404 pages. Available in PDF, EPUB and Kindle. Book excerpt: Describes how the primary chemicals (protein, DNA) found in plants are used in determining plant taxonomic and evolutionary relationships--a growing area reflecting the application of molecular biologic techniques in macromolecular systematic research. Topics include seed protein electrophoresis, electrophoretic studies of Rubisco, enzyme electrophoresis, amino acid sequencing, and systematic serology. Emphasizes evaluation of the systematic potential of the various kinds of data made available by new technology. Includes case studies and discussion of trends and directions in molecular systematics.
Download or read book Plant Taxonomy written by Tod F. Stuessy and published by Columbia University Press. This book was released on 2009 with total page 566 pages. Available in PDF, EPUB and Kindle. Book excerpt: The field of plant taxonomy has transformed rapidly over the past fifteen years, especially with regard to improvements in cladistic analysis and the use of new molecular data. The second edition of this popular resource reflects these far-reaching and dramatic developments with more than 3,000 new references and many new figures. Synthesizing current research and trends, Plant Taxonomy now provides the most up-to-date overview in relation to monographic, biodiversity, and evolutionary studies, and continues to be an essential resource for students and scholars. This text is divided into two parts: Part 1 explains the principles of taxonomy, including the importance of systematics, characters, concepts of categories, and different approaches to biological classification. Part 2 outlines the different types of data used in plant taxonomic studies with suggestions on their efficacy and modes of presentation and evaluation. This section also lists the equipment and financial resources required for gathering each type of data. References throughout the book illuminate the historical development of taxonomic terminology and philosophy while citations offer further study. Plant Taxonomy is also a personal story of what it means to be a practicing taxonomist and to view these activities within a meaningful conceptual framework. Tod F. Stuessy recalls the progression of his own work and shares his belief that the most creative taxonomy is done by those who have a strong conceptual grasp of their own research.
Download or read book Plant Systematics written by Tod F. Stuessy and published by . This book was released on 2014 with total page 425 pages. Available in PDF, EPUB and Kindle. Book excerpt: Deals with biodiversity from evolution and interpretation of evolution as well as taxonomy. The relationships of Plant Systematics to Biodiversity is in the conclusion has an index to Taxa Index to subjects
Download or read book Bioinformatics and Phylogenetics written by Tandy Warnow and published by Springer. This book was released on 2019-04-08 with total page 410 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume presents a compelling collection of state-of-the-art work in algorithmic computational biology, honoring the legacy of Professor Bernard M.E. Moret in this field. Reflecting the wide-ranging influences of Prof. Moret’s research, the coverage encompasses such areas as phylogenetic tree and network estimation, genome rearrangements, cancer phylogeny, species trees, divide-and-conquer strategies, and integer linear programming. Each self-contained chapter provides an introduction to a cutting-edge problem of particular computational and mathematical interest. Topics and features: addresses the challenges in developing accurate and efficient software for the NP-hard maximum likelihood phylogeny estimation problem; describes the inference of species trees, covering strategies to scale phylogeny estimation methods to large datasets, and the construction of taxonomic supertrees; discusses the inference of ultrametric distances from additive distance matrices, and the inference of ancestral genomes under genome rearrangement events; reviews different techniques for inferring evolutionary histories in cancer, from the use of chromosomal rearrangements to tumor phylogenetics approaches; examines problems in phylogenetic networks, including questions relating to discrete mathematics, and issues of statistical estimation; highlights how evolution can provide a framework within which to understand comparative and functional genomics; provides an introduction to Integer Linear Programming and its use in computational biology, including its use for solving the Traveling Salesman Problem. Offering an invaluable source of insights for computer scientists, applied mathematicians, and statisticians, this illuminating volume will also prove useful for graduate courses on computational biology and bioinformatics.
Download or read book Monocots Systematics and Evolution written by Karen L Wilson and published by CSIRO PUBLISHING. This book was released on 2000-05-19 with total page 728 pages. Available in PDF, EPUB and Kindle. Book excerpt: Monocots: Systematics and Evolution presents leading work from around the world on non-grass monocotyledons and includes reviews and current research into their comparative biology, phylogeny and classification. The papers are based on presentations at the Second International Conference on the Comparative Biology of the Monocotyledons, Monocots II, held in Sydney, Australia in late 1998. Many were subsequently updated or extended to take into account new information. All 72 papers have been peer-reviewed.
Download or read book Phylogenetics written by E. O. Wiley and published by John Wiley & Sons. This book was released on 2011-06-07 with total page 444 pages. Available in PDF, EPUB and Kindle. Book excerpt: The long-awaited revision of the industry standard on phylogenetics Since the publication of the first edition of this landmark volume more than twenty-five years ago, phylogenetic systematics has taken its place as the dominant paradigm of systematic biology. It has profoundly influenced the way scientists study evolution, and has seen many theoretical and technical advances as the field has continued to grow. It goes almost without saying that the next twenty-five years of phylogenetic research will prove as fascinating as the first, with many exciting developments yet to come. This new edition of Phylogenetics captures the very essence of this rapidly evolving discipline. Written for the practicing systematist and phylogeneticist, it addresses both the philosophical and technical issues of the field, as well as surveys general practices in taxonomy. Major sections of the book deal with the nature of species and higher taxa, homology and characters, trees and tree graphs, and biogeography—the purpose being to develop biologically relevant species, character, tree, and biogeographic concepts that can be applied fruitfully to phylogenetics. The book then turns its focus to phylogenetic trees, including an in-depth guide to tree-building algorithms. Additional coverage includes: Parsimony and parsimony analysis Parametric phylogenetics including maximum likelihood and Bayesian approaches Phylogenetic classification Critiques of evolutionary taxonomy, phenetics, and transformed cladistics Specimen selection, field collecting, and curating Systematic publication and the rules of nomenclature Providing a thorough synthesis of the field, this important update to Phylogenetics is essential for students and researchers in the areas of evolutionary biology, molecular evolution, genetics and evolutionary genetics, paleontology, physical anthropology, and zoology.
Download or read book Biological Systematics written by Randall T. Schuh and published by Cornell University Press. This book was released on 2000 with total page 264 pages. Available in PDF, EPUB and Kindle. Book excerpt: Most students who take a course in biological systematics do so to learn how to construct a data matrix and generate and evaluate a tree of phylogenetic relationships. Biological Systematics: Principles and Applications, by Randall T. Schuh, provides a welcome tool for these students and their instructors: it is a comprehensive and completely new textbook, the first of its kind since 1981. Systematics, the study of the reconstruction of the history of life, forms the underlying basis for organizing the knowledge of biology; cladistics is the diagrammatic method of charting phylogenetic relationships over time among evolving life forms. Cladistics analysis, the key tool used in this book, is also of great use outside pure systematic studies, and interests many students of population biology, ecology, epidemiology, and natural resources.Suitable for both graduate and advanced undergraduate students, Biological Systematics: Principles and Applications covers the core material for courses in biological systematics, with equal emphasis on both botany and zoology. It includes sections on the history and resources of the field; biological nomenclature; the theory of homology, character analysis, and computer algorithms; and the application of the results of systematic studies in the areas of biological classification, biogeography, adaptation and co-evolution, and biodiversity and conservation.
Download or read book Plant Genomes written by Jean-Nicolas Volff and published by Karger Medical and Scientific Publishers. This book was released on 2008-01-01 with total page 155 pages. Available in PDF, EPUB and Kindle. Book excerpt: Recent major advances in the field of comparative genomics and cytogenomics of plants, particularly associated with the completion of ambitious genome projects, have uncovered astonishing facets of the architecture and evolutionary history of plant genomes. The aim of this book was to review these recent developments as well as their implications in our understanding of the mechanisms which drive plant diversity. New insights into the evolution of gene functions, gene families and genome size are presented, with particular emphasis on the evolutionary impact of polyploidization and transposable elements. Knowledge on the structure and evolution of plant sex chromosomes, centromeres and microRNAs is reviewed and updated. Taken together, the contributions by internationally recognized experts present a panoramic overview of the structural features and evolutionary dynamics of plant genomes.This volume of Genome Dynamics will provide researchers, teachers and students in the fields of biology and agronomy with a valuable source of current knowledge on plant genomes.
