Download or read book Overview of PCR Methods Applied for the Identification of Freshwater Toxigenic Cyanobacteria written by Kyoung-Jin Yoon and published by . This book was released on 2022 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Although cyanobacteria are essential microorganisms on earth, some cyanobacteria produce toxins known as cyanotoxins, threatening humans and animals,Äô health. Hence, it is imperative to rapidly and accurately identify those toxic cyanobacteria. Unfortunately, traditional microscopic methods have limitations for accurate identification due to the lack of discernable morphological difference between toxic and non-toxic strains within the same cyanobacterial species or genus. In contrast, their genetic profiles are inherently conserved; therefore, nucleic acid-based assays can be more reliable for precise identification. Furthermore, molecular assays can provide high throughput and significantly reduce the turnaround time of test results. Such advantages make those assays a preferred method for rapid detection and early warning of potential toxicity. Toxigenic cyanobacterial species have synthetase genes (DNAs) for toxin production, which can be excellent marker genes. Numerous molecular assays targeting cyanotoxin synthetase genes have been developed for the identification of toxigenic cyanobacteria at various taxonomic levels. Polymerase chain reaction (PCR)-based assays are the most prevailing. Among different versions of PCR assays, the real-time quantitative PCR can be utilized to quantify the genes of interest in samples, fulfilling the purpose of both taxonomic recognition and biomass estimation. Reverse transcription (RT)-PCR assays can be used to detect transcripts (i.e., mRNAs) from toxin synthetase genes, probably enhancing the predictive value of PCR detection for toxin production from observed cyanobacterial species. Nevertheless, the utility of toxin synthetase gene- or its transcript-based PCR assays for routine cyanotoxin monitoring needs to be further evaluated on a large scale.

Download or read book Molecular Tools for the Detection and Quantification of Toxigenic Cyanobacteria written by Rainer Kurmayer and published by John Wiley & Sons. This book was released on 2017-06-29 with total page 441 pages. Available in PDF, EPUB and Kindle. Book excerpt: A guide to state-of-the-art molecular tools for monitoring and managing the toxigenicity of cyanobacteria Runaway eutrophication and climate change has made the monitoring and management of toxigenic organisms in the world’s bodies of water more urgent than ever. In order to influence public policy regarding the detection and quantification of those organisms, it is incumbent upon scientists to raise the awareness of policy makers concerning the increased occurrence of toxigenic cyanobacteria and the threats they pose. As molecular methods can handle many samples in short time and help identify toxigenic organisms, they are reliable, cost-effective tools available for tracking toxigenic cyanobacteria worldwide. This volume arms scientists with the tools they need to track toxigenicity in surface waters and food supplies and, hopefully, to develop new techniques for managing the spread of toxic cyanobacteria. This handbook offers the first comprehensive treatment of molecular tools for monitoring toxigenic cyanobacteria. Growing out of the findings of the landmark European Cooperation in Science and Technology Cyanobacteria project (CYANOCOST), it provides detailed, practical coverage of the full array of available molecular tools and protocols, from water sampling, nucleic acid extraction, and downstream analysis—including PCR and qPCR based methods—to genotyping (DGGE), diagnostic microarrays, and community characterization using next-gen sequencing techniques. Offers an overview of the latest trends in the field, while providing a foundation for understanding and applying the tools and techniques described Provides detailed coverage of the full range of molecular tools currently available, with expert guidance on the analysis and interpretation of results Includes step-by-step guidance on standard operational procedures, including molecular tests used in environmental monitoring, with individual chapters devoted to each procedure Complements the published Handbook of Cyanobacterial Monitoring and Cyanotoxin Analysis from the CyanoCOST project This handbook is an indispensable working resource for scientists, lab technicians, and water management professionals and an excellent text/reference for graduate students and supervisors who use molecular tools. It will also be of great value to environmental health and protection officials and policy makers.

Download or read book Early Detection of Cyanobacterial Toxins Using Genetic Methods written by J. Paul Rasmussen and published by American Water Works Association. This book was released on 2008 with total page 160 pages. Available in PDF, EPUB and Kindle. Book excerpt: This research sought to develop and test rapid genetic methods to identify toxic cyanobacteria. The key objectives were to (1) conduct a literature review and industry questionnaire examining options for rapid genetic tests; (2) characterize and understand the genes involved in cylindrospermopsin and anatoxin production; (3) adapt conventional PCR assays to real-time PCR; (4) develop rapid field methods for DNA preparation; and (5) develop probes for toxin genes and testing in the field.

Download or read book Cyanobacteria written by Wael N. Hozzein and published by BoD – Books on Demand. This book was released on 2022-01-12 with total page 106 pages. Available in PDF, EPUB and Kindle. Book excerpt: Cyanobacteria are oxygenic organisms that play crucial roles in the cycles of carbon, nitrogen, and oxygen. They are ideal model organisms for studying photosynthesis, nitrogen fixation, and other biological processes. In addition, cyanobacteria are well recognized for their potential for a variety of biotechnological applications. This book presents a comprehensive overview of this interesting and useful group of bacteria. Chapters discuss such topics as the molecular methods applied for identifying freshwater toxigenic cyanobacteria, the diverse industrial applications of cyanobacteria, the potential of cyanobacteria in wound healing, the production of a novel hemoglobin by Synechocystis sp. PCC 6803, and the diversity, distribution, and applications of cyanobacteria in the Brazilian coastline.

Download or read book Protocols for Cyanobacteria Sampling and Detection of Cyanotoxin written by N. Thajuddin and published by Springer Nature. This book was released on 2024-01-19 with total page 504 pages. Available in PDF, EPUB and Kindle. Book excerpt: This protocol book provides detailed procedures for the isolation of cyanobacteria, extraction, quantification, and detection of cyanotoxins. It illustrates the sampling and processing of toxin-producing cyanobacteria in water and aquatic animal samples, detection of cyanotoxins from Anabaena, Anabaenopsis, Cylindrospermopsis, Microsystis, Microcystis, Nodularia, Nostoc, Schizotrix, Lyngbya, Raphidiopsis, Oscillatoria, Planktothrix in aquatic resources. It also covers toxicity analysis by various bioassay protocols, and in vitro and insilico analysis methods. The book also reviews the methods for cyanotoxin extraction, detection, and quantification by various tools including LC-MS/MS, HPLC, NMR, PCR, and HESI-MS/MS. A separate section is dedicated to the advanced methods in Cyanotoxin analysis including the Molecular Imprinting Method (MIM), Cellular signaling biosensor, Electrochemical sensor, Nanosensors, and screening of Polyketide synthase gene. The analysis of various toxin-producing genes like sxtA and mcy is also accounted for in this book. In a nutshell, the book gives comprehensive procedures about the basics and preliminary processes that are involved in sample collection to advanced methods incorporated into the well-explored and unexplored Cyanobacterial toxin. Consequently, this manual is useful for both beginners and advanced researchers, including postgraduate students, academicians, researchers, and scientists in the field of Cyanobacterial research. ​

Download or read book Water Treatment for Purification from Cyanobacteria and Cyanotoxins written by Anastasia E. Hiskia and published by John Wiley & Sons. This book was released on 2020-07-10 with total page 352 pages. Available in PDF, EPUB and Kindle. Book excerpt: Provides a comprehensive overview of key methods for treating water tainted by cyanobacteria and cyanotoxins Toxigenic cyanobacteria are one of the main health risks associated with water resources. Consequently, the analysis, control, and removal of cyanobacteria and cyanotoxins from water supplies is a high priority research area. This book presents a comprehensive review of the state-of-the-art research on water treatment methods for the removal of cyanobacteria, taste and odor compounds, and cyanotoxins. Starting with an introduction to the subject, Water Treatment for Purification from Cyanobacteria and Cyanotoxins offers chapters on cyanotoxins and human health, conventional physical-chemical treatment for the removal of cyanobacteria/cyanotoxins, removal of cyanobacteria and cyanotoxins by membrane processes, biological treatment for the destruction of cyanotoxins, and conventional disinfection and/or oxidation processes. Other chapters look at advanced oxidation processes, removal/destruction of taste and odour compounds, transformation products of cyanobacterial metabolites during treatment and integrated drinking water processes. Provides a comprehensive overview of key methods for treating water tainted by cyanobacteria and cyanotoxins Bridges the gap between basic knowledge of cyanobacteria/cyanotoxins and practical management guidelines Includes integrated processes case studies and real-life examples Developed within the frame of the European Cooperation in Science and Technology (COST)–funded CYANOCOST A must-have resource for every water treatment plant, Water Treatment for Purification from Cyanobacteria and Cyanotoxins is a valuable resource for all researchers in water chemistry and engineering, environmental chemistry as well as water companies and authorities, water resource engineers and managers, environmental and public health protection organizations.

Download or read book Detection Methods for Cynobacterial toxins written by G A Codd and published by Elsevier. This book was released on 1994-01-01 with total page 202 pages. Available in PDF, EPUB and Kindle. Book excerpt: Cyanobacteria, or blue-green algae, commonly occur in a variety of water types throughout the world. A variable, but, high proportion of the cyanobacterial blooms and scums, which can develop annually in lakes, reservoirs, canals and slow-flowing rivers, contain potent toxins. Although animal poisonings and human health problems associated with the ingestion of, or contact with, cyanobacterial scums have long been recognized, a developing understanding of the health hazards posed by the toxins requires that reliable, sensitive, specific and convenient methods are available for their detection and quantification. Detection methods for cynobacterial toxins looks at the application of biological, toxicological, biochemical and physicochemical techniques in studies of cyanobacterial toxins and at experimental methods that have identified at least 50 cyanobacterial compounds toxic to vertebrates. Academics, public health bodies, environmental protection agencies and water companies are all involved in monitoring cyanobacterial levels and effects, and this book will help to ensure that their research is not duplicated, is standardized and comparable, and that optimal progress can be made in an important area that is still in its developing stages.

Download or read book Handbook of Cyanobacterial Monitoring and Cyanotoxin Analysis written by Jussi Meriluoto and published by John Wiley & Sons. This book was released on 2016-12-08 with total page 886 pages. Available in PDF, EPUB and Kindle. Book excerpt: A valuable handbook containing reviews, practical methods and standard operating procedures. A valuable and practical working handbook containing introductory and specialist content that tackles a major and growing field of environmental, microbiological and ecotoxicological monitoring and analysis Includes introductory reviews, practical analytical chapters and a comprehensive listing of almost thirty Standard Operating Procedures (SOPs) For use in the laboratory, in academic and government institutions and industrial settings Those readers will appreciate the research that validates and updates cyanotoxin monitoring and analysis plus adding to approaches for setting standard methods that can be applied worldwide. Wayne Carmichael, Analytical and Bioanalytical Chemistry (2018).

Download or read book Cyanobacterial Harmful Algal Blooms State of the Science and Research Needs written by H. Kenneth Hudnell and published by Springer Science & Business Media. This book was released on 2008-03-13 with total page 955 pages. Available in PDF, EPUB and Kindle. Book excerpt: With the ever-increasing incidence of harmful cyanobacterial algal blooms, this monograph has added urgency and will be essential reading for all sorts of researchers, from neuroscientists to cancer research specialists. The volume contains the proceedings of the 2005 International Symposium on Cyanobacterial Harmful Algal Blooms, and has been edited by H. Kenneth Hudnell, of the US Environmental Protection Agency. It contains much of the most recent research into the subject.

Download or read book Toxic Cyanobacteria in Water written by Ingrid Chorus and published by CRC Press. This book was released on 2021-03-08 with total page 701 pages. Available in PDF, EPUB and Kindle. Book excerpt: Cyanobacterial toxins are among the hazardous substances most widely found in water. They occur naturally, but concentrations hazardous to human health are usually due to human activity. Therefore, to protect human health, managing lakes, reservoirs and rivers to prevent cyanobacterial blooms is critical. This second edition of Toxic Cyanobacteria in Water presents the current state of knowledge on the occurrence of cyanobacteria and cyanotoxins as well as their impacts on health through water-related exposure pathways, chiefly drinking-water and recreational activity. It provides scientific and technical background information to support hazard identification, assessment and prioritisation of the risks posed by cyanotoxins, and it outlines approaches for their management at each step of the water-use system. It sets out key practical considerations for developing management strategies, implementing efficient measures and designing monitoring programmes. This enables stakeholders to evaluate whether there is a health risk from toxic cyanobacteria and to mitigate it with appropriate measures. This book is intended for those working on toxic cyanobacteria with a specific focus on public health protection. It intends to empower professionals from different disciplines to communicate and cooperate for sustainable management of toxic cyanobacteria, including public health workers, ecologists, academics, and catchment and waterbody managers. Ingrid Chorus headed the department for Drinking-Water and Swimming-Pool Hygiene at the German Environment Agency. Martin Welker is a limnologist and microbiologist, currently with bioMérieux in Lyon, France.

Download or read book Algal Toxins Nature Occurrence Effect and Detection written by Valtere Evangelista and published by Springer Science & Business Media. This book was released on 2008-06-27 with total page 398 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume contains the lectures and seminars given at the NATO Advanced Study Institute on “Sensor Systems for Biological Threads: The Algal Toxins Case”, held in Pisa, Italy in October, 2007. The Institute was sponsored and funded by the Scientific Affairs Division of NATO. It is my pleasant duty to thank this institution. This ASI offered updated information on how far the research on algal toxins has gone in the exploration of structures, biosynthesis and regulation of toxins, and the development of technology for bio-monitoring these c- pounds. Algae can form heavy growths in ponds, lakes, reservoirs and sl- moving rivers throughout the world; algae can house toxins which are - ually released into water when the cells rupture or die. Hundreds of toxins have been identified so far. Detection methods, including rapid screening, have been developed to help us learning more about them, especially to find out which toxins are a real threat for people and what conditions encourage their production and accumulation. Early detection of algal toxins is an - portant aspect for public safety and natural environment, and significant efforts are underway to develop effective and reliable tools that can be used for this purpose.

Download or read book Molecular Methods for the Identification and Uantification of Cyanobacteria in Surface Water Sources written by Treyton Michael Moore and published by . This book was released on 2019 with total page 55 pages. Available in PDF, EPUB and Kindle. Book excerpt: This study investigates the use of quantitative Polymerase Chain Reaction (qPCR) for the early detection of geosmin-producing cyanobacteria. qPCR can detect geosmin-producing cyanobacteria via their DNA. I developed a qPCR assay for this study that is capable of sensitively detecting multiple strains of the geosmin-producing Nostoc genus. The developed assay showed high sensitivity, demonstrating the possibility for its use in detecting low concentrations of geosmin-producing cyanobacteria before detectible levels of geosmin have been produced and released into the water. Through further sequencing of more geosmin-producing genera and species, the methodology outlined in this research could be applied to develop the tools necessary to predict taste-and-odor events caused by geosmin-producing cyanobacteria.

Download or read book Harmful Algal Blooms HABs in Latin America written by Marius Nils Müller and published by Frontiers Media SA. This book was released on 2020-03-20 with total page 356 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Development of a Rapid Method for Detection of Bloom forming Cyanobacteria and Algae in Selected New Jersey Waterbodies written by Ben Nyabwari Ondimu and published by . This book was released on 2010 with total page 126 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Cyanotoxins written by Ingrid Chorus and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 374 pages. Available in PDF, EPUB and Kindle. Book excerpt: Toxic cyanobacteria are increasingly recognised as a potential hazard in water for human use. The recent availability of methods for quantitative screening is leading to a surge of research on their occurrence. This book presents a novel compilation of extensive screening results showing the cyanotoxin levels that may be expected when certain taxa dominate. These results indicate cyanotoxins to be the most widespread among the chemicals of concern in water used for drinking and recreation. It further combines field data with results from laboratory culture experiments to suggest a unifying view of how environmental factors control the cyanotoxin levels in natural waters. A practical section is dedicated to the exposure of humans through drinking-water and recreation.

Download or read book Scientific Investigations Report written by Sharon E. Kroening and published by . This book was released on 2004 with total page 122 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Advances in Monitoring and Modelling Algal Blooms in Freshwater Reservoirs written by Inchio Lou and published by Springer. This book was released on 2016-10-08 with total page 154 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book describes essential principles of and approaches to monitoring and modeling algal blooms. Freshwater algal blooms have become a growing concern worldwide. They are caused by a high level of cyanobacteria, particularly Microcystis spp. and Cylindrospermopsis raciborskii, which can produce microcystin and cylindrospermopsin, respectively. Since long-term exposure to these cyanotoxins may affect public health, the reliable detection and quantification of these harmful algae species has become a priority in water quality management. The book utilizes an advanced monitoring approach to identify and quantify cyanobacteria species and various cyanotoxin-producing genotypes. Further, it uses a modeling approach to forecast the occurrence of the phytoplankton that causes algal blooms in freshwater reservoirs, providing a comprehensive picture of currently available micro- and macro-techniques for studying the problem of algal blooms. As such, it offers a valuable guide for researchers, graduate students and professional engineers engaged in monitoring and modeling water quality in lakes and reservoirs. Dr. InChio Lou is an Assistant Professor at University of Macau, Macau, China. Dr. Boping Han is a professor at Jinan Universtiy, Guangzhou, China. Weiying Zhang is a researcher of Environmental Engineering in the area of freshwater phytoplankton at University of Macau, Macau, China.