Download or read book Monte Carlo Simulations of Supported Biomembranes and Protein Folding written by Kristian Dimitrievski and published by . This book was released on 2006 with total page 98 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Monte Carlo Simulations of Protein Folding written by Aaron Reuven Dinner and published by . This book was released on 1999 with total page 433 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Simulations of Protein Folding and Formation of Supported Biomembranes Via Vesicle Adsorption written by Kristian Dimitrievski and published by . This book was released on 2003 with total page 49 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Monte Carlo Simulations of the Thermodynamics of Folding and Denaturation Transitions for Simple Model Proteins written by Eamonn M. O'Toole and published by . This book was released on 1993 with total page 570 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Monte Carlo Methods for Simulation of Protein Folding and Titration written by Björn Rabenstein and published by . This book was released on 2000 with total page 123 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Monte Carlo Simulations of Protein Folding Using Experimental Free Energies of Amino Acid Side Chain side Chain Interactions written by Jason B. Lichten and published by . This book was released on 1993 with total page 126 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Monte Carlo Simulation of Protein Folding in the Presence of Residue specific Binding Sites written by Eddie Rossinsky and published by . This book was released on 2006 with total page 194 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Dynamic Lattice Monte Carlo Simulations of a Model Protein Adsorbing at an Oil water Interface written by Rebeccah Evans Anderson and published by . This book was released on 2000 with total page 480 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Statistical Thermodynamics of Protein Folding written by Ming-Hong Hao and published by . This book was released on 1994 with total page 74 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Molecular Simulations and Biomembranes written by Mark S. P. Sansom and published by Royal Society of Chemistry. This book was released on 2010 with total page 272 pages. Available in PDF, EPUB and Kindle. Book excerpt: The need for information in the understanding of membrane systems has been caused by three things - an increase in computer power; methodological developments and the recent expansion in the number of researchers working on it worldwide. However, there has been no up-to-date book that covers the application of simulation methods to membrane systems directly and this book fills an important void in the market. It provides a much needed update on the current methods and applications as well as highlighting recent advances in the way computer simulation can be applied to the field of membranes and membrane proteins. The objectives are to show how simulation methods can provide an important contribution to the understanding of these systems. The scope of the book is such that it covers simulation of membranes and membrane proteins, but also covers the more recent methodological developments such as coarse-grained molecular dynamics and multiscale approaches in systems biology. Applications embrace a range of biological processes including ion channel and transport proteins. The book is wide ranging with broad coverage and a strong coupling to experimental results wherever possible, including colour illustrations to highlight particular aspects of molecular structure. With an internationally respected list of authors, its publication is timely and it will prove indispensable to a large scientific readership.

Download or read book Lattice Models of Protein Folding Dynamics and Thermodynamics written by Andrzej Koliński and published by Landes Bioscience. This book was released on 1996 with total page 224 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Extended Ensemble Monte Carlo Simulations of Coarse grained Protein Models written by Alfred Christopher Kaushal Farris and published by . This book was released on 2019 with total page 240 pages. Available in PDF, EPUB and Kindle. Book excerpt: In this work, we compare and contrast protein folding behavior in various coarse-grained, "reduced-alphabet" amino acid models, both on- and off-lattice, in an attempt to illuminate the effects of certain interaction parameters on the folding process, as well as to uncover the impact of lattice constraints in these kinds of models. Using modern, extended ensemble Monte Carlo methods -- Wang-Landau sampling, multicanonical sampling, replica-exchange Wang-Landau sampling, and replica-exchange multicanonical sampling, we investigate the thermodynamic and structural behavior of the protein Crambin within the context of the hydrophobic-polar (HP), hydrophobic-"neutral"--Polar (H0P), and semi-flexible H0P model frameworks. Through analysis of specific heat curves in combination with structural observables, we paint a picture of the folding process in all cases; all models undergo, at least, the two major structural transitions observed in nature -- the coil-globule collapse and the folding transition. As the complexity of the model increases, these two major transitions begin to split into multi-step processes, wherein the lattice coarse-graining has a significant impact on the details of these processes. The results show that the level of structural coarse-graining is coupled to the level of interaction coarse-graining, and that, surprisingly, the lattice models yield results that are more similar to those found in experiments.

Download or read book A New Approach to Optimize a Protein Energy Function on a Folding Pathway Using G like Potential and All atom Ab Initio Monte Carlo Simulations written by Aleksandra Safronova and published by . This book was released on 2016 with total page 146 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Monte Carlo Approaches to the Protein Folding Problem written by Matthew Thad Stone and published by . This book was released on 2002 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Computational Approaches for Understanding Dynamical Systems Protein Folding and Assembly written by and published by Academic Press. This book was released on 2020-03-05 with total page 554 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computational Approaches for Understanding Dynamical Systems: Protein Folding and Assembly, Volume 170 in the Progress in Molecular Biology and Translational Science series, provides the most topical, informative and exciting monographs available on a wide variety of research topics. The series includes in-depth knowledge on the molecular biological aspects of organismal physiology, with this release including chapters on Pairwise-Additive and Polarizable Atomistic Force Fields for Molecular Dynamics Simulations of Proteins, Scale-consistent approach to the derivation of coarse-grained force fields for simulating structure, dynamics, and thermodynamics of biopolymers, Enhanced sampling and free energy methods, and much more. Includes comprehensive coverage on molecular biology Presents ample use of tables, diagrams, schemata and color figures to enhance the reader's ability to rapidly grasp the information provided Contains contributions from renowned experts in the field

Download or read book Computer Simulations of Protein Folding and Evolution written by Jiabin Xu and published by . This book was released on 2013 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Computer simulations for investigating protein folding and evolution are presented. In chapter 1, an all-atom model with a knowledge-based potential is used to study the folding kinetics of Formin-Binding protein. We study the folding kinetics by performing Monte Carlo simulations. We examine the order of formation of two beta-hairpins, the folding mechanism of each individual beta-hairpin, and transition state ensemble (TSE) and compare our results with experimental data and previous computational studies. Further, a rigorous Pfold analysis is used to obtain representative samples of the TSEs showing good quantitative agreement between experimental and simulated phi values.

Download or read book Monte Carlo Simulations for NMR based Protein Structure Determination Aqueous Interfacial Properties and Pressure volume Curves written by Becky Lynn Eggimann and published by . This book was released on 2006 with total page 366 pages. Available in PDF, EPUB and Kindle. Book excerpt: