Download or read book MOLPHY Programs for Molecular Phylogenetics I written by Jun Adachi and published by . This book was released on 1992 with total page 82 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Molecular Evolution and Phylogenetics written by Masatoshi Nei and published by Oxford University Press. This book was released on 2000-07-27 with total page 444 pages. Available in PDF, EPUB and Kindle. Book excerpt: During the last ten years, remarkable progress has occurred in the study of molecular evolution. Among the most important factors that are responsible for this progress are the development of new statistical methods and advances in computational technology. In particular, phylogenetic analysis of DNA or protein sequences has become a powerful tool for studying molecular evolution. Along with this developing technology, the application of the new statistical and computational methods has become more complicated and there is no comprehensive volume that treats these methods in depth. Molecular Evolution and Phylogenetics fills this gap and present various statistical methods that are easily accessible to general biologists as well as biochemists, bioinformatists and graduate students. The text covers measurement of sequence divergence, construction of phylogenetic trees, statistical tests for detection of positive Darwinian selection, inference of ancestral amino acid sequences, construction of linearized trees, and analysis of allele frequency data. Emphasis is given to practical methods of data analysis, and methods can be learned by working through numerical examples using the computer program MEGA2 that is provided.
Download or read book MOLPHY Version 2 3 written by Jun Adachi and published by . This book was released on 1996 with total page 162 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Bioinformatics and Phylogenetics written by Tandy Warnow and published by Springer. This book was released on 2019-04-08 with total page 426 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume presents a compelling collection of state-of-the-art work in algorithmic computational biology, honoring the legacy of Professor Bernard M.E. Moret in this field. Reflecting the wide-ranging influences of Prof. Moret’s research, the coverage encompasses such areas as phylogenetic tree and network estimation, genome rearrangements, cancer phylogeny, species trees, divide-and-conquer strategies, and integer linear programming. Each self-contained chapter provides an introduction to a cutting-edge problem of particular computational and mathematical interest. Topics and features: addresses the challenges in developing accurate and efficient software for the NP-hard maximum likelihood phylogeny estimation problem; describes the inference of species trees, covering strategies to scale phylogeny estimation methods to large datasets, and the construction of taxonomic supertrees; discusses the inference of ultrametric distances from additive distance matrices, and the inference of ancestral genomes under genome rearrangement events; reviews different techniques for inferring evolutionary histories in cancer, from the use of chromosomal rearrangements to tumor phylogenetics approaches; examines problems in phylogenetic networks, including questions relating to discrete mathematics, and issues of statistical estimation; highlights how evolution can provide a framework within which to understand comparative and functional genomics; provides an introduction to Integer Linear Programming and its use in computational biology, including its use for solving the Traveling Salesman Problem. Offering an invaluable source of insights for computer scientists, applied mathematicians, and statisticians, this illuminating volume will also prove useful for graduate courses on computational biology and bioinformatics.
Download or read book Molecular Endocrinology of Fish written by and published by Academic Press. This book was released on 1994-12-23 with total page 547 pages. Available in PDF, EPUB and Kindle. Book excerpt: Hormones have a manifold impact upon growth and metabolism. This book focuses upon the molecular biology of fish hormones and their regulation. Chapters dealing with gonadotropin, corticotropin, vasotocin, isotocin, somatolactin, and other hormones are written by an international team of fish physiologists and endocrinologists. In addition, there are chapters that survey a growing literature on the ways hormones are regulated both in terms of their actions and in terms of the gene transcription that leads to their formation. The first two sections of the book covers brain and pituitary hormones and the latter two sections are devoted to other hormones and their regulation. As more and more endocrinologists and physiologists seek to use hormones that are inexpensive, provide for more facile experimental replication, and are less subject to cumbersome regulation, they will turn to the sorts of fish models reviewed in this book.
Download or read book Analysis of Amino Acid Sequences written by and published by Elsevier. This book was released on 2000-05-23 with total page 499 pages. Available in PDF, EPUB and Kindle. Book excerpt: Amino acid sequence analysis is useful for the study of problems ranging from modifications of single molecules to complex networks and interactions of species. Many available amino acid sequences are providing the basis for various studies at the proteome level.The dynamics of protein expression and the simulation of complex biological systems in which proteins interact with certain kinetics and in their respective compartments are just about to be tackled. Amino acid sequences will be crucial reference points for such studies. - Mass spectrometric analysis of proteins - Protein sequence databases - Amino acid substitution matrices - Amino acid-based phylogeny and alignment - Individual variation in protein-coding sequences of the human genome - Identifying nature's protein Lego® set
Download or read book Avian Molecular Evolution and Systematics written by David P. Mindell and published by Academic Press. This book was released on 1997-05-13 with total page 403 pages. Available in PDF, EPUB and Kindle. Book excerpt: The use of DNA and other biological macromolecules has revolutionized systematic studies of evolutionary history. Methods that use sequences of nucleotides and amino acids are now routinely used as data for addressing evolutionary questions that, although not new questions, have defied description and analysis. The world-renowned contributors use these new methods to unravel particular aspects of the evolutionary history of birds. Avian Molecular Evolution and Systematics presents an overview of the theory and application of molecular systematics, focusing on the phylogeny and evolutionary biology of birds. New, developing areas in the phylogeny of birds at multiple taxonomic areas are covered, as well as methods of analysis for molecular data, evolutionary genetics within and between bird populations, and the application of molecular-based phylogenies to broader questions of evolution. - Contains authoritative contributions from leading researchers - Discusses the utility of different molecular markers for questions of avian evolution, involving populations and higher-level taxa - Applies molecular-based phylogenies of birds and molecular population genetics data to broad questions of organismal and molecular evolution. - Compares and contrasts molecular and morphological data sets
Download or read book The Internet for Molecular Biologists written by Clare E. Sansom and published by Oxford University Press. This book was released on 2004-01-29 with total page 280 pages. Available in PDF, EPUB and Kindle. Book excerpt: This resource aims to help the practitioners of the "new biology" revolution, the molecular biologists who are more at home at a laboratory bench than in front of a computer keyboard, to use the Internet more effectively. It provides a broad introductionto using Internet based computing resources to support research in molecular biology.
Download or read book Molecular Evolution written by Ziheng Yang and published by Oxford University Press. This book was released on 2014 with total page 509 pages. Available in PDF, EPUB and Kindle. Book excerpt: Studies of evolution at the molecular level have experienced phenomenal growth in the last few decades, due to rapid accumulation of genetic sequence data, improved computer hardware and software, and the development of sophisticated analytical methods. The flood of genomic data has generated an acute need for powerful statistical methods and efficient computational algorithms to enable their effective analysis and interpretation. Molecular Evolution: a statistical approach presents and explains modern statistical methods and computational algorithms for the comparative analysis of genetic sequence data in the fields of molecular evolution, molecular phylogenetics, statistical phylogeography, and comparative genomics. Written by an expert in the field, the book emphasizes conceptual understanding rather than mathematical proofs. The text is enlivened with numerous examples of real data analysis and numerical calculations to illustrate the theory, in addition to the working problems at the end of each chapter. The coverage of maximum likelihood and Bayesian methods are in particular up-to-date, comprehensive, and authoritative. This advanced textbook is aimed at graduate level students and professional researchers (both empiricists and theoreticians) in the fields of bioinformatics and computational biology, statistical genomics, evolutionary biology, molecular systematics, and population genetics. It will also be of relevance and use to a wider audience of applied statisticians, mathematicians, and computer scientists working in computational biology.
Download or read book The Phylogenetic Handbook written by Marco Salemi and published by Cambridge University Press. This book was released on 2003-08-27 with total page 456 pages. Available in PDF, EPUB and Kindle. Book excerpt: Sample Text
Download or read book Molecular Breeding of Forage Crops written by German Spangenberg and published by Springer Science & Business Media. This book was released on 2013-04-17 with total page 345 pages. Available in PDF, EPUB and Kindle. Book excerpt: Forage plant breeding has entered the genome era. This timely book reviews the latest advances in the development and application of molecular technologies which supplement conventional breeding efforts for our major forage crops. It describes the plethora of new technologies and tools now available for high-throughput gene discovery, genome-wide gene expression analysis, production of transgenic plants, genome analysis and marker-assisted selection as applied to forage plants. Detailed accounts are presented of current and future opportunities for innovative applications of these molecular tools and technologies in the identification, functional characterisation, and use of valuable genes in forage production systems and beyond. This book represents a valuable resource for plant breeders, geneticists, and molecular biologists, and will be of particular relevance to advanced undergraduates, postgraduates, and researchers with an interest in forage legumes and grasses.
Download or read book Field Programmable Logic and Application written by Jürgen Becker and published by Springer Science & Business Media. This book was released on 2004-08-19 with total page 1226 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 14th International Conference on Field-Programmable Logic, FPL 2003, held in Leuven, Belgium in August/September 2004. The 78 revised full papers, 45 revised short papers, and 29 poster abstracts presented together with 3 keynote contributions and 3 tutorial summaries were carefully reviewed and selected from 285 papers submitted. The papers are organized in topical sections on organic and biologic computing, security and cryptography, platform-based design, algorithms and architectures, acceleration application, architecture, physical design, arithmetic, multitasking, circuit technology, network processing, testing, applications, signal processing, computational models and compiler, dynamic reconfiguration, networks and optimisation algorithms, system-on-chip, high-speed design, image processing, network-on-chip, power-aware design, IP-based design, co-processing architectures, system level design, physical interconnect, computational models, cryptography and compression, network applications and architecture, and debugging and test.
Download or read book Molecular Microbial Ecology written by Mark Osborn and published by Garland Science. This book was released on 2004-06-02 with total page 404 pages. Available in PDF, EPUB and Kindle. Book excerpt: Microoganisms are distributed across every ecosystem, and microbial transformations are fundamental to the operation of the biosphere. Microbial ecology is the study of this interaction between microorganisms and their environment, and arguably represents one of the most important areas of biological research. Yet for many years our study of microbial flora was severely limited: the primary method of culturing microorganisms on media allowed us to study only between 0.1 and 10% of the total microbial flora in any given environment. Molecular Microbial Ecology gives a comprehensive guide to the recent revolution in the study of microorganisms in the environment. Details are given on molecular methods for isolating some of the previously uncultured and numerically dominant microbial groups. PCR-based approaches to studying prokaryotic systematics are described, including ribosomal RNA analysis and stable isotope probing. Later chapters cover DNA hybridisation techniques (including fluorescent in situ hybridisation), as well as genomic and metagenomic approaches to microbial ecology. Gathering together some of the world’s leading experts, this book provides an invaluable introduction to the modern theory and molecular methods used in studying microbial ecology.
Download or read book Current Topics in Computational Molecular Biology written by Tao Jiang and published by MIT Press. This book was released on 2002 with total page 570 pages. Available in PDF, EPUB and Kindle. Book excerpt: A survey of current topics in computational molecular biology. Computational molecular biology, or bioinformatics, draws on the disciplines of biology, mathematics, statistics, physics, chemistry, computer science, and engineering. It provides the computational support for functional genomics, which links the behavior of cells, organisms, and populations to the information encoded in the genomes, as well as for structural genomics. At the heart of all large-scale and high-throughput biotechnologies, it has a growing impact on health and medicine. This survey of computational molecular biology covers traditional topics such as protein structure modeling and sequence alignment, and more recent ones such as expression data analysis and comparative genomics. It combines algorithmic, statistical, database, and AI-based methods for studying biological problems. The book also contains an introductory chapter, as well as one on general statistical modeling and computational techniques in molecular biology. Each chapter presents a self-contained review of a specific subject. Not for sale in China, including Hong Kong.
Download or read book Tutorials in Mathematical Biosciences IV written by Avner Friedman and published by Springer. This book was released on 2008-04-26 with total page 215 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book offers an introduction to fast growing research areas in evolution of species, population genetics, ecological models, and population dynamics. It reviews the concept and methodologies of phylogenetic trees, introduces ecological models, examines a broad range of ongoing research in population dynamics, and deals with gene frequencies under the action of migration and selection. The book features computational schemes, illustrations, and mathematical theorems.
Download or read book Plant Virus Evolution written by Marilyn J. Roossinck and published by Springer Science & Business Media. This book was released on 2008-02-23 with total page 227 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides a comprehensive look at the field of plant virus evolution. It is the first book ever published on the topic. Individual chapters, written by experts in the field, cover plant virus ecology, emerging viruses, plant viruses that integrate into the host genome, population biology, evolutionary mechanisms and appropriate methods for analysis. It covers RNA viruses, DNA viruses, pararetroviruses and viroids, and presents a number of thought-provoking ideas.
