Download or read book Molecular Evolution of Dim light Visual Pigments in Neotropical Geophagine Cichlids written by Shannon Refvik and published by . This book was released on 2012 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Selection Constraint and Adaptation in the Visual Genes of Neotropical Cichlid Fishes and Other Vertebrates written by Frances Elisabeth Hauser and published by . This book was released on 2018 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: The visual system serves as a direct interface between an organism and its environment. Studies of the molecular components of the visual transduction cascade, in particular visual pigments, offer an important window into the relationship between genetic variation and organismal fitness. In this thesis, I use molecular evolutionary models as well as protein modeling and experimental characterization to assess the role of variable evolutionary rates on visual protein function. In Chapter 2, I review recent work on the ecological and evolutionary forces giving rise to the impressive variety of adaptations found in visual pigments. In Chapter 3, I use interspecific vertebrate and mammalian datasets of two visual genes (RH1 or rhodopsin, and RPE65, a retinoid isomerase) to assess different methods for estimating evolutionary rate across proteins and the reliability of inferring evolutionary conservation at individual amino acid sites, with a particular emphasis on sites implicated in impaired protein function. In Chapters 4, and 5, I narrow my focus to devote particular attention to visual pigments in Neotropical cichlids, a highly diverse clade of fishes distributed across South and Central America. In Chapter 4, I find accelerated evolutionary rates in RH1 are associated with cichlid colonization of Central America. I experimentally characterize a South American cichlid rhodopsin pigment and assess the functional consequences of a unique amino acid variant. Finally, in Chapter 5, I examine diversity in UV, violet, and blue-sensitive opsins across the Neotropical cichlids. I identify several putative pseudogenization events in the UV opsin, as well as complete loss of this opsin in several South American cichlid species. Conversely, the UV opsin was under strong purifying selection in Central American cichlids. My results also indicate a burst of episodic positive selection in the blue-sensitive opsin at the base of an ancient adaptive radiation in South American cichlids. This thesis combines computational and experimental work investigating visual pigment evolution in Neotropical cichlid fishes. More broadly, this thesis also considers the evolutionary forces governing visual gene loss and inactivation, as well as the molecular mechanisms mediating visual protein function and adaptation.
Download or read book Evolution of Visual and Non visual Pigments written by David M. Hunt and published by Springer. This book was released on 2014-10-04 with total page 278 pages. Available in PDF, EPUB and Kindle. Book excerpt: Photopigments are molecules that react to light and mediate a number of processes and behaviours in animals. Visual pigments housed within the photoreceptors of the eye, such as the rods and cones in vertebrates are the best known, however, visual pigments are increasingly being found in other tissues, including other retinal cells, the skin and the brain. Other closely related molecules from the G protein family, such as melanopsin mediate light driven processes including circadian rhythmicity and pupil constriction. This Volume examines the enormous diversity of visual pigments and traces the evolution of these G protein coupled receptors in both invertebrates and vertebrates in the context of the visual and non-visual demands dictated by a species’ ecological niche.
Download or read book Convergent Phenotypic Evolution of the Visual System Via Different Molecular Routes written by Andreas Härer and published by . This book was released on 2018 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book The Behavior Ecology and Evolution of Cichlid Fishes written by Maria E. Abate and published by Springer Nature. This book was released on 2021-09-19 with total page 832 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume constitutes the most recent and most comprehensive consideration of the largest family of bony fishes, the Cichlidae. This book offers an integrated perspective of cichlid fishes ranging from conservation of threatened species to management of cichlids as invasive species themselves. Long-standing models of taxonomy and systematics are subjected to the most recent applications and interpretations of molecular evidence and multivariate analyses; and cichlid adaptive radiations at different scales are elucidated. The incredible diversity of endemic cichlid species in African lakes is revisited as possible examples of sympatric speciation and as serious cases for management in complex anthropogenic environments. Extreme hydrology and bathymetry as driver of micro-allopatric speciation is explored in the African riverine hotspot of diversity of the lower Congo River. Dramatic new molecular evidence draws attention to the complex taxonomy and systematics of Neotropical cichlids including the crater lakes of Central America. Molecular genetics, genomics, imaging tools and field study techniques assess the roles of natural, sexual and kin selection in shaping cichlid traits and beyond. The complex behavioral adaptations of cichlids are considered from a number of sub-disciplines including sensory biology, neurobiology, development, and evolutionary ecology. Most importantly, this volume puts forth a wealth of new interpretations, explanatory hypotheses and proposals for practical management and applications that will shape the future for these remarkable fishes in nature as well as their use as models for the study of biology.
Download or read book The Cichlid Fishes written by George Barlow and published by Basic Books. This book was released on 2008-12-15 with total page 362 pages. Available in PDF, EPUB and Kindle. Book excerpt: Cichlid fishes are amazing creatures. In terms of sheer number of species, they are the most successful of all families of vertebrate animals, and the extent and speed with which they have evolved in some African lakes has made them the darlings of evolutionary biologists. But what truly captivates biologists like George Barlow -- not to mention thousands of aquarists the world over -- is the complexity of their social lives and their devotion to family (most species of cichlids are monogamous and many pairs share the responsibility of raising offspring). In this wonderful book, Barlow describes the unusually high intelligence of these fishes, their complex mating and parenting rituals, their bizarre feeding and fighting habits, and the unusual adaptations and explosive rate of speciation that have enabled them to proliferate and flourish. A celebration of their diversity, The Cichlid Fishes is also a marvelous exploration of how these unique animals might help resolve the age-old puzzle of how species arise and evolve.
Download or read book Historical Biogeography of Neotropical Freshwater Fishes written by James S. Albert and published by Univ of California Press. This book was released on 2011-03-08 with total page 406 pages. Available in PDF, EPUB and Kindle. Book excerpt: The fish faunas of continental South and Central America constitute one of the greatest concentrations of aquatic diversity on Earth, consisting of about 10 percent of all living vertebrate species. Historical Biogeography of Neotropical Freshwater Fishes explores the evolutionary origins of this unique ecosystem. The chapters address central themes in the study of tropical biodiversity: why is the Amazon basin home to so many distinct evolutionary lineages? What roles do ecological specialization, speciation, and extinction play in the formation of regional assemblages? How do dispersal barriers contribute to isolation and diversification? Focusing on whole faunas rather than individual taxonomic groups, this volume shows that the area’s high regional diversity is not the result of recent diversification in lowland tropical rainforests. Rather, it is the product of species accumulating over tens of millions of years and across a continental arena.
Download or read book Evolution since Darwin written by Walter Eanes and published by Sinauer. This book was released on 2010-09-29 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Evolution since Darwin: The First 150 Years comprises 22 chapters and eight shorter commentaries that emerged from a symposium held in November 2009 at Stony Brook University, USA. Thirty-nine authors from 22 universities and two museums in five countries write on areas of evolutionary biology and related topics on which their research focuses. Their essays cover the history of evolutionary biology, populations, genes and genomes, evolution of form, adaptation and speciation, diversification and phylogeny, paleobiology, human cultural and biological evolution, and applied evolution. The volume summarizes progress in major areas of research in evolutionary biology since Darwin, reviewing the current state of knowledge and active research in those areas, and looking toward the future of the broader field.
Download or read book The Cichlids of Surinam Teleostei Labroidei written by Kullander and published by BRILL. This book was released on 2022-10-31 with total page 288 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Freshwater Biodiversity written by David Dudgeon and published by Cambridge University Press. This book was released on 2020-05-21 with total page 517 pages. Available in PDF, EPUB and Kindle. Book excerpt: Growing human populations and higher demands for water impose increasing impacts and stresses upon freshwater biodiversity. Their combined effects have made these animals more endangered than their terrestrial and marine counterparts. Overuse and contamination of water, overexploitation and overfishing, introduction of alien species, and alteration of natural flow regimes have led to a 'great thinning' and declines in abundance of freshwater animals, a 'great shrinking' in body size with reductions in large species, and a 'great mixing' whereby the spread of introduced species has tended to homogenize previously dissimilar communities in different parts of the world. Climate change and warming temperatures will alter global water availability, and exacerbate the other threat factors. What conservation action is needed to halt or reverse these trends, and preserve freshwater biodiversity in a rapidly changing world? This book offers the tools and approaches that can be deployed to help conserve freshwater biodiversity.
Download or read book Phylogeny and Classification of Neotropical Fishes written by Luiz R. Malabarba and published by Edipucrs. This book was released on 1998 with total page 624 pages. Available in PDF, EPUB and Kindle. Book excerpt: Neotropical ichthyology: an overview; Fossils and geological evidence; The stage for neotropical fish diversification: a history of tropical south american rivers; The temporal context for the diversification of neotropical fishes; Phylogeny of fossil characiformes and paleobiogeography of the Tremembe formation, Sao Paulo; Brazil; Maastrichtian to early late paleocene freshwater osteichthyes of Bolivia: additions and comments; Characiformes; Higher lever phylogenetic concepts within characiforms (Ostariophysi), a historical review; Relationships of the characidiinae and phylogeny of characiform fishes (Teleostei: ostariophysi); Phylogenetic study of the hemiodontidae (Ostariophysi: characiformes); Perspectives about the phylogeny and classification of the chacidae (Teleostei: Characiformes); Relationships of the tribes and genera of the glandulocaudinae (Ostariophysi: characiformes: characidae) with a description of a New Genus, Chrysobrycon; Monophyly of the Cheirodontinae, characters and major clades (Ostariophysi: characidae); Sperm ultrastructure in characid fishes (Teleostei: ostariophysi); The genus Creagrutus (Teleostei: Characiformes: Characidae): monophyly, relationships, and undetected diversity; A phylogenetic analysis of Roestes Gunther and Gilbertolus Eigenmann, with a hypothesis on the relationships of the Cynodontidae and Acestrorhynchidae (Teleostei: Ostariophysi: Characiformes); Siluriformes; Phylogenetic relationships of neotropical siluriformes: historical overview and synthesis of hypotheses; Monophyly and interrelationships of the Centromochlinae (Siluriformes: Auchenipteridae); Systematics, biogeography, and the fossil record of the Callichthyidae: a review of the available data; Phylogenetic relationships of the Loricariidae (Siluriformes) based on mitochondrial rRNA gene sequences; Conflict and resolution: impact of new taxa on phylogenetic studies of the neotropical cascudinhos (Siluroidei: Loricariidae); Gymnotiformes; The Gymnotiform "Eels" of tropical America: a history of classification and phylogeny of the South American electric Knifefishes (Teleostei: Ostariophysi: Siluriphysi); Phylogenetic systematics of Gymnotiformes with diagnoses of 58 clades: a review of available data; The phylogenetic position of the South America Electric Fish genera Sternophygus and Archolaemus (Ostariophysi: Gymnotiformes) according to 12s and 16s mitochondrial DNA sequences; Perciformes; A phylogeny and classfication of the South American Cichlidae (Teleostei: Perciformes); Molecular phylogeny of neotropical cichlids: the relationships of Cichlasomines and heroines; Mitochondrial phylogenetics, biogeography, and evolution of parental care and mating systems in Gymnogeophagus (Perciformes: Cichlidae); Atherinomorpha; Phylogenetic systematics and historical biogeography of the neotropical silverside family Atheronopsidae (Teleostei: Atheriniformes); Phylogeny and classification of the Cyprinodontiformes (Euteleostei: Atherinomorpha): a reappraisal; Phylogeny and classification of the Anablepidae (Teleostei: Cyprinodontiformes); Cytogenetic markers; Cytogenetic markers in neotropical freshwater fishes.
Download or read book Cichlid Fishes written by M.H. Keenleyside and published by Springer Science & Business Media. This book was released on 1991-05-31 with total page 408 pages. Available in PDF, EPUB and Kindle. Book excerpt: The cichlid fishes are an important group, being widely used in scientific research and as popular fish with aquarists. This group contains mainly small species which adjust quickly to captivity, exhibiting a readiness to breed and long periods of parental care for the young. This books comprehensive volume describes the current knowledge on the behaviour and ecology of the cichlid fishes.
Download or read book A Revision of the South American Cichlid Genus Cichlasoma Teleostei Cichlid written by Sven O. Kullander and published by . This book was released on 1983 with total page 340 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Cichlid Atlas Natural history of South American dwarf cichlids written by Uwe Römer and published by . This book was released on 2001 with total page 1320 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Nonparametric Statistical Methods Using R written by John Kloke and published by CRC Press. This book was released on 2014-10-09 with total page 283 pages. Available in PDF, EPUB and Kindle. Book excerpt: A Practical Guide to Implementing Nonparametric and Rank-Based Procedures Nonparametric Statistical Methods Using R covers traditional nonparametric methods and rank-based analyses, including estimation and inference for models ranging from simple location models to general linear and nonlinear models for uncorrelated and correlated responses. The authors emphasize applications and statistical computation. They illustrate the methods with many real and simulated data examples using R, including the packages Rfit and npsm. The book first gives an overview of the R language and basic statistical concepts before discussing nonparametrics. It presents rank-based methods for one- and two-sample problems, procedures for regression models, computation for general fixed-effects ANOVA and ANCOVA models, and time-to-event analyses. The last two chapters cover more advanced material, including high breakdown fits for general regression models and rank-based inference for cluster correlated data. The book can be used as a primary text or supplement in a course on applied nonparametric or robust procedures and as a reference for researchers who need to implement nonparametric and rank-based methods in practice. Through numerous examples, it shows readers how to apply these methods using R.
Download or read book Cichlid Fishes of the Amazon River Drainage of Peru written by Sven O. Kullander and published by . This book was released on 1986 with total page 440 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book The Cichlid Fishes of the Great Lakes of Africa Their Biology and Evolution written by Geoffrey Fryer and published by . This book was released on 1972 with total page 698 pages. Available in PDF, EPUB and Kindle. Book excerpt:
