Download or read book Biomedical Text Mining written by Kalpana Raja and published by Springer Nature. This book was released on 2022-06-17 with total page 324 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume details step-by-step instructions on biomedical literature mining protocols. Chapters guide readers through various topics such as, disease comorbidity, literature-based discovery, protocols to combine literature mining, machine learning for predicting biomedical discoveries, and uncovering unknown public knowledge by combining two pieces of information from different sets of PubMed articles. Additional chapters discuss the importance of data science to understand outbreaks such as COVID-19. Written in the format of the highly successful Methods in Molecular Biology series, each chapter includes an introduction to the topic, lists necessary materials and reagents, includes tips on troubleshooting and known pitfalls, and step-by-step, readily reproducible protocols. Authoritative and cutting-edge, Biomedical Text Mining aims to be a useful practical guide to researches to help further their studies.
Download or read book Mining the Biomedical Literature written by Hagit Shatkay and published by MIT Press. This book was released on 2012 with total page 151 pages. Available in PDF, EPUB and Kindle. Book excerpt: The authors offer an accessible introduction to key ideas in biomedical text mining. The chapters cover such topics as the sources of biomedical text; text-analysis methods in natural language processing; the tasks of information extraction, information retrieval, and text categorization; and methods for empirically assessing textmining systems.
Download or read book Biomedical Literature Mining written by Vinod D. Kumar and published by Humana. This book was released on 2016-09-24 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biomedical Literature Mining, discusses the multiple facets of modern biomedical literature mining and its many applications in genomics and systems biology. The volume is divided into three sections focusing on information retrieval, integrated text-mining approaches and domain-specific mining methods. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols and key tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Biomedical Literature Mining is designed as a useful bioinformatics resource in biomedical literature text mining for both those long experienced in or entirely new to, the field.
Download or read book Clinical Text Mining written by Hercules Dalianis and published by Springer. This book was released on 2018-05-14 with total page 192 pages. Available in PDF, EPUB and Kindle. Book excerpt: This open access book describes the results of natural language processing and machine learning methods applied to clinical text from electronic patient records. It is divided into twelve chapters. Chapters 1-4 discuss the history and background of the original paper-based patient records, their purpose, and how they are written and structured. These initial chapters do not require any technical or medical background knowledge. The remaining eight chapters are more technical in nature and describe various medical classifications and terminologies such as ICD diagnosis codes, SNOMED CT, MeSH, UMLS, and ATC. Chapters 5-10 cover basic tools for natural language processing and information retrieval, and how to apply them to clinical text. The difference between rule-based and machine learning-based methods, as well as between supervised and unsupervised machine learning methods, are also explained. Next, ethical concerns regarding the use of sensitive patient records for research purposes are discussed, including methods for de-identifying electronic patient records and safely storing patient records. The book’s closing chapters present a number of applications in clinical text mining and summarise the lessons learned from the previous chapters. The book provides a comprehensive overview of technical issues arising in clinical text mining, and offers a valuable guide for advanced students in health informatics, computational linguistics, and information retrieval, and for researchers entering these fields.
Download or read book Mining relations from the biomedical literature written by and published by . This book was released on 2009 with total page 169 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Biomedical Data Mining for Information Retrieval written by Sujata Dash and published by John Wiley & Sons. This book was released on 2021-08-24 with total page 450 pages. Available in PDF, EPUB and Kindle. Book excerpt: BIOMEDICAL DATA MINING FOR INFORMATION RETRIEVAL This book not only emphasizes traditional computational techniques, but discusses data mining, biomedical image processing, information retrieval with broad coverage of basic scientific applications. Biomedical Data Mining for Information Retrieval comprehensively covers the topic of mining biomedical text, images and visual features towards information retrieval. Biomedical and health informatics is an emerging field of research at the intersection of information science, computer science, and healthcare and brings tremendous opportunities and challenges due to easily available and abundant biomedical data for further analysis. The aim of healthcare informatics is to ensure the high-quality, efficient healthcare, better treatment and quality of life by analyzing biomedical and healthcare data including patient’s data, electronic health records (EHRs) and lifestyle. Previously, it was a common requirement to have a domain expert to develop a model for biomedical or healthcare; however, recent advancements in representation learning algorithms allows us to automatically to develop the model. Biomedical image mining, a novel research area, due to the vast amount of available biomedical images, increasingly generates and stores digitally. These images are mainly in the form of computed tomography (CT), X-ray, nuclear medicine imaging (PET, SPECT), magnetic resonance imaging (MRI) and ultrasound. Patients’ biomedical images can be digitized using data mining techniques and may help in answering several important and critical questions relating to healthcare. Image mining in medicine can help to uncover new relationships between data and reveal new useful information that can be helpful for doctors in treating their patients. Audience Researchers in various fields including computer science, medical informatics, healthcare IOT, artificial intelligence, machine learning, image processing, clinical big data analytics.
Download or read book Data Mining and Medical Knowledge Management Cases and Applications written by Berka, Petr and published by IGI Global. This book was released on 2009-02-28 with total page 464 pages. Available in PDF, EPUB and Kindle. Book excerpt: The healthcare industry produces a constant flow of data, creating a need for deep analysis of databases through data mining tools and techniques resulting in expanded medical research, diagnosis, and treatment. Data Mining and Medical Knowledge Management: Cases and Applications presents case studies on applications of various modern data mining methods in several important areas of medicine, covering classical data mining methods, elaborated approaches related to mining in electroencephalogram and electrocardiogram data, and methods related to mining in genetic data. A premier resource for those involved in data mining and medical knowledge management, this book tackles ethical issues related to cost-sensitive learning in medicine and produces theoretical contributions concerning general problems of data, information, knowledge, and ontologies.
Download or read book Mining the Biomedical Literature written by Hagit Shatkay and published by MIT Press. This book was released on 2012-08-10 with total page 151 pages. Available in PDF, EPUB and Kindle. Book excerpt: A concise introduction to fundamental methods for finding and extracting relevant information from the ever-increasing amounts of biomedical text available The introduction of high-throughput methods has transformed biology into a data-rich science. Knowledge about biological entities and processes has traditionally been acquired by thousands of scientists through decades of experimentation and analysis. The current abundance of biomedical data is accompanied by the creation and quick dissemination of new information. Much of this information and knowledge, however, is represented only in text form—in the biomedical literature, lab notebooks, Web pages, and other sources. Researchers' need to find relevant information in the vast amounts of text has created a surge of interest in automated text-analysis. In this book, Hagit Shatkay and Mark Craven offer a concise and accessible introduction to key ideas in biomedical text mining. The chapters cover such topics as the relevant sources of biomedical text; text-analysis methods in natural language processing; the tasks of information extraction, information retrieval, and text categorization; and methods for empirically assessing text-mining systems. Finally, the authors describe several applications that recognize entities in text and link them to other entities and data resources, support the curation of structured databases, and make use of text to enable further prediction and discovery.
Download or read book Text Mining the Biomedical Literature written by and published by . This book was released on 2007 with total page 381 pages. Available in PDF, EPUB and Kindle. Book excerpt: Text mining of the biomedical literature provides patterns of relationships among concepts, people, and institutions, offering enhanced medical/technical intelligence unobtainable by other means. This report describes myriad text mining capabilities. Section 1 covers biomedical knowledge management, the role of text mining in knowledge management, and describes the cultural changes and global agreements required to allow the full power and capabilities of text mining to be utilized. The next two sections address information retrieval issues. Section 2 describes the extraction of useful information from the published biomedical literature. Section 3 describes the information content in different record fields in a major medical database. The next four sections address computational linguistics issues, especially related to identifying patterns and relationships in text. Section 4 outlines a family of methods for generating radical biomedical discovery from the literature. Section 5 shows how increasing specialization within the biomedical community creates roadblocks for the acceleration of radical discovery, and recommends ways to eliminate these roadblocks. Section 6 describes the detection of unexpected asymmetries from the biomedical literature, with a specific example on bilateral organ cancer incidence asymmetry detection. Section 7 describes a unique approach for removing words/phrases of low technical content and improving the quality of the resulting technical taxonomies. Section 8 describes the use and misuse of citation analysis in biomedical text mining. Section 9 describes citation mining. Section 10 describes the use of citation analysis to evaluate the quality of research performers. Section 11 shows a systematic approach for defining the seminal literature of any biomedical topic. Sections 12 and 13 describe the differences between highly and poorly cited biomedical articles, with specific case studies from leading medical journals.
Download or read book Data Mining in Biomedicine written by Panos M. Pardalos and published by Springer Science & Business Media. This book was released on 2008-12-10 with total page 577 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume presents an extensive collection of contributions covering aspects of the exciting and important research field of data mining techniques in biomedicine. Coverage includes new approaches for the analysis of biomedical data; applications of data mining techniques to real-life problems in medical practice; comprehensive reviews of recent trends in the field. The book addresses incorporation of data mining in fundamental areas of biomedical research: genomics, proteomics, protein characterization, and neuroscience.
Download or read book Process Mining in Healthcare written by Ronny S. Mans and published by Springer. This book was released on 2015-03-12 with total page 99 pages. Available in PDF, EPUB and Kindle. Book excerpt: What are the possibilities for process mining in hospitals? In this book the authors provide an answer to this question by presenting a healthcare reference model that outlines all the different classes of data that are potentially available for process mining in healthcare and the relationships between them. Subsequently, based on this reference model, they explain the application opportunities for process mining in this domain and discuss the various kinds of analyses that can be performed. They focus on organizational healthcare processes rather than medical treatment processes. The combination of event data and process mining techniques allows them to analyze the operational processes within a hospital based on facts, thus providing a solid basis for managing and improving processes within hospitals. To this end, they also explicitly elaborate on data quality issues that are relevant for the data aspects of the healthcare reference model. This book mainly targets advanced professionals involved in areas related to business process management, business intelligence, data mining, and business process redesign for healthcare systems as well as graduate students specializing in healthcare information systems and process analysis.
Download or read book Data Mining in Biomedical Imaging Signaling and Systems written by Sumeet Dua and published by Auerbach Publications. This book was released on 2011-05-16 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Data mining can help pinpoint hidden information in medical data and accurately differentiate pathological from normal data. It can help to extract hidden features from patient groups and disease states and can aid in automated decision making. Data Mining in Biomedical Imaging, Signaling, and Systems provides an in-depth examination of the biomedical and clinical applications of data mining. It supplies examples of frequently encountered heterogeneous data modalities and details the applicability of data mining approaches used to address the computational challenges in analyzing complex data. The book details feature extraction techniques and covers several critical feature descriptors. As machine learning is employed in many diagnostic applications, it covers the fundamentals, evaluation measures, and challenges of supervised and unsupervised learning methods. Both feature extraction and supervised learning are discussed as they apply to seizure-related patterns in epilepsy patients. Other specific disorders are also examined with regard to the value of data mining for refining clinical diagnoses, including depression and recurring migraines. The diagnosis and grading of the world’s fourth most serious health threat, depression, and analysis of acoustic properties that can distinguish depressed speech from normal are also described. Although a migraine is a complex neurological disorder, the text demonstrates how metabonomics can be effectively applied to clinical practice. The authors review alignment-based clustering approaches, techniques for automatic analysis of biofilm images, and applications of medical text mining, including text classification applied to medical reports. The identification and classification of two life-threatening heart abnormalities, arrhythmia and ischemia, are addressed, and a unique segmentation method for mining a 3-D imaging biomarker, exemplified by evaluation of osteoarthritis, is also presented. Given the widespread deployment of complex biomedical systems, the authors discuss system-engineering principles in a proposal for a design of reliable systems. This comprehensive volume demonstrates the broad scope of uses for data mining and includes detailed strategies and methodologies for analyzing data from biomedical images, signals, and systems.
Download or read book Medical Informatics written by Hsinchun Chen and published by Springer Science & Business Media. This book was released on 2006-07-19 with total page 656 pages. Available in PDF, EPUB and Kindle. Book excerpt: Comprehensively presents the foundations and leading application research in medical informatics/biomedicine. The concepts and techniques are illustrated with detailed case studies. Authors are widely recognized professors and researchers in Schools of Medicine and Information Systems from the University of Arizona, University of Washington, Columbia University, and Oregon Health & Science University. Related Springer title, Shortliffe: Medical Informatics, has sold over 8000 copies The title will be positioned at the upper division and graduate level Medical Informatics course and a reference work for practitioners in the field.
Download or read book Biological Data Mining written by Jake Y. Chen and published by CRC Press. This book was released on 2009-09-01 with total page 736 pages. Available in PDF, EPUB and Kindle. Book excerpt: Like a data-guzzling turbo engine, advanced data mining has been powering post-genome biological studies for two decades. Reflecting this growth, Biological Data Mining presents comprehensive data mining concepts, theories, and applications in current biological and medical research. Each chapter is written by a distinguished team of interdisciplin
Download or read book Text Mining Approaches for Biomedical Data written by Aditi Sharan and published by Springer Nature. This book was released on with total page 438 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Text Mining for Biology and Biomedicine written by Sophia Ananiadou and published by Artech House Publishers. This book was released on 2006 with total page 312 pages. Available in PDF, EPUB and Kindle. Book excerpt: Here's the first focused book that puts the full range of cutting-edge biological text mining techniques and tools at your command. This comprehensive volume describes the methods of natural language processing (NLP) and their applications in the biological domain, and spells out in detail the various lexical, terminological, and ontological resources now at your disposal - and how best to utilize them.
Download or read book Graph Neural Networks Foundations Frontiers and Applications written by Lingfei Wu and published by Springer Nature. This book was released on 2022-01-03 with total page 701 pages. Available in PDF, EPUB and Kindle. Book excerpt: Deep Learning models are at the core of artificial intelligence research today. It is well known that deep learning techniques are disruptive for Euclidean data, such as images or sequence data, and not immediately applicable to graph-structured data such as text. This gap has driven a wave of research for deep learning on graphs, including graph representation learning, graph generation, and graph classification. The new neural network architectures on graph-structured data (graph neural networks, GNNs in short) have performed remarkably on these tasks, demonstrated by applications in social networks, bioinformatics, and medical informatics. Despite these successes, GNNs still face many challenges ranging from the foundational methodologies to the theoretical understandings of the power of the graph representation learning. This book provides a comprehensive introduction of GNNs. It first discusses the goals of graph representation learning and then reviews the history, current developments, and future directions of GNNs. The second part presents and reviews fundamental methods and theories concerning GNNs while the third part describes various frontiers that are built on the GNNs. The book concludes with an overview of recent developments in a number of applications using GNNs. This book is suitable for a wide audience including undergraduate and graduate students, postdoctoral researchers, professors and lecturers, as well as industrial and government practitioners who are new to this area or who already have some basic background but want to learn more about advanced and promising techniques and applications.
