Download or read book Insights Into the Mating Systems of Green Turtle Populations from Molecular Parentage Analyses written by Lucy Isabel Wright and published by . This book was released on 2012 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Gaining a good understanding of marine turtle mating systems is fundamental for their effective conservation, yet there are distinct gaps in our knowledge of their breeding ecology and life history, owing largely to the difficulty in observing these highly mobile animals at sea. Whilst multiple mating by females, or polyandry, has been documented in all marine turtle species, the fitness consequences of this behaviour have not been fully investigated. Furthermore, male mating patterns, operational sex ratios and the number of males contributing to breeding populations are poorly understood, impeding accurate assessments of population viability. In this thesis, I use molecular-based parentage analysis to study, in detail, the genetic mating system of two green turtle (Chelonia mydas) populations. In the focal population in northern Cyprus, I show that, despite exhibiting a strongly female-biased hatchling sex ratio and contrary to our expectations, there are at least 1.3 breeding males to every nesting female. I go on to assess the breeding frequency of male turtles in the population and determine that males do not breed annually at this site, demonstrating that the observed relatively equal sex ratio of breeders is not the result of a few males mating every year, but that the number of breeding males in the population is greater than expected. I show that 24% of nesting females in the population produce clutches with multiple paternity, but do not detect any fitness benefits to polyandrous females, and discuss the potential role of sexual conflict in influencing female mating decisions. Finally, I reveal a high frequency of multiple paternity in green turtle clutches on Ascension Island, one of the largest green turtle rookeries in the world, and discuss possible causes of variation in the level of polyandry among marine turtle populations. The results presented here shed new light on aspects of marine turtle mating systems that are challenging to study, and illustrate the value of molecular data, not only in describing mating patterns, but in elucidating aspects of life history and behaviour that would otherwise be very difficult to ascertain.
Download or read book Conservation and the Genomics of Populations written by Fred W. Allendorf and published by Oxford University Press. This book was released on 2022-02-10 with total page 785 pages. Available in PDF, EPUB and Kindle. Book excerpt: The relentless loss of biodiversity is among the greatest problems facing the world today. The third edition of this established textbook provides an updated and comprehensive overview of the essential background, concepts, and tools required to understand how genetics can be used to conserve species, reduce threat of extinction, and manage species of ecological or commercial importance. This edition is thoroughly revised to reflect the major contribution of genomics to conservation of populations and species. It includes two new chapters: "Genetic Monitoring" and a final "Conservation Genetics in Practice" chapter that addresses the role of science and policy in conservation genetics. New genomic techniques and statistical analyses are crucial tools for the conservation geneticist. This accessible and authoritative textbook provides an essential toolkit grounded in population genetics theory, coupled with basic and applied research examples from plants, animals, and microbes. The book examines genetic and phenotypic variation in natural populations, the principles and mechanisms of evolutionary change, evolutionary response to anthropogenic change, and applications in conservation and management. Conservation and the Genomics of Populations helps demystify genetics and genomics for conservation practitioners and early career scientists, so that population genetic theory and new genomic data can help raise the bar in conserving biodiversity in the most critical 20 year period in the history of life on Earth. It is aimed at a global market of applied population geneticists, conservation practitioners, and natural resource managers working for wildlife and habitat management agencies. It will be of particular relevance and use to upper undergraduate and graduate students taking courses in conservation biology, conservation genetics, and wildlife management.
Download or read book Assessing the Composition of Green Turtle Chelonia Mydas Foraging Grounds in Australasia Using Mixed Stock Analyses written by Michael Paul Jensen and published by . This book was released on 2010 with total page 138 pages. Available in PDF, EPUB and Kindle. Book excerpt: Understanding the population dynamics in both breeding and foraging habitats is a vital part of assessing the long-term viability of any species, especially those that are highly migratory. This is particularly true for green turtles, Chelonia mydas, which are long-lived marine turtles that undergo migrations for several years as post hatchlings until they select foraging grounds, and as adults, migrate between their foraging grounds and nesting beaches. Monitoring of populations at the foraging grounds may help detect early signs of population trends that would otherwise take decades to be observed at the nesting beach. In order to gain such insights the connectivity between nesting and foraging habitats must be established. Genetic analysis of rookeries to define discrete populations (stocks), in combination with Mixed Stock Analysis (MSA) based on data from molecular markers, provides an effective approach for estimating the origin of turtles sampled away from their nesting beach. In this thesis, new investigations into the genetic structure of green turtle populations in Australasia were conducted using longer (~780 bp) mitochondrial (mt) DNA sequences, larger sample sizes and new locations. This information provided the baseline data used in Mixed Stock Analyses of the composition of foraging grounds in three regions of Australasia including Western Australia, the Great Barrier Reef (GBR) and Malaysia. In chapter 2, I review what has been learned since the first MSA studies in marine turtles more than a decade ago. Since the early 1990s, numerous studies used this method to elucidate the rookery origins of young pelagic stage turtles and of older turtles in benthic foraging grounds, in fisheries by-catch and in strandings. These studies have all shown how Mixed Stock Analysis has provided valuable new insights into the distribution of marine turtles, although in most cases the estimates are affected by large uncertainty. Several issues in the effective use of MSA need to be addressed concerning study design, sample sizes and the resolution provided by the genetic marker. Nonetheless, Mixed Stock Analysis holds great potential for monitoring population trends at oceanic and coastal foraging grounds for all size classes. Comparisons of adults and juveniles provide an opportunity to pick up early signs of shifts in the contributions of populations that may indicate population decline (or increase) (e.g., Chapter 5). Recent increases in industrial development of coastal island and offshore habitats in Western Australia (WA) have highlighted the need to better understand the dynamics of marine turtle populations in these areas. An analysis of previously sampled populations (Management Units; MUs) and four new rookeries identified two possible new Management Units in this region at Cobourg Peninsula and Cocos (Keeling) Island and grouped Browse Island with the existing MU at Scott Reef and Barrow Island to the large North West Shelf MU. These analyses used a 780 bp sequence of the mtDNA control region that encompassed the 386 bp sequence used in a previous study. The longer sequence, larger sample sizes and new locations revealed more than doubled the number of haplotypes (n = 39) than previously observed. However, this made little difference to the population genetic structure as common haplotypes were still shared among population. MSA showed that the majority (>90%) of turtles foraging at Shark Bay were from neighbouring North West Shelf rookeries, while the Cocos (Keeling) foraging ground was composed of turtles mainly from Cocos (~70%), but with some contributions from North West Shelf and possibly Scott Reef MUs. In an investigation of foraging populations in Malaysia, mtDNA sequence data were analysed from 81 immature green turtles at two foraging grounds at Mantanani Island and Layang Layang Island located northwest of Sabah, Malaysia. Previously published data from 17 Australasian green turtle populations were used as the baseline data for tracing back the origin of turtles at the two foraging grounds. The majority of these turtles originated from major rookeries in the Malaysia and Philippine Turtle Islands (~30%), and Sarawak (~60%) in north-western Borneo. These same rookeries have a long tradition of using unshaded beach hatcheries that has resulted in the production of mostly female hatchlings. This may have contributed to the 1:4 female biases seen at the two foraging grounds. The implications of hatchery practises at nesting beaches are discussed and the importance of continued monitoring and research at these foraging areas is highly recommended to improve the management of marine turtles in the region. Detailed MSA of green turtle aggregations at six major foraging grounds along the east coast of Australian were combined with data from more than 30 years of mark–recapture efforts along the Great Barrier Reef. Overall, the MSA in combination with the mark-recapture data supports a model in which the foraging aggregations are composed of individuals from the two Great Barrier Reef stocks (nGBR, sGBR) with small contributions from other stocks. The north/south transect of foraging grounds analysed spanned ~2300 km. Along this transect the main contributor shifted from being predominantly the nGBR stock at foraging grounds in Torres Strait, Clack Reef and the Howicks Group to predominantly the sGBR stock at Edgecombe Bay, Shoalwater Bay and Moreton Bay. At the most northern foraging ground in the Torres Strait, significant shifts in haplotype frequencies between juveniles and adults resulted in major shifts in the estimated stock contributions for these groups. Fewer juveniles originated from the nGBR stock and higher proportion originated from the sGBR and „other‟ stocks in comparison to adults. This trend was apparent in the four most northern foraging grounds, even in Edgecombe Bay, which had a predominance of turtles from the sGBR stock. Point estimates of contributions from the nGBR stock dropped from 0.89 in adults to 0.53 in juveniles in Torres, Strait, from 0.69 to 0.49 at Clack Reef, from 0.66 to 0.49 in the Howicks Group and from 0.10 in adults to 0.01 in juveniles at Edgecombe Bay. In contrast, at the Shoalwater Bay foraging ground the opposite was observed, with a drop in contribution from the sGBR stock from 0.98 in adults to 0.84 and 0.85 in juveniles and sub-adults, respectively, and an increase in contributions from „other‟ stocks in juveniles and sub-adults. The observed patterns at the various foraging grounds likely resulted from several causes and four possible explanations are explored, the mostly likely of which were that (i) juveniles have shifted foraging grounds as they mature, or that (ii) reduced hatching success from the main nGBR rookery at Raine Island for more than a decade has resulted in reduced recruitment into the nGBR foraging ground. The later possibility suggests a need to take action to conserve the nGBR population The combined strength of data derived from mark-recapture studies, demographic studies to determine sex, maturity and breeding status of the turtles, genetic studies to determine stock composition and satellite telemetry, are needed to provide informed assessments of foraging populations necessary for guiding sustainable management of marine turtles.
Download or read book Sea turtles in the Mediterranean Distribution threats and conservation priorities written by Paolo Casale and published by IUCN. This book was released on 2010 with total page 304 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Data Production and Analysis in Population Genomics written by Francois Pompanon and published by Humana Press. This book was released on 2012-05-28 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Population genomics is a recently emerged discipline, which aims at understanding how evolutionary processes influence genetic variation across genomes. Today, in the era of cheaper next-generation sequencing, it is no longer as daunting to obtain whole genome data for any species of interest and population genomics is now conceivable in a wide range of fields, from medicine and pharmacology to ecology and evolutionary biology. However, because of the lack of reference genome and of enough a priori data on the polymorphism, population genomics analyses of populations will still involve higher constraints for researchers working on non-model organisms, as regards the choice of the genotyping/sequencing technique or that of the analysis methods. Therefore, Data Production and Analysis in Population Genomics purposely puts emphasis on protocols and methods that are applicable to species where genomic resources are still scarce. It is divided into three convenient sections, each one tackling one of the main challenges facing scientists setting up a population genomics study. The first section helps devising a sampling and/or experimental design suitable to address the biological question of interest. The second section addresses how to implement the best genotyping or sequencing method to obtain the required data given the time and cost constraints as well as the other genetic resources already available, Finally, the last section is about making the most of the (generally huge) dataset produced by using appropriate analysis methods in order to reach a biologically relevant conclusion. Written in the successful Methods in Molecular BiologyTM series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols, advice on methodology and implementation, and notes on troubleshooting and avoiding known pitfalls. Authoritative and easily accessible, Data Production and Analysis in Population Genomics serves a wide readership by providing guidelines to help choose and implement the best experimental or analytical strategy for a given purpose.
Download or read book The Leatherback Turtle written by James R. Spotila and published by JHU Press. This book was released on 2015-10-30 with total page 246 pages. Available in PDF, EPUB and Kindle. Book excerpt: The most comprehensive book ever written on leatherback sea turtles. Weighing as much as 2,000 pounds and reaching lengths of over seven feet, leatherback turtles are the world’s largest reptile. These unusual sea turtles have a thick, pliable shell that helps them to withstand great depths—they can swim more than one thousand meters below the surface in search of food. And what food source sustains these goliaths? Their diet consists almost exclusively of jellyfish, a meal they crisscross the oceans to find. Leatherbacks have been declining in recent decades, and some predict they will be gone by the end of this century. Why? Because of two primary factors: human redevelopment of nesting beaches and commercial fishing. There are only twenty-nine index beaches in the world where these turtles nest, and there is immense pressure to develop most of them into homes or resorts. At the same time, longline and gill net fisheries continue to overwhelm waters frequented by leatherbacks. In The Leatherback Turtle, James R. Spotila and Pilar Santidrián Tomillo bring together the world’s leading experts to produce a volume that reveals the biology of the leatherback while putting a spotlight on the conservation problems and solutions related to the species. The book leaves us with options: embark on the conservation strategy laid out within its pages and save one of nature’s most splendid creations, or watch yet another magnificent species disappear.
Download or read book The Biology of Sea Turtles Volume III written by Jeanette Wyneken and published by CRC Press. This book was released on 2013-03-25 with total page 467 pages. Available in PDF, EPUB and Kindle. Book excerpt: Since the first volume of The Biology of Sea Turtles was published in 1997, the field has grown and matured in ways few of the authors would have predicted-particularly in the areas of physiology, behavior, genetics, and health. Volume III presents timely coverage of emerging areas as well as the integration of approaches and information that did n
Download or read book Molecular Ecology And Evolution The Organismal Side Selected Writings From The Avise Laboratory written by John C Avise and published by World Scientific. This book was released on 2010-08-18 with total page 584 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume is a reprinted collection of 69 “classics” from the Avise laboratory, chosen to illustrate a trademark brand of research that harnesses molecular markers to scientific studies of natural history and evolution in the wild. Spanning the early 1970s through the late 2000s, these articles trace how the author and his colleagues have used molecular genetics techniques to address multifarious conceptual topics in genetics, ecology, and evolution, in a fascinating menagerie of creatures with oft-peculiar lifestyles. The organisms described in this volume range from blind cavefish to male-pregnant pipefishes and sea spiders, from clonal armadillos to natal-homing marine turtles, from hermaphroditic sea snails to hybridizing monkeys and tree frogs, from clonal marine sponges to pseudohermaphroditic mollusks to introgressing oysters, and from endangered pocket gophers, terrapins, and sparrows to unisexual (all-female) fish species to “living-fossil” horseshoe crabs, and even to a strange little fish that routinely mates with itself. The conceptual and molecular topics addressed in this volume are also universal, ranging from punctuated equilibrium to coalescent theory to the need for greater standardization in taxonomy, from cytonuclear disequilibrium statistics to the ideas of speciation duration and sympatric speciation, from historical population demography to phylogenetic reconstructions of males' sexual ornaments, from the population genetic consequences of inbreeding to Pleistocene effects on phylogeography, and from the molecular underpinnings of null alleles to the notion of clustered mutations that arise in groups to compelling empirical evidence for the unanticipated processes of gene conversion and concerted evolution in animal mitochondrial DNA. Overall, this collection includes many of the best, most influential, sometimes controversial, occasionally provocative, always intriguing, or otherwise entertaining publications to have emerged from the Avise laboratory over the last four decades. Thus, this book conveys, through the eyes of one of the field's longstanding pioneers, what “the organismal side” of molecular ecology and evolution really means.
Download or read book An Introduction to Molecular Ecology written by Graham Rowe and published by Oxford University Press. This book was released on 2017 with total page 547 pages. Available in PDF, EPUB and Kindle. Book excerpt: Revised edition of: Introduction to molecular ecology / Trevor J. C. Beebee, Graham Rowe. 2008. 2nd ed.
Download or read book The Biology of Sea Turtles Volume II written by Peter L. Lutz and published by CRC Press. This book was released on 2002-12-17 with total page 510 pages. Available in PDF, EPUB and Kindle. Book excerpt: The success of the first volume of The Biology of Sea Turtles revealed a need for broad but comprehensive reviews of major recent advances in sea turtle biology. Biology of Sea Turtles, Volume II emphasizes practical aspects of biology that relate to sea turtle management and to changes in marine and coastal ecosystems. These topics i
Download or read book The Leatherback Turtle written by James R. Spotila and published by JHU Press. This book was released on 2015-10-30 with total page 246 pages. Available in PDF, EPUB and Kindle. Book excerpt: The most comprehensive book ever written on leatherback sea turtles. Weighing as much as 2,000 pounds and reaching lengths of over seven feet, leatherback turtles are the world’s largest reptile. These unusual sea turtles have a thick, pliable shell that helps them to withstand great depths—they can swim more than one thousand meters below the surface in search of food. And what food source sustains these goliaths? Their diet consists almost exclusively of jellyfish, a meal they crisscross the oceans to find. Leatherbacks have been declining in recent decades, and some predict they will be gone by the end of this century. Why? Because of two primary factors: human redevelopment of nesting beaches and commercial fishing. There are only twenty-nine index beaches in the world where these turtles nest, and there is immense pressure to develop most of them into homes or resorts. At the same time, longline and gill net fisheries continue to overwhelm waters frequented by leatherbacks. In The Leatherback Turtle, James R. Spotila and Pilar Santidrián Tomillo bring together the world’s leading experts to produce a volume that reveals the biology of the leatherback while putting a spotlight on the conservation problems and solutions related to the species. The book leaves us with options: embark on the conservation strategy laid out within its pages and save one of nature’s most splendid creations, or watch yet another magnificent species disappear.
Download or read book Molecular Markers Natural History and Evolution written by J. C. Avise and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 522 pages. Available in PDF, EPUB and Kindle. Book excerpt: Molecular approaches have opened new windows on a host of ecological and evolutionary disciplines, ranging from population genetics and behavioral ecology to conservation biology and systematics. Molecular Markers, Natural History and Evolution summarizes the multi-faceted discoveries about organisms in nature that have stemmed from analyses of genetic markers provided by polymorphic proteins and DNAs. The first part of the book introduces rationales for the use of molecular markers, provides a history of molecular phylogenetics, and describes a wide variety of laboratory methods and interpretative tools in the field. The second and major portion of the book provides a cornucopia of biological applications for molecular markers, organized along a scale from micro-evolutionary topics (such as forensics, parentage, kinship, population structure, and intra-specific phylogeny) to macro-evolutionary themes (including species relationships and the deeper phylogenetic structure in the tree of life). Unlike most prior books in molecular evolution, the focus is on organismal natural history and evolution, with the macromolecules being the means rather than the ends of scientific inquiry. Written as an intellectual stimulus for the advanced undergraduate, graduate student, or the practicing biologist desiring a wellspring of research ideas at the interface of molecular and organismal biology, this book presents material in a manner that is both technically straightforward, yet rich with concepts and with empirical examples from the world of nature.
Download or read book Advances in Molecular Ecology written by Gary R. Carvalho and published by IOS Press. This book was released on 1998 with total page 334 pages. Available in PDF, EPUB and Kindle. Book excerpt: Each contributor to this publication was asked to examine how molecular genetic tools have contributed to their specific areas of consideration. To increase the practical utility of the book, a summary of software that is available for the anaylsis of data in molecular ecology is included.
Download or read book Biology and Conservation of Ridley Sea Turtles written by Pamela T. Plotkin and published by JHU Press. This book was released on 2007-03 with total page 382 pages. Available in PDF, EPUB and Kindle. Book excerpt: Here Plotkin and her colleagues reveal the nature of these species and the steps needed to make sure they remain a permanent part of the marine environment.
Download or read book Advances in Marine Biology written by and published by Academic Press. This book was released on 2018-07-14 with total page 254 pages. Available in PDF, EPUB and Kindle. Book excerpt: Advances in Marine Biology, Volume 79, the latest release in a series that has been providing in-depth and up-to-date reviews on all aspects of marine biology since 1963, updates on many topics that will appeal to postgraduates and researchers in marine biology, fisheries science, ecology, zoology and biological oceanography. This latest release includes a review of patterns of multiple paternity across sea turtle rookeries, parasites and pathogens in seabirds, progress in marine genomics and bioinformatics, the rise of sea turtle research and conservation, and the potential impacts of offshore oil and gas activities on deep-sea sponges and the habitats they form. Reviews articles on the latest advances in marine biology Authored by leading figures in their respective fields of study Presents materials that are widely used by managers, students and academic professionals in the marine sciences
Download or read book Mating Systems and Conservation Biology written by Julie Patrice Rieder and published by . This book was released on 1996 with total page 112 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Ecological Genetics written by Andrew Lowe and published by John Wiley & Sons. This book was released on 2009-04-01 with total page 432 pages. Available in PDF, EPUB and Kindle. Book excerpt: Ecological Genetics addresses the fundamental problems of which of the many molecular markers should be used and how the resulting data should be analysed in clear, accessible language, suitable for upper-level undergraduates through to research-level professionals. A very accessible straightforward text to deal with this difficult topic - applying modern molecular techniques to ecological processes. Written by active researchers and teachers within the field. There will be an accompanying web site managed by the authors, comprising of worked examples, test data sets and hyperlinks to relevant web pages.
