Download or read book Insights Into Mechanisms of Redox Homeostasis in Nitrogen Fixing Azotobacter Vinelandii written by Alexander Byron Alleman and published by . This book was released on 2021 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Overuse of industrial nitrogen fertilizers causes environmental degradation through runoff, lowers soil pH, and generates greenhouse gas emissions. There is considerable interest in promoting biological nitrogen fixation (BNF) as a mechanism to reduce the inputs of nitrogen fertilizers in agriculture. However, considerable fundamental knowledge gaps need to be addressed to realize the potential impacts of BNF in agriculture. BNF is catalyzed by the enzyme nitrogenase, which requires a large amount of energy in the form of ATP and low potential electrons. Nitrogen-fixing organisms that respire aerobically have an advantage in meeting the energy demands of BNF but face challenges of protecting nitrogenase from inactivation by oxygen. The model aerobic nitrogen-fixing bacteria Azotobacter vinelandii has a unique electron transport system that accommodates excess oxygen while producing enough energy for nitrogenase. The mechanism, termed respiratory protection, consumes excess oxygen at the membrane and leads to lower oxygen accumulation in the cytosol. A. vinelandii also contains two enzymes, Rnf and Fix, that deliver reductant to nitrogenase in the form of low potential electrons. A physiological and systems-based approach was taken to understand how the dynamics of the electron transport systems are integrated to protect nitrogenase from oxygen while simultaneously creating enough energy for nitrogen fixation. A metabolic model of A. vinelandii was constructed that accurately determines growth rate under high oxygen and substrate concentrations, demonstrating the large flux directed to the respiratory protection mechanism. Interestingly, the respiratory protection mechanism is also required for accurate predictions even when ammonia is supplemented during growth, suggesting that respiratory protection might be an essential part of normal growth rather than strictly reserved for nitrogenase protection. The model has also shown how A. vinelandii can adapt under different oxygen concentrations, metal availability, and ammonia excreting phenotype by rearranging flux through the electron transport system. Through mutational studies of electron transport enzymes Rnf and Fix, Fix was shown to be required under low oxygen concentrations, and Rnf contributes to the regulation of redox homeostasis under high oxygen. Understanding the energy dynamics in aerobic nitrogen fixation will further allow the development of biotechnologies that can help supplement industrial nitrogenous fertilizer.
Download or read book Structure of the Vanadium Nitrogenase of Azotobacter Vinelandii and Mechanistic Insights Into Biological Nitrogen Fixation written by Daniel Sippel and published by . This book was released on 2017 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Abstracts of the General Meeting of the American Society for Microbiology written by American Society for Microbiology. General Meeting and published by . This book was released on 2006 with total page 740 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Catalysts for Nitrogen Fixation written by Barry E. Smith and published by Springer Science & Business Media. This book was released on 2013-03-20 with total page 351 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biological nitrogen fixation provides more than 50% of the total annual input of the essential element nitrogen to world agriculture. Thus, it is of immense agronomic importance and critical to food supplies, particularly in developing countries. This book, with chapters authored by internationally renowned experts, provides a comprehensive and detailed account of the fascinating history of the process - including the surprising discoveries of molybdenum-independent nitrogenases and superoxide-dependent nitrogenase; a review of Man's attempts to emulate the biological process - most successfully with the commercially dominant Haber-Bosch process; and the current state of the understanding art with respect to the enzymes - called nitrogenases - responsible for biological nitrogen fixation. The initial chapters use a historical approach to the biological and industrial processes, followed by an overview of assay methodologies. The next set of chapters focuses on the classical enzyme, the molybdenum nitrogenase, and details its biosynthesis, structure, composition, and mechanism of action as well as detailing both how variants of its two component proteins are constructed by recombinant DNA technology and how computational techniques are being applied. The sophisticated chemical modelling of the metal-containing clusters in the enzyme is reviewed next, followed by a description of the two molybdenum-independent nitrogenases - first, the vanadium-containing enzyme and then the iron-only nitrogenase - together with some thoughts as to why they exist! Then follows an up-to-date treatment of the clearly "non-classical" properties of the superoxide-dependent nitrogenase, which more closely resembles molybdenum-containing hydroxylases and related enzymes, like nitrate reductase, that it does the other nitrogenases. Each chapter contains an extensive list of references. This book is the self-contained first volume of a comprehensive seven-volume series. No other available work provides the up-to-date and in-depth coverage of this series and this volume. This book is intended to serve as an indispensable reference work for all scientists working in this area, including agriculture and the closely related metals-in-biology area; to assist students to enter this challenging area of research; and to provide science administrators easy access to vital relevant information.
Download or read book Prokaryotic Metabolism and Physiology written by Byung Hong Kim and published by Cambridge University Press. This book was released on 2019-05-16 with total page 509 pages. Available in PDF, EPUB and Kindle. Book excerpt: Extensive and up-to-date review of key metabolic processes in bacteria and archaea and how metabolism is regulated under various conditions.
Download or read book Climate Change and the Microbiome written by D. K. Choudhary and published by Springer Nature. This book was released on 2021-10-13 with total page 737 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book highlights the impact of climate change on the soil microbiome and its subsequent effects on plant health, soil-plant dynamics, and the ecosphere. It also discusses emerging ideas to counteract these effects, e.g., through agricultural applications of functional microbes, to ensure a sustainable ecosystem. Climate change is altering the soil microbiome distributions and thus the interactions in microbiome and plant‐soil microorganism. Improvement of our understanding of microbe-microbe and plant-microbe interaction under changing climatic conditions is essential, because the overall impact of these interactions under varying adverse environmental conditions is lacking. This book has been designed to understand the impact of climate change, i.e., mainly salt and drought stress, on the soil microbiome and its impact on plant, yield, and the ecosphere. The book is organized into four parts: The first part reviews the impact of climate change on the diversity and richness of the soil microbiome. The second part addresses effects of climate change on plant health. The third part discusses effects on soil-plant dynamics and functionality, e.g., soil productivity. The final part deals with the effects of climate change on ecosystem functioning and also discusses potential solutions. The book will appeal to students and researchers working in the area of soil science, agriculture, molecular biology, plant physiology, and biotechnology.
Download or read book Biology of the Nitrogen Cycle written by Hermann Bothe and published by Elsevier. This book was released on 2007 with total page 451 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Nitrogen Fixation in Agriculture Forestry Ecology and the Environment written by Dietrich Werner and published by Springer Science & Business Media. This book was released on 2005-10-24 with total page 380 pages. Available in PDF, EPUB and Kindle. Book excerpt: Sustainability has a major part to play in the global challenge of continued development of regions, countries, and continents all around the World and biological nitrogen fixation has a key role in this process. This volume begins with chapters specifically addressing crops of major global importance, such as soybeans, rice, and sugar cane. It continues with a second important focus, agroforestry, and describes the use and promise of both legume trees with their rhizobial symbionts and other nitrogen-fixing trees with their actinorhizal colonization. An over-arching theme of all chapters is the interaction of the plants and trees with microbes and this theme allows other aspects of soil microbiology, such as interactions with arbuscular mycorrhizal fungi and the impact of soil-stress factors on biological nitrogen fixation, to be addressed. Furthermore, a link to basic science occurs through the inclusion of chapters describing the biogeochemically important nitrogen cycle and its key relationships among nitrogen fixation, nitrification, and denitrification. The volume then provides an up-to-date view of the production of microbial inocula, especially those for legume crops.
Download or read book Respiration in Archaea and Bacteria written by Davide Zannoni and published by Springer Science & Business Media. This book was released on 2005-02-17 with total page 326 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book summarizes the achievements of the past decade in the biochemistry, bioenergetics, structural and molecular biology of respiratory processes in selected genera of the domain Bacteria along with an extensive coverage of the redox chains of extremophiles belonging to the Archaean domain. The volume is a unique piece of work since it contains a series of chapters dealing with metabolic features having important microbiological and ecological relevance such as the use of ammonium, iron, methane, sulfur and hydrogen as respiratory substrates or nitrous compounds in denitrification processes. Particular attention is also dedicated to peculiar groups of prokaryotes such as Gram positives, acetic acid bacteria, pathogens of the genera Helicobacter and Campylobacter, nitrogen fixing symbionts and free-living species, oxygenic phototrophs (Cyanobacteria) and anoxygenic (purple non-sulfur) phototrophs. The book is intended to be a long-term source of information for Ph.D. students, researchers and undergraduates from disciplines such as microbiology, biochemistry and ecology, studying basic and applied sciences, medicine and agriculture.
Download or read book Biological Nitrogen Fixation written by John Raymond Postgate and published by . This book was released on 1972 with total page 76 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Bacterial Physiology and Metabolism written by Byung Hong Kim and published by Cambridge University Press. This book was released on 2008-02-21 with total page 934 pages. Available in PDF, EPUB and Kindle. Book excerpt: Recent determination of genome sequences for a wide range of bacteria has made in-depth knowledge of prokaryotic metabolic function essential in order to give biochemical, physiological, and ecological meaning to the genomic information. Clearly describing the important metabolic processes that occur in prokaryotes under different conditions and in different environments, this advanced text provides an overview of the key cellular processes that determine bacterial roles in the environment, biotechnology, and human health. Prokaryotic structure is described as well as the means by which nutrients are transported into cells across membranes. Glucose metabolism through glycolysis and the TCA cycle are discussed, as well as other trophic variations found in prokaryotes, including the use of organic compounds, anaerobic fermentation, anaerobic respiratory processes, and photosynthesis. The regulation of metabolism through control of gene expression and control of the activity of enzymes is also covered, as well as survival mechanisms used under starvation conditions.
Download or read book Rhizosphere Engineering written by Ramesh Chandra Dubey and published by Academic Press. This book was released on 2022-02-15 with total page 566 pages. Available in PDF, EPUB and Kindle. Book excerpt: Rhizosphere Engineering is a guide to applying environmentally sound agronomic practices to improve crop yield while also protecting soil resources. Focusing on the potential and positive impacts of appropriate practices, the book includes the use of beneficial microbes, nanotechnology and metagenomics. Developing and applying techniques that not only enhance yield, but also restore the quality of soil and water using beneficial microbes such as Bacillus, Pseudomonas, vesicular-arbuscular mycorrhiza (VAM) fungi and others are covered, along with new information on utilizing nanotechnology, quorum sensing and other technologies to further advance the science. Designed to fill the gap between research and application, this book is written for advanced students, researchers and those seeking real-world insights for improving agricultural production. Explores the potential benefits of optimized rhizosphere Includes metagenomics and their emerging importance Presents insights into the use of biosurfactants
Download or read book Principles of Bioenergetics written by Vladimir P. Skulachev and published by Springer Science & Business Media. This book was released on 2012-12-15 with total page 435 pages. Available in PDF, EPUB and Kindle. Book excerpt: Principles of Bioenergetics summarizes one of the quickly growing branches of modern biochemistry. Bioenergetics concerns energy transductions occurring in living systems and this book pays special attention to molecular mechanisms of these processes. The main subject of the book is the "energy coupling membrane" which refers to inner membranes of intracellular organelles, for example, mitochondria and chloroplasts. Cellular cytoplasmic membranes where respiratory and photosynthetic energy transducers, as well as ion-transporting ATP-synthases (ATPases) are also part of this membrane. Significant attention is paid to the alternative function of mitochondria as generators of reactive oxygen species (ROS) that mediate programmed death of cells (apoptosis and necrosis) and organisms (phenoptosis). The latter process is considered as a key mechanism of aging which may be suppressed by mitochondria-targeted antioxidants.
Download or read book The Perfect Slime written by Hans-Curt Flemming and published by IWA Publishing. This book was released on 2016-09-15 with total page 336 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Perfect Slime presents the latest state of knowledge and all aspects of the Extracellular Polymeric Substances, (EPS) matrix – from the ecological and health to the antifouling perspectives. The book brings together all the current material in order to expand our understanding of the functions, properties and characteristics of the matrix as well as the possibilities to strengthen or weaken it. The EPS matrix represents the immediate environment in which biofilm organisms live. From their point of view, this matrix has paramount advantages. It allows them to stay together for extended periods and form synergistic microconsortia, it retains extracellular enzymes and turns the matrix into an external digestion system and it is a universal recycling yard, it protects them against desiccation, it allows for intense communication and represents a huge genetic archive. They can remodel their matrix, break free and eventually, they can use it as a nutrient source. The EPS matrix can be considered as one of the emergent properties of biofilms and are a major reason for the success of this form of life. Nevertheless, they have been termed the “black matter of biofilms” for good reasons. First of all: the isolation methods define the results. In most cases, only water soluble EPS components are investigated; insoluble ones such as cellulose or amyloids are much less included. In particular in environmental biofilms with many species, it is difficult to impossible isolate, separate the various EPS molecules they are encased in and to define which species produced which EPS. The regulation and the factors which trigger or inhibit EPS production are still very poorly understood. Furthermore: bacteria are not the only microorganisms to produce EPS. Archaea, Fungi and algae can also form EPS. This book investigates the questions, What is their composition, function, dynamics and regulation? What do they all have in common?
Download or read book Flavins written by Eduardo Silva and published by Royal Society of Chemistry. This book was released on 2006 with total page 335 pages. Available in PDF, EPUB and Kindle. Book excerpt: Flavins and flavoproteins are a widely investigated and highly versatile group of compounds. Participation of these compounds in photochemistry and photobiology processes are of particular importance in the fields of biology, chemistry and medicine. Written by leading experts in the field each section of the book includes a historical overview of the subject, state of the art developments and future perspectives. Flavins: Photochemistry and Photobiology begins with the properties and applications of flavins, including their photochemistry in aqueous and organic solutions. Subsequent sections discuss riboflavin as a visible light sensitizer in the photo degradation of drugs, antiviral and antibacterial effects, the role of flavins in light induced toxicity and blue light initiated DNA repair by photolyase. Finally there are sections on the flavin based photoreceptors in plants, bacteria and eukaryotic photosynthetic flagelettes. This book brings together leading experts with a unique interdisciplinary emphasis, to provide an authoritative resource on flavins and their role in photochemistry and photobiology.
Download or read book Bacterial Physiology written by Walid El-Sharoud and published by Springer Science & Business Media. This book was released on 2007-12-07 with total page 377 pages. Available in PDF, EPUB and Kindle. Book excerpt: The application of new molecular methodologies in the study of bacterial behavior and cell architecture has enabled new revolutionary insights and discoveries in these areas. This new text presents recent developments in bacterial physiology that are highly relevant to a wide range of readership including those interested in basic and applied knowledge. Its chapters are written by international scientific authorities at the forefront of the subject. The value of this recent knowledge in bacterial physiology is not only restricted to fundamental biology. It also extends to biotechnology and drug-discovery disciplines.
Download or read book Biomolecular EPR Spectroscopy written by Wilfred Raymond Hagen and published by CRC Press. This book was released on 2008-12-22 with total page 264 pages. Available in PDF, EPUB and Kindle. Book excerpt: Comprehensive, Up-to-Date Coverage of Spectroscopy Theory and its Applications to Biological SystemsAlthough a multitude of books have been published about spectroscopy, most of them only occasionally refer to biological systems and the specific problems of biomolecular EPR (bioEPR). Biomolecular EPR Spectroscopy provides a practical introduction t
