Download or read book Identification and Analysis of Interactions Among Proteins of Cauliflower Mosaic Virus written by Shaddy N. Swade and published by . This book was released on 2007 with total page 134 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Cauliflower Mosaic Virus P6 Protein Interactions written by Lindy M. Lutz and published by . This book was released on 2014 with total page 232 pages. Available in PDF, EPUB and Kindle. Book excerpt: Cauliflower mosaic virus (CaMV), one of the top ten viruses from a molecular plant pathology standpoint, is a plant pararetrovirus whose 8 kb circular double-stranded DNA genome encodes 7 different proteins (P1-P7). CaMV P6, encoded by gene VI has been implicated in a variety of functions such as: translational transactivation, host range control, symptom formation, host hypersensitive responses, RNA silencing suppressor activity, inclusion body (IB) formation and virus infectivity. Because of its multifunctional nature, P6 interacts with many host, and viral proteins including itself. P6 self-association appears to involve four domains (D1-D4). D3 has been implicated in viral infectivity and contains two RNA binding domains, separated by a highly conserved 34 amino acid spacer called D3b. CaMV mutants harboring a deletion of D3b are non-infectious, indicating its importance for viral propagation. To further analyze D3b, full-length P6 constructs were generated that harbored single amino acid substitutions within this region. In general, the mutants bound less efficiently to the individual P6 domains than wild type. Mutations near the amino-terminal end of D3b had a more detrimental effect on self-association domain binding than those near the central portion. Since P6 is an IB protein, we hypothesized that mutations in D3b may influence IB formation. P6 IBs are thought to start out as small aggregations of protein (most likely P6) and ribosomes. They acquire additional materials (viral proteins and nucleic acids) to enlarge to form small bodies. Small bodies are then thought to fuse together to form larger, mature IBs. All mutant P6s formed IBs when expressed as green fluorescent protein (GFP) fusions in transgenic cells. However, the mutant P6s that were most reduced in binding also showed decreased IB size. Hence, the mutations in D3b appear to affect the fusion of small IBs into larger ones. It is possible that IB size is important because it correlated with differences in virus host range. CaMV strain W260 has a much wider host range and more efficiently infects host plants when compared to the CM1841 isolated. Our most recent data show that CM1841 IBs are smaller than those formed by W260 P6. In addition, P6 mutants that showed decreased binding to self-association domains and smaller IB sizes also exhibited much lower total viral DNA levels in inoculated leaves. This was also reflected by systemic symptom formation. Hence, less efficient binding correlates with smaller IB size and reduced local and systemic infection for the mutants. Taken together, these data suggest that fusion of small IBs into larger ones is important for proper viral infections to occur and we have possibly identified mutants in this process. In addition, these data suggest that IB formation is required for viral infection rather than merely being a consequence of it. The CaMV genome encodes seven viral proteins including P6. P6 has been reported to interact with two other viral proteins in addition to itself. Therefore, we also examined P6 for its ability to interact with the other viral gene products. P6 was found to interact with the aphid transmission factor (P2), the virion-associated protein (P3), reverse transcriptase protein (P5), and the protein of unknown function (P7). P2 was previously reported to control the difference in IB stability between CM1841 and W260. Our data indicate that P2 from both viruses bound equally well to P6. The CM1841 P2 is less stable than its W260 counterpart. Taken together, this would suggest that the differences in IB stability for W260 and CM1841 mediated by P2 are due to variation in P2 protein stability rather than P6 binding. Binding of P6 to P3 could help the latter protein form complexes necessary for aphid transmission and virus cell-to-cell movement. P5 has a tri-partite structure with an N-terminal protease domain, a central reverse transcriptase (RT) and a C-terminal RNase H domain. Our pull-down results showed P6 could interact with full-length P5. Based on our preliminary pull-down analyses, P6 could bind inefficiently to the protease but more efficiently to the RT-RNase H (termed P5MC) portion of P5. Perhaps this interaction plays a role in P5 RT regulation. Interestingly, P5MC interactions with P5 showed a similar pattern to the P6 interactions. P5MC was able to self-associate well, but and interacted weakly with full-length P5 and the protease. P6 also interacted with P7, but the significance of this interaction is unknown. Perhaps P7 aids P6 in regulating an aspect of translational transactivation, but this is mere speculation. In addition, P6 can also interact with a variety of host factors. In collaboration with Dr. James Schoelz at the University of Missouri, we found three Arabidopsis proteins: CHUP1, C2CDMT, and FIT that interact with full-length P6. Interestingly, of the four domains involved in P6 self-association, only D2 and D4 bind to CHUP1 and C2CDMT. However, FIT was able to bind to all P6 self-association domains but best to D2. Given that it binds to other host factors, we might speculate that D2 of P6 maybe acts as a host interface domain. In summary P6 interacts with a large number of both viral and host proteins. P6 self-association is needed for proper IB formation and efficient infection. P6 interactions with each of the other viral proteins may be to modulate proper interactions of these proteins with their appropriate partners. Finally, P6 interactions with host factors may play a role in inhibiting host defenses, modulating systemic symptom formation, or mediating inter and intra cellular movement.

Download or read book Plant Virus Interactions written by Elizabeth P.B. Fontes and published by Springer Nature. This book was released on 2023-12-23 with total page 314 pages. Available in PDF, EPUB and Kindle. Book excerpt: This detailed volume provides practical guidance on techniques in plant-virus interaction research, from targeting specific molecular interactions within the virus-host interactome to the identification of the complete virus-host protein-protein interaction network. After chapters on acquiring the necessary molecular tools, the book continues with biochemical and genetic approaches to confirming protein-protein interactions both in vivo and in vitro, procedures and protocols for assessing replication, translation, viral genome movement, and insect transmission, as well as techniques for detecting multiple molecular interactions between the host and the virus and monitoring immune hubs. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step and readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and comprehensive, Plant-Virus Interactions serves as a valuable resource for understanding the protein-protein interaction network between the virus and the host, crucial for comprehending the life cycle of a virus and for developing strategies for broad-spectrum and long-lasting resistance against viral infections.

Download or read book Cauliflower Mosaic Virus ORF VI Protein written by Axel Himmelbach and published by . This book was released on 1995 with total page 88 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book The Cowpea Mosaic Virus Movement Protein written by C. M. Carvalho and published by . This book was released on 2003 with total page 87 pages. Available in PDF, EPUB and Kindle. Book excerpt: For systemic infection of a host plant, viruses multiply in the initially infected cell and spread to the neighbouring cells through plasmodesmata (cell-to-cell movement), to eventually reach the vascular system and use the phloem to spread to other plant parts (long-distance movement). To achieve cell-to-cell transport through plasmodesmata, these complex pores in the plant cell wall must be modulated to allow viral passage. Two major types of cell-to-cell transport have been described, movement of the viral genome in a non-encapsidated form, as exemplified by Tobacco mosaic virus (TMV), and?tubule-guided? movement of mature virus particles (virions), exemplified by Cowpea mosaic virus (CPMV). In both mechanisms one or more virally encoded movement proteins (MP) play an essential role in the targeting of infectious entities from the site of replication to the plasmodesmata, as well as in the subsequent modification of and transport through the modified pores. However, it is generally recognised that intercellular movement is a concerted effort of not only viral factors but also host factors, the knowledge of the latter being very scarce at the moment. With CPMV, the MP polymerises within the plasmodesmal pore into a transport tubule, through which mature virions then are delivered into the neighbouring uninfected cell. Identical tubules are also formed in single plant protoplasts that are infected with CPMV or transfected with the MP gene alone, hence, in the absence of cell wall and plasmodesmata. At the onset of the research presented in this thesis, no information about host proteins interacting with the CPMV MP was available. Such interactions were to be expected, for instance during the process of transport (targeting) of the MP from its site of synthesis to the periphery of the infected cell, the polymerisation process at the plasma membrane, and the structural modification of the plasmodesma. Thus, the research described in this thesis focused on the functioning of the CPMV MP with special emphasis on its interactions with virion proteins and host proteins. For initial studies on these interactions the property of the CPMV MP to assemble into tubules on single cell protoplasts was exploited in Chapter 2. Thus it was shown that virus particles residing in the tubule contain a single deviant species of the small coat protein (S CP) that is larger than the two forms of S CP (S-s and S-f) which are consistently found in virus present in the cytoplasm of infected cells. The nature of the deviation is not known, but the exclusive presence of this deviant S CP in virions that are being transported suggests that the S CP is in some way involved in cell-to-cell movement. Identification of host proteins in isolated tubule fractions by electrophoretic analysis was not successful, but a directed search for potential host proteins by Western blot analysis using specific antibodies indicated the presence of pectin methylesterase (PME) in the plasma membrane surrounding the tubule (Chapter 2). This protein has previously been implicated in cell-to-cell movement of other plant viruses, i.e. TMV, Cauliflower mosaic virus and Turnip vein clearing virus. The PME enzyme is involved in cell wall turnover and affects cell wall rigidity by modulating pH and ion balance. Such cell wall dynamics could be a necessity for the modification of the plasmodesmal pore to enable the insertion of a viral transport tubule. The interaction between the MP and virion proteins was further investigated in Chapter 3. Protein overlay assays and ELISA showed that the MP binds only to its homologous virions and that it is the large (L) coat protein which is involved in this binding. Considering also the deviation found in the S CP of virions within the transport tubules, it is conceivable that both CPs play a crucial but different role in the cell-to-cell movement of CPMV. A C-terminal deletion in MP, which in planta results in a mutant virus defective in cell-to-cell movement and producing tubules devoid of particles, also resulted in the abolishment of L CP binding, thus validating the in vitro binding approaches. The ability of the CPMV MP to bind nucleic acid and rNTP was analysed in Chapter 4. It is shown that MP binds rGTP but no other rNTPs, and by site-directed mutagenesis the GTP binding site was located within a sequence motif conserved among the MPs of tobamo- and comoviruses. The non-GTP-binding mutant MP exhibited disturbed intracellular targeting and tubule formation, suggesting that GTP binding may play a significant role in targeted transport and multimerization of the MP. It was also shown that the MP is capable of binding both ss-RNA and DNA, but not ds nucleic acids. The studies on possible interactions between CPMV MP and host (plasma membrane) proteins were extended in Chapter 5. To identify potential MP-binding host proteins, purified MP was used as a probe in overlay assays and affinity column chromatography to assess plasma membrane proteins for their affinity to the MP. In the blot overlay assays, candidate MP-binding proteins with apparent sizes of 34, 30 and 28 kDa were detected. Further analysis of the cowpea plasma membrane fraction using affinity chromatography also revealed a limited number of eight MP-binding proteins including again a 30 kDa protein band. Sequencing of the 30 kDa protein band revealed that it actually represented a mixture of two protein species, i.e. an aquaporin and a vacuolar-type ATPase. A possible role of these host proteins in viral MP functioning is discussed in Chapter 5. Finally, in the General Discussion (Chapter 6) the results obtained in this thesis research are discussed and integrated in a speculative model for the functioning of the CPMV MP, accommodating the different observed interactions with virion and host proteins.

Download or read book Cumulated Index Medicus written by and published by . This book was released on 2000 with total page 1764 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Annual Plant Reviews Plant Proteomics written by Christine Finnie and published by John Wiley & Sons. This book was released on 2008-04-15 with total page 272 pages. Available in PDF, EPUB and Kindle. Book excerpt: The proteome comprises all protein species resulting from geneexpression in a cell, organelle, tissue or organism. By definition,proteomics aims to identify and characterise the expressionpattern, cellular location, activity, regulation,post-translational modifications, molecular interactions, threedimensional structures and functions of each protein in abiological system. In plant science, the number of proteome studies is rapidlyexpanding after the completion of the Arabidopsis thaliana genomesequence, and proteome analyses of other important or emergingmodel systems and crop plants are in progress or are beinginitiated. Proteome analysis in plants is subject to the sameobstacles and limitations as in other organisms, but the nature ofplant tissues, with their rigid cell walls and complex variety ofsecondary metabolites, means that extra challenges are involvedthat may not be faced when analysing other organisms. This volume aims to highlight the ways in which proteome analysishas been used to probe the complexities of plant biochemistry andphysiology. It is aimed at researchers in plant biochemistry,genomics, transcriptomics and metabolomics who wish to gain anup-to-date insight into plant proteomes, the information plantproteomics can yield and the directions plant proteome research istaking.

Download or read book Plant Virus Interactions written by Tatjana Kleinow and published by Springer. This book was released on 2016-01-13 with total page 192 pages. Available in PDF, EPUB and Kindle. Book excerpt: Plant RNA– and DNA-viruses have small genomes and with this limited coding capacity exhibit a strong dependency on host cellular processes and factors to complete their viral life cycle. Various interactions of viral proteins or nucleic acids with host components (proteins, nucleic acids, carbohydrates, lipids and metabolites) evolved, which are essential for a successful systemic spread of viruses within the plant. For example, in plants, transport of endogenous macromolecules like proteins and nucleic acids occurs in a highly selective and regulated manner and viruses exploit these specifically controlled trafficking pathways. Research on plant virus movement is located at the interface of molecular plant virology and plant cell biology. The proposed book project aims to give an overview on the current state of this research and to highlight novel insights into the dynamic interplay between plant viruses and host cells. The book is intended for researchers in plant biology and virology and especially written for those who aim to understand cell biology of virus-plant interactions. ​

Download or read book Index Medicus written by and published by . This book was released on 2004 with total page 2036 pages. Available in PDF, EPUB and Kindle. Book excerpt: Vols. for 1963- include as pt. 2 of the Jan. issue: Medical subject headings.

Download or read book The Detection of Virus Cooled Proteins in Cauliflower Mosaic Virus Infected Plants and Protoplasts written by Carole Lesley Harker and published by . This book was released on 1987 with total page 384 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Biological Agricultural Index written by and published by . This book was released on 1997 with total page 2984 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Cell Cell Channels written by František Baluška and published by Springer Science & Business Media. This book was released on 2007-08-10 with total page 331 pages. Available in PDF, EPUB and Kindle. Book excerpt: he biological sciences are dominated by the idea that cells are the functionally autonomous, physically separated, discrete units of life. TThis concept was propounded in the 19th century by discoveries of the cellular structuring of both plants and animals. Moreover, the ap parent autonomy of unicellular eukaryotes, as well as the cellular basis of the mammalian brain (an organ whose anatomy for a long while defied attempts to validate the idea of the cellular nature of its neurons), seemed to provide the final conclusive evidence for the completeness of *cell theory', a theory which has persisted in an almost dogmatic form up to the present day. However, it is very obvious that there are numerous observations which indicate that it is not the cells which serve as the basic units of biological life but that this property falls to some other, subcellular assemblage. To deal with this intricate problem concerning the fundamental unit of living matter, we proposed the so-called Cell Body concept which, in fact, devel ops an exceedingly original idea proposed by Julius Sachs at the end of the 19th century. In the case of eukaryotic cells, DNA-enriched nuclei are intimately associated with a microtubular cytoskeleton. In this configuration—as a Cell Body—these two items comprise the fundamental functional and struc tural unit of eukaryotic living matter. The Cell Body seems to be inherent to all cells in all organisms.

Download or read book Fields Virology written by David Mahan Knipe and published by Lippincott Williams & Wilkins. This book was released on 2007 with total page 3116 pages. Available in PDF, EPUB and Kindle. Book excerpt: Accompanying CD-ROM has same title as book.

Download or read book Plant Microbe Insect Interactions in Ecosystem Management and Agricultural Praxis written by Gero Benckiser and published by Frontiers Media SA. This book was released on 2019-04-03 with total page 531 pages. Available in PDF, EPUB and Kindle. Book excerpt: Nature’s high biomass productivity is based on biological N2 fixation (BNF) and biodiversity (Benckiser, 1997; Benckiser and Schnell, 2007). Although N2 makes up almost 80% of the atmosphere’s volume living organisms need it in only small quantities, presumably due to the paucity of natural ways of transforming this recalcitrant dinitrogen into reactive compounds. N shortage is commonly the most important limiting factor in crop production. The synthesis of ammonium from nitrogen and hydrogen, the Haber–Bosch (H-B) process, invented more than 100 years ago, became the holy grail of synthetic inorganic chemistry and removed the most ubiquitous limit on crop yields. H-B opened the way for the development and adoption of high-yielding cultivars, for monoculturing by organic and precision farming. With N over fertilization and pesticide application monoculturing farmers could approach Nature’s high biomass productivity by causing side effects the scientific world is investigating. This eBook presents the complexity the scientific world is facing in in understanding the soil-microbe-plant-animal cooperation, the millions of taxonomically, phylogenetically, and metabolically diverse above-below-ground species, involved in shaping the ever-changing biogeochemical process patterns being of great significance for food production networks and yield stability. Because ecosystem management and agricultural praxis are still largely conducted in isolation, the aim of this Frontiers’ eBook is to gather and interconnect plant-microbe-insect interaction research of various disciplines, studied with a broad spectrum of modern physical-chemical, biochemical, and molecular biological, agronomical techniques. The goal of this Research Topic was to gain a better understanding of microbe-plant-insect compositions, functioning, interactions, health, fitness, and productivity.

Download or read book Plant Virology written by Roger Hull and published by Academic Press. This book was released on 2013-10-31 with total page 1119 pages. Available in PDF, EPUB and Kindle. Book excerpt: The seminal text Plant Virology is now in its fifth edition. It has been 10 years since the publication of the fourth edition, during which there has been an explosion of conceptual and factual advances. The fifth edition of Plant Virology updates and revises many details of the previous edition while retaining the important earlier results that constitute the field's conceptual foundation. Revamped art, along with fully updated references and increased focus on molecular biology, transgenic resistance, aphid transmission, and new, cutting-edge topics, bring the volume up to date and maintain its value as an essential reference for researchers and students in the field. Thumbnail sketches of each genera and family groups Genome maps of all genera for which they are known Genetic engineered resistance strategies for virus disease control Latest understanding of virus interactions with plants, including gene silencing Interactions between viruses and insect, fungal, and nematode vectors Contains over 300 full-color illustrations

Download or read book Pesticides Documentation Bulletin written by and published by . This book was released on 1969 with total page 844 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Arabidopsis written by Detlef Weigel and published by CSHL Press. This book was released on 2002 with total page 370 pages. Available in PDF, EPUB and Kindle. Book excerpt: The thale cress Arabidopsis thaliana is increasingly popular among plant scientists: it is small, easy to grow, and makes flowers, and the sequence of its small and simple genome was recently completed. This is the most complete and authoritative laboratory manual to be published on this model organism and the first to deal with genomic and proteomic approaches to its biology.