Download or read book High Molecular Weight HMW Dissolved Organic Matter DOM in Seawater written by Lihini I. Aluwihare and published by . This book was released on 1999 with total page 436 pages. Available in PDF, EPUB and Kindle. Book excerpt: The goal of this thesis was to use high resolution analytical techniques coupled with molecular level analyses to chemically characterize high molecular weight (> 1 k Da (HMW)) dissolved organic matter (DOM) isolated from seawater in an attempt to provide new insights in to the cycling of DOM in the ocean. While a variety of sites spanning different environments (fluvial, coastal and oceanic) and ocean basins were examined, the chemical structure of the isolated HMW DOM varied little at both the polymer and monomer levels. All samples show similar ratios of carbohydrate:acetate:lipid carbon (80±4:10±2:9±4) indicating that these biochemicals are present within a family of related polymers. The carbohydrate fraction shows a characteristic distribution of seven major neutral monosaccharides: rhamnose, fucose, arabinose, xylose, mannose, glucose and galactose; and additionally contains Nacetylated amino sugars as seen by Nuclear Magnetic Resonance Spectroscopy (NMR). This family of compounds, consisting of a specifically linked polysaccharide backbone that is acylated at several positions, has been termed acylated polysaccharides (APS) by our laboratory. APS accounts for 50% of the carbon in HMW DOM isolated from the surface ocean and 20% of the carbon in HMW DOM isolated from the deep ocean. In order to identify a possible source for APS three species of phytoplankton, Thalassiossira weissflogii, Emiliania huxleyi and Phaeocystis, were cultured in seawater and their HMW DOM exudates examined by variety of analytical techniques. Both the T. weissflogii and E. huxleyi exudates contain compounds that resemble APS indicating that phytoplankton are indeed a source of APS to the marine environment. Furthermore, the degradation of the T. weissflogii exudate by a natural assemblage of microorganisms indicates that the component resembling APS is more resistant to microbial degradation compared to other polysaccharides present in the culture. Molecular level analyses show the distribution of monosaccharides to be conservative in surface and deep waters suggesting that APS is present throughout the water column. In order to determine the mechanism by which APS is delivered to the deep ocean the [delta]14C value of APS in the deep ocean was compared to the A14C value of the dissolved inorganic carbon (DIC) at the same depth. If the formation of deep water is the dominant mode of transport then both the DIC and APS will have similar [delta]14C values. However, if APS is injected into the deep ocean from particles or marine snow then the [delta]14C value of APS will be higher than the DIC at the same depth. Our results indicate that APS in the deep Pacific Ocean carries a modem [delta]14C value and is substantially enriched in 14C relative to the total HMW DOM and the DIC at that depth. Thus, particle dissolution appears to be the most important pathway for the delivery of APS to the deep ocean.

Download or read book Microbial Cycling of Marine High Molecular Weight Dissolved Organic Matter written by Oscar Abraham Sosa and published by . This book was released on 2016 with total page 246 pages. Available in PDF, EPUB and Kindle. Book excerpt: Microorganisms play a central role mediating biogeochemical cycles in the ocean. Marine dissolved organic matter (DOM) – a reservoir of organic solutes and colloids derived from plankton is a major source of carbon, nutrients, and energy to microbial communities. The biological transformation and remineralization of DOM sustains marine productivity by linking the microbial food web to higher trophic levels (the microbial loop) and exerts important controls over the cycles of carbon and bioessential elements, such as nitrogen and phosphorus, in the sea. Yet insight into the underlying metabolism and reactions driving the degradation of DOM is limited partly because its exact molecular composition is difficult to constrain and appropriate microbial model systems known to decompose marine DOM are lacking. This thesis identifies marine microorganisms that can serve as model systems to study the metabolic pathways and biochemical reactions that control an important ecosystem function, DOM turnover. To accomplish this goal, bacterial isolates were obtained by enriching seawater in dilution-to-extinction culturing experiments with a natural source of DOM, specifically, the high molecular weight (HMW) fraction (>1 kDa nominal molecular weight) obtained by ultrafiltration. Because it is relatively easy to concentrate and it is fairly uniform in its chemical composition across the global ocean and other aquatic environments, HMW DOM has the potential to serve as a model growth substrate to study the biological breakdown of DOM. The phylogeny, genomes, and growth characteristics of the organisms identified through this work indicate that HMW DOM contains bioavailable substrates that may support widespread microbial populations in coastal and open-ocean environments. The availability of ecologically relevant isolates in culture can now serve to test hypothesis emerging from cultivation-independent studies pertaining the potential role of microbial groups in the decomposition of organic matter in the sea. Detailed studies of the biochemical changes exerted on DOM by selected bacterial strains will provide new insight into the processes driving the aerobic microbial food chain in the upper ocean.

Download or read book Dissolved Organic Matter in Lacustrine Ecosystems written by K. Salonen and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 292 pages. Available in PDF, EPUB and Kindle. Book excerpt: Concentrations of dissolved organic matter (DOM) in lakes are often an order of magnitude greater than concentrations of particulate organic matter; nevertheless, the biogeochemical analysis of DOM is described in only a few textbooks on limnology (most thoroughly by Wetzel). The orgins of dissolved organic substances are largely photosynthetic; DOM is either autochthonously synthesized by littoral and pelagic flora through secretions and autolysis of cellular contents, or allochthonously generated in terrestrial systems of the drainage basin, composing largely of humic substances refractory to rapid microbial degradation. The role of DOM in lacustrine ecosystems, as energy source and system regulator, however, is still poorly known. The aim of this book is: (1) to present state-of-the-art reviews of the role of dissolved autochthonous and allochthonous organic matter in pelagial and littoral zones; and (2) to focus attention on poorly understood but critical topics and hence to provide direction for future research activity.

Download or read book Major biochemical composition of dissolved high molecular weight organic matter in seawater written by Matthew Duffield McCarthy and published by . This book was released on 1998 with total page 242 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Linking Optical and Chemical Properties of Dissolved Organic Matter in Natural Waters written by Christopher L. Osburn and published by Frontiers Media SA. This book was released on 2017-01-17 with total page 244 pages. Available in PDF, EPUB and Kindle. Book excerpt: A substantial increase in the number of studies using the optical properties (absorbance and fluorescence) of dissolved organic matter (DOM) as a proxy for its chemical properties in estuaries and the coastal and open ocean has occurred during the last decade. We are making progress on finding the actual chemical compounds or phenomena responsible for DOM’s optical properties. Ultrahigh resolution mass spectrometry, in particular, has made important progress in making the key connections between optics and chemistry. But serious questions remain and the last major special issue on DOM optics and chemistry occurred nearly 10 years ago. Controversies remain from the non-specific optical properties of DOM that are not linked to discrete sources, and sometimes provide conflicting information. The use of optics, which is relatively easier to employ in synoptic and high resolution sampling to determine chemistry, is a critical connection to make and can lead to major advances in our understanding of organic matter cycling in all aquatic ecosystems. The contentions and controversies raised by our poor understanding of the linkages between optics and chemistry of DOM are bottlenecks that need to be addressed and overcome.

Download or read book Characterization of High Molecular Weight Dissolved Organic Matter in Estuaries written by Julie Callahan and published by . This book was released on 2004 with total page 252 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book New Radiocarbon and Size franctionation Approaches for Examining Organic Matter Source and Reactivity in the Sea written by Brett D. Walker and published by . This book was released on 2011 with total page 416 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Biogeochemistry of Marine Dissolved Organic Matter written by Dennis A. Hansell and published by Academic Press. This book was released on 2014-10-02 with total page 712 pages. Available in PDF, EPUB and Kindle. Book excerpt: Marine dissolved organic matter (DOM) is a complex mixture of molecules found throughout the world's oceans. It plays a key role in the export, distribution, and sequestration of carbon in the oceanic water column, posited to be a source of atmospheric climate regulation. Biogeochemistry of Marine Dissolved Organic Matter, Second Edition, focuses on the chemical constituents of DOM and its biogeochemical, biological, and ecological significance in the global ocean, and provides a single, unique source for the references, information, and informed judgments of the community of marine biogeochemists. Presented by some of the world's leading scientists, this revised edition reports on the major advances in this area and includes new chapters covering the role of DOM in ancient ocean carbon cycles, the long term stability of marine DOM, the biophysical dynamics of DOM, fluvial DOM qualities and fate, and the Mediterranean Sea. Biogeochemistry of Marine Dissolved Organic Matter, Second Edition, is an extremely useful resource that helps people interested in the largest pool of active carbon on the planet (DOC) get a firm grounding on the general paradigms and many of the relevant references on this topic. Features up-to-date knowledge of DOM, including five new chapters The only published work to synthesize recent research on dissolved organic carbon in the Mediterranean Sea Includes chapters that address inputs from freshwater terrestrial DOM

Download or read book Chemical Controls on the Cycling and Reactivity of Marine Dissolved Organic Matter written by Benjamin Nash Granzow and published by . This book was released on 2023 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Marine dissolved organic matter (DOM) is an actively cycling reservoir of carbon containing thousands of unique compounds. To describe the complex dynamics that govern the biological transformation and decomposition of compounds in this molecular black box, models of DOM reactivity use chemical characteristics, as well as environmental parameters, to describe trends in the turnover time of classes of DOM. In this thesis, I describe two projects that examine hypotheses regarding the turnover of two classes of DOM. In the 1st project, I test the assumption made by the size-reactivity continuum hypothesis that high molecular weight (> 1 kDa) DOM (HMWDOM) represents a diagenetic intermediate between large labile material and small recalcitrant compounds. Size-fractions of HMWDOM were collected using size-exclusion chromatography, and the changes in MW and chemical composition of the fractions were studied using diffusion-ordered spectroscopy. The size fraction carbon isotopic values were correlated with the proportion of humic substances in the fractions. Through linear modeling, the apparent radiocarbon ages of the two major components of HMWDOM were determined to be 1-3 yrs and 2-4 kyrs, respectively. Combined with the measurements of MW distribution this work demonstrates that HMWDOM is composed of two components that have contrasting decomposition pathways in the ocean. HMWDOM cannot be treated as a single DOM pool when incorporated into models of DOM diagenesis. The 2nd project in this dissertation examines the remineralization of phosphonates, compounds with a direct C-P bond, in the lower euphotic zone using a newly developed fluorescent assay, which measures the activity of carbon-phosphorus lyase. C-P lyase activity (CLA) profiles from the North Pacific Subtropical Gyre (NPSG) showed a sharp activity maximum near the deep-chlorophyll maximum (DCM). High-resolution nutrient measurements suggest that this subsurface CLA maximum is the result of a high nitrate flux at the top of the nitracline. The composition of particulate-P through the euphotic zone was also examined. While phosphonates were not detected in suspended particles, a significant amount of aminoethylphosphonate was measured in sinking material, suggesting eukaryotic material may be an important source of phosphonates to the ocean.

Download or read book Manual of Environmental Microbiology written by Cindy H. Nakatsu and published by John Wiley & Sons. This book was released on 2020-08-11 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: The single most comprehensive resource for environmental microbiology Environmental microbiology, the study of the roles that microbes play in all planetary environments, is one of the most important areas of scientific research. The Manual of Environmental Microbiology, Fourth Edition, provides comprehensive coverage of this critical and growing field. Thoroughly updated and revised, the Manual is the definitive reference for information on microbes in air, water, and soil and their impact on human health and welfare. Written in accessible, clear prose, the manual covers four broad areas: general methodologies, environmental public health microbiology, microbial ecology, and biodegradation and biotransformation. This wealth of information is divided into 18 sections each containing chapters written by acknowledged topical experts from the international community. Specifically, this new edition of the Manual Contains completely new sections covering microbial risk assessment, quality control, and microbial source tracking Incorporates a summary of the latest methodologies used to study microorganisms in various environments Synthesizes the latest information on the assessment of microbial presence and microbial activity in natural and artificial environments The Manual of Environmental Microbiology is an essential reference for environmental microbiologists, microbial ecologists, and environmental engineers, as well as those interested in human diseases, water and wastewater treatment, and biotechnology.

Download or read book Aquatic Organic Matter Fluorescence written by Paula G. Coble and published by Cambridge University Press. This book was released on 2014-07-14 with total page 407 pages. Available in PDF, EPUB and Kindle. Book excerpt: A core text on principles, laboratory/field methodologies, and data interpretation for fluorescence applications in aquatic science, for advanced students and researchers.

Download or read book Biogeochemistry of Marine Dissolved Organic Matter written by Dennis A. Hansell and published by Elsevier. This book was released on 2024-07-04 with total page 870 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biogeochemistry of Marine Dissolved Organic Matter, 3rd edition is the most up-to-date revision of the fundamental reference for the biogeochemistry of marine dissolved organic matter. Since its original publication in June 2002, the science, questions, and priorities have advanced, and the editors of this essential guide, have added nine new chapters, including one on the South China Sea. An indispensable manual edited by the most distinguished experts in the field, this book is addressed to graduate students, marine scientists, and all professionals interested in advancing their knowledge of the field. Features up-to-date knowledge on DOM, including 9 new chapters Presents the only published work to synthesize recent research on dissolved organic carbon in the South China, a region receiving a great deal of attention in recent decades Offers contributions by world-class research leaders

Download or read book Cycling of high molecular weight dissolved organic matter in the Middle Atlantic Bight as revealed by carbon isotopic 13C and 14C signatures written by L. Guo and published by . This book was released on 1996 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book The Influence of Dissolved Organic Matter Composition on Its Reactivity in Natural and Engineered Systems written by Reid Milstead and published by . This book was released on 2023 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Dissolved organic matter (DOM) is a complex heterogeneous mixture of organic compounds that is found in all water systems. DOM is derived from both terrestrial and microbial sources. The composition of DOM can vary greatly depending on a number of variables, including time of year, surrounding groundcover type, and water column depth. The characterization of DOM composition is increasingly performed using high-resolution mass spectrometry, although different instrumentation and techniques may yield different results. Importantly, DOM plays a key role in a number of chemical processes in both natural and engineered systems, such as the generation of carbon dioxide (CO2) from surface waters, the degradation of aquatic contaminants, and the formation of disinfection byproducts (DBPs) during drinking water treatment. The composition of DOM determines its reactivity in all of these processes. Using both bulk and high-resolution analytical techniques, the photooxidation of DOM can be explored. DOM compounds that are more oxidized and aromatic tend to be associated with the consumption of oxygen and the production of CO2. Bulk scale measurements show that DOM becomes less aromatic and lower in molecular weight as a result of partial photooxidation. High-resolution mass spectrometry also provides evidence of oxygen addition and the loss of CO2 from DOM during irradiation experiments. However, the chemical formulas that are most photolabile vary depending on the initial composition of DOM. Using light exposure experiments the kinetics of degradation of four contaminants were quantified for a large set of diverse waters. Using this information, we evaluated the relationships between indirect photolysis rate constants and the formation of photochemically produced reactive intermediates (PPRI) using linear regression analysis. Additionally, quencher experiments were performed to identify the PPRI associated with the degradation of each contaminant in all waters. Triplet state DOM (3DOM) and singlet oxygen (1O2) were identified as critical for atorvastatin, carbamazepine, and sulfadiazine, while hydroxyl radical (•OH) is important for benzotriazole. Our results suggest that quenching experiments should be used with caution due to the non-targeted nature of quenching compounds and the interconnection of PPRI. All of these factors result in probe compounds possibly overstating the importance of PPRI in the indirect photolysis of common contaminants. The characterization of DOM in drinking waters reveals a high degree of variability in DOM composition and reactivity with chlorine, particularly in groundwater samples. Despite the variability in DOM composition, novel DBPs with up to three halogen substituents are compositionally similar among all waters. These novel DBPs are positively correlated with trihalomethane and, to a lesser extent, the formation of haloacetonitriles. This suggests that some low molecular weight DBPs and novel DBPs detected via high-resolution mass spectrometry share similar aromatic precursors, providing evidence that low molecular weight DBPs are useful proxies for the formation of unknown, unidentified high molecular weight DBPs. Compared to Fourier transform-ion cyclotron resonance mass spectrometry (FT-ICR MS), Orbitrap MS yields significantly fewer formula matches and appears to have a bias towards sulfur-containing formulas and against nitrogen-containing formulas. Additionally, the choice of calibration method is particularly important for the less powerful Orbitrap MS. The matched formulas yielded from Orbitrap MS tend to be more oxidized and less highly saturated than those yielded by FT-ICR MS. Despite these differences, the formulas produced by both instruments tend to yield similar relative differences between samples, suggesting that Orbitrap MS is an acceptable replacement for FT-ICR MS in some cases.

Download or read book Spectral Shape as an Indicator of Molecular Weight in Chromophoric Dissolved Organic Matter written by John Robert Helms and published by . This book was released on 2006 with total page 78 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Active Oxygen in Chemistry written by Christopher S. Foote and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 355 pages. Available in PDF, EPUB and Kindle. Book excerpt: Taking an interdisciplinary approach, this book and its counterpart, Active Oxygen in Biochemistry, explore the active research area of the chemistry and biochemistry of oxygen. Complementary but independent, the two volumes integrate subject areas including medicine, biology, chemistry, engineering, and environmental studies.

Download or read book Molecular Characterization of Dissolved Organic Matter DOM in Seawater written by Jasper Daniel Hendrik van Heemst and published by . This book was released on 2000 with total page 178 pages. Available in PDF, EPUB and Kindle. Book excerpt: