Download or read book Global DNA Methylation Changes in Soybean as a Response to Soybean Cyst Nematode SCN Infection written by Aditi Rambani and published by . This book was released on 2018 with total page 182 pages. Available in PDF, EPUB and Kindle. Book excerpt: Soybean cyst nematode (SCN, Heterodera glycines) is the most damaging pest in soybean production worldwide. The compatible interaction of SCN with susceptible soybean plants is mediated by differential expression of thousands of genes in the infected root cells, leading to the formation of a functional feeding site, the syncytium. During an incompatible interaction of SCN with resistant soybean, the developing syncytium degenerates leading to nematode death. The resistance to SCN in soybean is derived from two major loci, Rhg1 and Rhg4. In this study, the role of genome-wide DNA methylation in regulating gene expression during the compatible interaction was examined using susceptible soybean cultivar 'Williams 82'. The analysis revealed that SCN induces both hyper- and hypomethylation in thousands of genomic regions overlapping with genes. The level and pattern of DNA methylation in various genic regions were found to impact gene transcription. A significant number of the differentially methylated genes was found to overlap with genes known to be significantly differentially expressed in syncytium, providing the first experimental evidence that syncytium transcriptome is epigentically controlled. In addition, the levels and patterns of DNA methylation were compared between the compatible and incompatible interactions using a pair of near-isogenic lines differing in Rhg4 allele. The methylomes of two near isogenic lines, susceptible (TN09-16) and the resistant (TN09-29) were substantially different both under SCN-infected and non-infected conditions. Stably heritable as well as novel non-parental differentially methylated regions in genes with functions related to SCN parasitism of soybean were discovered. Furthermore, differential DNA methylation in microRNA genes was also examined in the susceptible and resistant lines in response to SCN infection. A number of differentially methylated microRNAs were identified specifically in the susceptible lines, Williams 82 and TN09-16, indicating that various components of epigenetic mechanisms are mutually linked. Taken together, profiling DNA methylation at single nucleotide resolution during the susceptible and resistant interactions provided unprecedented insights into the role of this epigenetic mark in determining the compatibility of the interaction between soybean and SCN by impacting the expression of protein-coding and microRNA genes as well as transposable elements located nearby genes.

Download or read book Characterizing Rhg1 Mediated Soybean Resistance to Soybean Cyst Nematode Using Functional and Computational Approaches written by and published by . This book was released on 2013 with total page 183 pages. Available in PDF, EPUB and Kindle. Book excerpt: Domesticated soybean, Glycine max, is an important world commodity accounting for 68% of world protein meal and 56% of world oilseed production. Soybean cyst nematode (SCN, Heterodera glycines) causes billions of dollars of economic losses annually and is considered the most economically damaging soybean disease. A previously identified locus, termed Rhg1, has a significant impact on SCN resistance, and is currently deployed in most commercially utilized SCN resistant soybean cultivars. The mechanism underlying Rhg1-mediated SCN resistance has remained elusive. This dissertation focuses on functional and computational approaches to define and characterize the genes underlying Rhg1-mediated SCN resistance. We identified three tightly clustered genes at the Rhg1 locus that each contributes to SCN resistance. We further discovered that the DNA encoding these genes is present in multiple copies in SCN-resistant parents, and this causes elevated expression of the genes. Two of the identified genes, Glyma18g02580 and Glyma18g02610, did not carry amino acid polymorphisms between resistant and susceptible Rhg1 haplotypes. The third gene, Glyma18g02590, encoding a predicted &alpha-SNAP protein did contain amino acid polymorphisms relative to the reference soybean genome Williams 82, which is SCN-susceptible. Transgenic expression of any one of these three genes in soybean roots did not discernibly improve resistance, but simultaneous expression of all three genes did enhance SCN resistance. To further explore the evolution and diversity of Rhg1, we used whole genome sequencing, fiber-FISH and related techniques to examine the structural and nucleic acid variation in the genomes of four-dozen soybean accessions. We discovered that the Rhg1 locus is commonly arranged in a single copy in all tested SCN susceptible germplasm, but is present as either a low-copy or high-copy type in SCN-resistant germplasm. These repeat copy classes are also distinguishable by expression level differences, and the presence of related but distinct alleles of the previously identified &alpha-SNAP protein. We also identified differential DNA-methylation at the locus between SCN-resistance and susceptible lines. The identification of the genes that control Rhg1-mediated resistance, and an understanding of their evolution and diversity, should foster efforts to improve the disease resistance that is available to reduce the deleterious impacts of SCN.

Download or read book Biology and Management of the Soybean Cyst Nematode written by Robert D. Riggs and published by American Phytopathological Society. This book was released on 1992 with total page 200 pages. Available in PDF, EPUB and Kindle. Book excerpt: 1 History, distribution, and economics. 2 Systematics and morphology. 3 Epiphytology and life cycle. 4 Cellular responses to infection. 5 Population dynamics. 6 Genetics. 7 The race concept. 8 Nematode race identification, A look to the future. 9 Interactions with other organisms. 10 Host range. 11 Chemical control. 12 Management by cultural practices. 13 Biological control. 14 Breeding for resistance to soybean cyst nematode. 15 Cytopathological reactions of resistant soybean plants to nematode invasion. 16 Tolerance in soybean.

Download or read book Plant Microbe Interaction Recent Advances in Molecular and Biochemical Approaches written by Prashant Swapnil and published by Academic Press. This book was released on 2023-04-17 with total page 450 pages. Available in PDF, EPUB and Kindle. Book excerpt: Plant-Microbe Interaction - Recent Advances in Molecular and Biochemical Approaches: Agricultural Aspects of Microbiome Leading to Plant Defence, Volume Two continues the work of Volume One, covering the role of these plant microbes and their interaction between plants and microbes. These beneficial microbes, such as bacteria and fungi are also known as plant growth-promoting rhizobacteria (PGPR) through a biochemical reaction that may improve induced systemic resistance in the plant host via indirectly (against phytopathogens) or directly (the solubilization of mineral nutrients) by producing phytohormones and specific enzymes such as 1-aminocyclopropane-1-carboxylate deaminase. The book covers biochemical processes such as physiological, metabolic, etc. of plant and microbe interactions, the biochemistry of biological systems, the interaction of biological systems above-ground or within the rhizosphere, and the history of growth promoting microbiomes, their roles in phytoremediation efficiency, physiological and biochemical studies, chemical communication and signaling mechanisms. Covers agricultural aspects in which the biochemistry in between plants and microbes helps us understand interactions in the rhizosphere Helps readers understand the molecular and biochemical approaches of plant-microbe interactions Enables an understanding of plant microbe interactions which will help to improve crop production

Download or read book Plant Nematode Interactions written by and published by Academic Press. This book was released on 2015-03-26 with total page 461 pages. Available in PDF, EPUB and Kindle. Book excerpt: Advances in Botanical Research publishes in-depth and up-to-date reviews on a wide range of topics in plant sciences. Currently in its 73rd volume, the series features several reviews by recognized experts on all aspects of plant genetics, biochemistry, cell biology, molecular biology, physiology and ecology. This thematic volume features reviews on molecular and developmental aspects of the compatible plant-nematode interaction. The contributors all actively work in the field of molecular genetics and genomics of plant parasitic nematodes and nematode feeding sites. Reviews focus on molecular and physiological aspects of nematode feeding site development and includes specific chapters on nematode effectors as well as plant responses. Publishes in-depth and up-to-date reviews on a wide range of topics in plant sciences This volume features reviews of the fast moving field of compatible interaction between plants and sedentary endo-parasitic nematodes A strong focus on molecular and physiological aspects of nematode feeding site development and includes specific chapters on nematode effectors as well as plant responses

Download or read book The Soybean Genome written by Henry T. Nguyen and published by Springer. This book was released on 2017-09-20 with total page 216 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book examines the application of soybean genome sequences to comparative, structural, and functional genomics. Since the availability of the soybean genome sequence has revolutionized molecular research on this important crop species, the book also describes how the genome sequence has shaped research on transposon biology and applications for gene identification, tilling and positional gene cloning. Further, the book shows how the genome sequence influences research in the areas of genetic mapping, marker development, and genome-wide association mapping for identifying important trait genes and soybean breeding. In closing, the economic and botanical aspects of the soybean are also addressed.

Download or read book Wildlife Disease Ecology written by Kenneth Wilson and published by Cambridge University Press. This book was released on 2019-11-14 with total page 693 pages. Available in PDF, EPUB and Kindle. Book excerpt: Introduces readers to key case studies that illustrate how theory and data can be integrated to understand wildlife disease ecology.

Download or read book Legume Nitrogen Fixation in Soils with Low Phosphorus Availability written by Saad Sulieman and published by Springer. This book was released on 2017-06-10 with total page 292 pages. Available in PDF, EPUB and Kindle. Book excerpt: This thoughtful and provocative book provides a concise, up-to-date presentation of how current and projected future phosphorus scarcity will affect legume growth and their symbiotic nitrogen-fixing capabilities. It is a timely examination of the physiological and molecular responses of nodules to phosphorous deficiency in attempt to identify common principles. Students and researchers in the many disciplines related to crop productivity will find this title an exciting contribution in the area of plant stress physiology. The knowledge in this volume can also aid plant breeders, particularly through new methods of genetic engineering, in developing unique and adaptive cultivars with higher symbiotic efficiency. The awareness of the rapidly rising world population must translate into a parallel increase in agricultural production in order to sustain the growing population both now and in the future. Hence, the demand for food crops to produce proteins and vegetable oil for human consumption is going to increase considerably during the coming years. The essential role of legumes in agriculture is well-recognized, given the abundant levels of proteins and oils found in plants along with their enormous contribution to the sustainability of agricultural systems and human health. The capacity of legumes to fix nitrogen (N2) in partnership with rhizobia provides an input-saving and resource-conserving alternative, thereby reducing the need for chemical fertilizers while enhancing overall crop productivity. The use of N2-fixing legumes to produce plant proteins results in a substantial decrease in the consumption of fossil fuels and therefore also in the agricultural effects to global warming. However, a major constraint to legume production is low soil phosphorus (P) availability, considering that an overwhelming majority of the world’s soils are classified as P-deficient. Low-P availability is especially problematic for legumes, since legume nodules responsible for N2 fixation have a high P requirement. Therefore, this book explains how nodule N2 fixation responds to low P availability, which is crucial for improving legume production and maintaining agricultural sustainability in the context of the global P crisis.

Download or read book Advances in Plant Breeding Strategies Legumes written by Jameel M. Al-Khayri and published by Springer Nature. This book was released on 2019-10-08 with total page 522 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book examines the development of innovative modern methodologies towards augmenting conventional plant breeding, in individual crops, for the production of new crop varieties under the increasingly limiting environmental and cultivation factors to achieve sustainable agricultural production, enhanced food security, in addition to providing raw materials for innovative industrial products and pharmaceuticals. This is Vol 7, subtitled Legumes, focuses on advances in breeding strategies using both traditional and modern approaches for the improvement of individual legume crops. Included in this volume are Adzuki bean, Black gram, Chickpea Cluster bean, Common bean, Cowpea, Faba bean, Hyacinth bean, Lentil, Mung bean, Pigeonpea and Soybean. This volume is contributed by 57 internationally reputable scientists from 9 countries. Each chapter comprehensively reviews the modern literature on the subject and reflects the authors own experience.

Download or read book The Potato Crop written by Hugo Campos and published by Springer Nature. This book was released on 2019-12-03 with total page 524 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is open access under a CC BY 4.0 license. This book provides a fresh, updated and science-based perspective on the current status and prospects of the diverse array of topics related to the potato, and was written by distinguished scientists with hands-on global experience in research aspects related to potato. The potato is the third most important global food crop in terms of consumption. Being the only vegetatively propagated species among the world’s main five staple crops creates both issues and opportunities for the potato: on the one hand, this constrains the speed of its geographic expansion and its options for international commercialization and distribution when compared with commodity crops such as maize, wheat or rice. On the other, it provides an effective insulation against speculation and unforeseen spikes in commodity prices, since the potato does not represent a good traded on global markets. These two factors highlight the underappreciated and underrated role of the potato as a dependable nutrition security crop, one that can mitigate turmoil in world food supply and demand and political instability in some developing countries. Increasingly, the global role of the potato has expanded from a profitable crop in developing countries to a crop providing income and nutrition security in developing ones. This book will appeal to academics and students of crop sciences, but also policy makers and other stakeholders involved in the potato and its contribution to humankind’s food security.

Download or read book Interactions in the Root Environment An Integrated Approach written by David S. Powlson and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 223 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume contains a selection of papers presented at the Rothamsted Millennium Conference "Interactions in the Root Environment - an Integrated Approach". The meeting brought together scientists from a range of disciplines interested in the relationship between soil biology and plant growth, reflected by the contents of the volume. Topics range from root development and nutrient flow, plant-microbe and plant-plant signaling, methods for studying bacterial and fungal diversity, to the exploitation of rhizosphere interactions for biological control of diseases and soil remediation. Authors include many internationally-recognized experts in their field and the contributions range from reviews to research papers. The volume presents a timely and wide-ranging overview of the interactions between plants, microbes and soil. It should prove an indispensable resource for students and others seeking an introduction to the topic, in addition to scientists already conversant with the area of research.

Download or read book Soybean Breeding written by Felipe Lopes da Silva and published by Springer. This book was released on 2017-06-10 with total page 439 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book was written by soybean experts to cluster in a single publication the most relevant and modern topics in soybean breeding. It is geared mainly to students and soybean breeders around the world. It is unique since it presents the challenges and opportunities faced by soybean breeders outside the temperate world.

Download or read book Impact of Arbuscular Mycorrhizas on Sustainable Agriculture and Natural Ecosystems written by Silvio Gianiazzi and published by Birkhäuser. This book was released on 2012-12-06 with total page 230 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book, prepared by participants of the European network COST ACTION 810 (1989-93) is the outcome of a meeting held in Switzerland (Einsiedeln, September 29 to October 2, 1993) on the "Impact of arbuscular mycorrhizas on sustainable agriculture and natural ecosystems". COST(Cooperation Scientifique et Technique) Networks were created in 1971 by the Commission of European Communities, and later enlarged to include non-European Member States, to promote pre-competitive scientific and technical research in fields of common interest. During the eighties, COST ACTIONS were launched in bio technological fields, including the network on arbuscular mycorrhizas. Arbuscular mycorrhizas are a universally found symbiosis between plants and certain soil fungi and essential components of soil-plant systems. They act as a major inter face by influencing or regulating resource allocation between abiotic and biotic components of the soil-plant system. Arbuscular mycorrhizas are involved in many key ecosystem processes including nutrient cycling and conservation of soil struc ture, and have been shown to improve plant health through increased protection against abiotic and biotic stresses. Sustainability can be defined as the successful management of resources to satisfy changing human needs while maintaining or enhancing the quality of the environ ment and conserving resources. Increasing environmental degradation and instability, due to anthropogenic activities and in particular the increasing fragility of the soil resource, has led to an increased awareness of the need to develop practices resulting in more sustainable natural and agroecosystems.

Download or read book Genomics and Breeding for Climate Resilient Crops written by Chittaranjan Kole and published by Springer Science & Business Media. This book was released on 2013-06-18 with total page 556 pages. Available in PDF, EPUB and Kindle. Book excerpt: Climate change is expected to have a drastic impact on agronomic conditions including temperature, precipitation, soil nutrients, and the incidence of disease pests, to name a few. To face this looming threat, significant progress in developing new breeding strategies has been made over the last few decades. The first volume of Genomics and Breeding for Climate-Resilient Crops presents the basic concepts and strategies for developing climate-resilient crop varieties. Topics covered include: conservation, evaluation and utilization of biodiversity; identification of traits, genes and crops of the future; genomic and molecular tools; genetic engineering; participatory and evolutionary breeding; bioinformatics tools to support breeding; funding and networking support; and intellectual property, regulatory issues, social and political dimensions. ​

Download or read book Marker assisted Selection written by Food and Agriculture Organization of the United Nations and published by Food & Agriculture Org.. This book was released on 2007 with total page 498 pages. Available in PDF, EPUB and Kindle. Book excerpt: A comprehensive description and assessment of the use of marker-assisted selection for increasing the rate of genetic gain in crops, livestock, forestry and fish, including the related policy, FAO's tradition of dealing with issues of importance to agricultural and economic development in a multidisciplinary and cross-sectoral manner.

Download or read book Industrial Pharmaceutical Biotechnology written by Heinrich Klefenz and published by Wiley-VCH. This book was released on 2002-04-22 with total page 328 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume focuses on pharmaceutical biotechnology as a key area of life sciences. The complete range of concepts, processes and technologies of biotechnology is applied in modern industrial pharmaceutical research, development and production. The results of genome sequencing and studies of biological-genetic function are combined with chemical, micro-electronic and microsystem technology to produce medical devices and diagnostic biochips. A multitude of biologically active molecules is expanded by additional novel structures created with newly arranged gene clusters and bio-catalytic chemical processes. New organisational structures in the co-operation of institutes, companies and networks enable faster knowledge and product development and immediate application of the results of research and process development. This book is the ideal source of information for scientists and engineers in research and development, for decision-makers in biotech, pharma and chemical corporations, as well as for research institutes, but also for founders of biotech companies and people working for venture capital corporations.

Download or read book Plant Proteomics written by Jozef Samaj and published by Springer Science & Business Media. This book was released on 2007-09-09 with total page 397 pages. Available in PDF, EPUB and Kindle. Book excerpt: Plant Proteomics highlights rapid progress in this field, with emphasis on recent work in model plant species, sub-cellular organelles, and specific aspects of the plant life cycle such as signaling, reproduction and stress physiology. Several chapters present a detailed look at diverse integrated approaches, including advanced proteomic techniques combined with functional genomics, bioinformatics, metabolomics and molecular cell biology, making this book a valuable resource for a broad spectrum of readers.