Download or read book Genomics of Plant Associated Bacteria written by Dennis C. Gross and published by Springer. This book was released on 2014-06-16 with total page 283 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book describes how genomics has revolutionized our scientific understanding of agriculturally important plant-associated bacteria. Each chapter focuses on the genomics of particular bacteria: the first described plant pathogen, Erwinia amylovora; phytoplasmas lacking cell walls; fastidious, phloem-restricted liberibacters; Pseudomonas syringae, which is a genetically tractable model system; Xanthomonas citri, which causes a disease that can devastate citrus crops and Pseudomonas fluorescens, which can protect plants from diseases. Topics considered in this volume include the importance of horizontal gene transfer in originating new bacterial strains and species and advances in transcriptomics that allow us to describe the complex regulatory networks critical to plant-microbe interactions. The availability of the Xanthomonas oryzae genome has led to new technologies in genome editing, which will revolutionize approaches to genetic engineering, even in eukaryotes. The contributions show how genomics has greatly accelerated progress toward understanding the biology of these bacteria and how that understanding can be translated into novel crop protection methods.
Download or read book Plant Associated Bacteria written by Samuel S. Gnanamanickam and published by Springer Science & Business Media. This book was released on 2007-09-29 with total page 716 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume is envisioned as a resource for researchers working with beneficial and harmful groups of bacteria associated with crop plants. The book is divided into two parts, with Part I on beneficial bacteria including chapters on symbiotic nitrogen fixers and rhizosphere bacteria. The second part consists of detailed descriptions of 8 genera of plant pathogenic bacteria, including Agrobacterium and Herbaspirillum. Each chapter covers terminology, molecular phylogeny and more. soft-rot, Pseudomonas, Xanthomonas, Ralstonia, Burkholderia and Acidovorax There is an opening chapter on the plant-associated bacteria survey, molecular phylogeny, genomics and recent advances. And each chapter includes terminology/definitions, molecular phylogeny, methods that can be used (both traditional and latest molecular tools) and applications
Download or read book Plasticity in Plant Growth Promoting and Phytopathogenic Bacteria written by Elena I. Katsy and published by Springer Science & Business Media. This book was released on 2014-01-30 with total page 214 pages. Available in PDF, EPUB and Kindle. Book excerpt: Plasticity in Plant-Growth-Promoting and Phytopathogenic Bacteria brings together the expertise of a panel of researchers from around the world to provide comprehensive up-to-date reviews on the most interesting aspects of genomic and phenotypic plasticity in plant-beneficial and phytopathogenic bacteria. The book covers various topics, including common and specific features in the genomes of symbiotic, plant-growth-promoting, and phytopathogenic bacteria; regulation of conjugative plasmid transfer in rhizobia; genetic and phenotypic variability in plant-beneficial pseudomonads and azospirilla; genomic fluxes in phytopathogenic xanthomonads and pseudomonads; genome plasticity in obligate parasitic Phytoplasmas; comparative genomics of plant-growth-promoting and phytopathogenic Herbaspirillum species; horizontal gene transfer in planta and microevolution of plant-associated bacteria in the phytosphere. Plasticity in Plant-Growth-Promoting and Phytopathogenic Bacteria is recommended for all microbiology and plant biology laboratories.
Download or read book Plant Associated Bacteria written by Samuel S. Gnanamanickam and published by Springer Science & Business Media. This book was released on 2007-09-29 with total page 715 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume is envisioned as a resource for researchers working with beneficial and harmful groups of bacteria associated with crop plants. The book is divided into two parts, with Part I on beneficial bacteria including chapters on symbiotic nitrogen fixers and rhizosphere bacteria. The second part consists of detailed descriptions of 8 genera of plant pathogenic bacteria, including Agrobacterium and Herbaspirillum. Each chapter covers terminology, molecular phylogeny and more. soft-rot, Pseudomonas, Xanthomonas, Ralstonia, Burkholderia and Acidovorax There is an opening chapter on the plant-associated bacteria survey, molecular phylogeny, genomics and recent advances. And each chapter includes terminology/definitions, molecular phylogeny, methods that can be used (both traditional and latest molecular tools) and applications
Download or read book Population and Comparative Genomics of Plant Pathogenic Bacteria written by Jeffrey Jones and published by Frontiers Media SA. This book was released on 2022-09-02 with total page 220 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Plant Pathogenic Bacteria written by Robert W. Jackson and published by Caister Academic Press Limited. This book was released on 2009 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: The third chapter delves into the crucially understudied area of pathogen adaptation to the plant apoplast environment.
Download or read book Molecular Mechanisms of Plant and Microbe Coexistence written by Chandra Shekhar Nautiyal and published by Springer Science & Business Media. This book was released on 2008-07-10 with total page 491 pages. Available in PDF, EPUB and Kindle. Book excerpt: Molecular Mechanisms of Plant and Microbe Coexistence presents studies on the complex and manifold interactions of plants and microbes at the population, genomics and proteomics level. The role of soil microbial diversity in enhancing plant health and plant microbe beneficial symbioses is discussed. Microbial communities are shown in the light of evolution. Main topics include genome coexistence and the functional genomics and proteomics of plant-associated microbes, which could form the basis for new environmentally benign strategies to combat infectious plant diseases and regulate plant growth. Further chapters focus on the role of signaling during the different stages of plant microbe coexistence, in symbiotic or pathogenic relationships, in quorum sensing and plant viral infections. Methods for studying the interactions in the root zone complement the book, which will certainly be of relevance in the practical application to agriculture, food security and for maintaining the balance of our ecosystems.
Download or read book The New Science of Metagenomics written by National Research Council and published by National Academies Press. This book was released on 2007-06-24 with total page 170 pages. Available in PDF, EPUB and Kindle. Book excerpt: Although we can't usually see them, microbes are essential for every part of human life-indeed all life on Earth. The emerging field of metagenomics offers a new way of exploring the microbial world that will transform modern microbiology and lead to practical applications in medicine, agriculture, alternative energy, environmental remediation, and many others areas. Metagenomics allows researchers to look at the genomes of all of the microbes in an environment at once, providing a "meta" view of the whole microbial community and the complex interactions within it. It's a quantum leap beyond traditional research techniques that rely on studying-one at a time-the few microbes that can be grown in the laboratory. At the request of the National Science Foundation, five Institutes of the National Institutes of Health, and the Department of Energy, the National Research Council organized a committee to address the current state of metagenomics and identify obstacles current researchers are facing in order to determine how to best support the field and encourage its success. The New Science of Metagenomics recommends the establishment of a "Global Metagenomics Initiative" comprising a small number of large-scale metagenomics projects as well as many medium- and small-scale projects to advance the technology and develop the standard practices needed to advance the field. The report also addresses database needs, methodological challenges, and the importance of interdisciplinary collaboration in supporting this new field.
Download or read book Plant associated Bacteria written by Heather Lee Tyler and published by . This book was released on 2009 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Both bacteria increased lateral root numbers on Arabidopsis plants and genome annotation indicated each posses the auxin synthesis gene, ipdC. As auxin is known to play a role in lateral root development, subsequent work on lateral root promotion focused on this phytohormone. As part of this work, a plasmid was constructed that expressed the ipdC gene and could be stably maintained without selection pressure. While these enteric endophytes are related to human pathogens and Kp342 was found to have pathogenic potential, the information gained by studying these bacteria could yield insight into enhancing the growth-promoting effects of other endophytes. Thus, the work described here exemplifies how metagenomic, genomic, and biological experiments can be used to gain both an overview and in depth view of plant-bacterial associations.
Download or read book Molecular Aspects of Plant Beneficial Microbes in Agriculture written by Vivek Sharma and published by Academic Press. This book was released on 2020-03-12 with total page 454 pages. Available in PDF, EPUB and Kindle. Book excerpt: Molecular Aspects of Plant Beneficial Microbes in Agriculture explores their diverse interactions, including the pathogenic and symbiotic relationship which leads to either a decrease or increase in crop productivity. Focusing on these environmentally-friendly approaches, the book explores their potential in changing climatic conditions. It presents the exploration and regulation of beneficial microbes in offering sustainable and alternative solutions to the use of chemicals in agriculture. The beneficial microbes presented here are capable of contributing to nutrient balance, growth regulators, suppressing pathogens, orchestrating immune response and improving crop performance. The book also offers insights into the advancements in DNA technology and bioinformatic approaches which have provided in-depth knowledge about the molecular arsenal involved in mineral uptake, nitrogen fixation, growth promotion and biocontrol attributes.
Download or read book The Rhizobiaceae written by Herman P. Spaink and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 576 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Rhizobiaceae, Molecular Biology of Model Plant-Associated Bacteria. This book gives a comprehensive overview on our present molecular biological knowledge about the Rhizobiaceae, which currently can be called the best-studied family of soil bacteria. For many centuries they have attracted the attention of scientists because of their capacity to associate with plants and as a consequence also to specifically modify plant development. Some of these associations are beneficial for the plant, as is the case for the Rhizobiaceae subgroups collectively called rhizobia, which are able to fix nitrogen in a symbiosis with the plant hosts. This symbiosis results in the fonnation of root or stem nodules, as illustrated on the front cover. In contrast, several Rhizobiaceae subgroups can negatively affect plant development and evoke plant diseases. Examples are Agrobacterium tumefaciens andA. rhizogenes which induce the formation of crown galls or hairy roots on the stems of their host plants, respectively (bottom panels on front cover). In addition to the obvious importance of studies on the Rhizobiaceae for agronomy, this research field has resulted in the discovery of many fundamental scientific principles of general interest, which are highlighted in this book. To mention three examples: (i) the discovery of DNA transfer of A.
Download or read book The Science and Applications of Microbial Genomics written by Institute of Medicine and published by National Academies Press. This book was released on 2013-05-02 with total page 429 pages. Available in PDF, EPUB and Kindle. Book excerpt: Over the past several decades, new scientific tools and approaches for detecting microbial species have dramatically enhanced our appreciation of the diversity and abundance of the microbiota and its dynamic interactions with the environments within which these microorganisms reside. The first bacterial genome was sequenced in 1995 and took more than 13 months of work to complete. Today, a microorganism's entire genome can be sequenced in a few days. Much as our view of the cosmos was forever altered in the 17th century with the invention of the telescope, these genomic technologies, and the observations derived from them, have fundamentally transformed our appreciation of the microbial world around us. On June 12 and 13, 2012, the Institute of Medicine's (IOM's) Forum on Microbial Threats convened a public workshop in Washington, DC, to discuss the scientific tools and approaches being used for detecting and characterizing microbial species, and the roles of microbial genomics and metagenomics to better understand the culturable and unculturable microbial world around us. Through invited presentations and discussions, participants examined the use of microbial genomics to explore the diversity, evolution, and adaptation of microorganisms in a wide variety of environments; the molecular mechanisms of disease emergence and epidemiology; and the ways that genomic technologies are being applied to disease outbreak trace back and microbial surveillance. Points that were emphasized by many participants included the need to develop robust standardized sampling protocols, the importance of having the appropriate metadata, data analysis and data management challenges, and information sharing in real time. The Science and Applications of Microbial Genomics summarizes this workshop.
Download or read book Molecular Genetics of Plant Microbe Interactions written by Desh Pal S. Verma and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 362 pages. Available in PDF, EPUB and Kindle. Book excerpt: Increased interest in the basic biology of plants and microorganisms stems from the fact that crop productivity is directly affected by plant-microbe interactions. In spite of the fact that plants exist in the environment amongst diverse species of microorganisms, only a few ever establish a direct relationship. Emerging awareness concerning the indirect effect of microbial association on plant growth and the possibility of using one microbe against another for controlling pathogenic interactions is at the genesis of new fields of studies. The primary reason for a microbe to associate with· photoautotrophic organisms (plants) is to tap its nutritional requirements, fixed carbon, as a source of energy. By hook or by crook, a microbe must survive. Some have evolved mechanisms to exploit plants to develop a niche for their biotropic demands. When in contact with a living plant, microorganisms may live in a passive association using exudates from the plant, invade it pathogenically or coexist with it in symbiosis. The plant responds to the interloper, either reacting in a hypersensitive manner to contain the invasion of pathogens, or by inducing a set of genes that leads toward symbiosis, or by simply succumbing to the invader. Thus, prior to contact wi th the plant, mic roorganism is able to sense the presence of the host and activate accordingly a set of genes required for the forthcoming interaction, whether symbiotic or pathogenic.
Download or read book Genomics of Disease written by J.P. Gustafson and published by Springer Science & Business Media. This book was released on 2008-02-12 with total page 232 pages. Available in PDF, EPUB and Kindle. Book excerpt: This title develops from the 24th Stadler symposium. It explores the general theme "GENOME EXPLOITATION: Data Mining the Genomes". The idea behind the theme is to discuss and illustrate how scientists are going to characterize and make use of the massive amount of information being accumulated about plant and animal genomes. The book presents a state-of-the-art picture on mining the Genome databases. Its chapters are authored by key stars in the field.
Download or read book Molecular Mechanisms of Plant and Microbe Coexistence written by Chandra Shekhar Nautiyal and published by Springer. This book was released on 2009-08-29 with total page 486 pages. Available in PDF, EPUB and Kindle. Book excerpt: Molecular Mechanisms of Plant and Microbe Coexistence presents studies on the complex and manifold interactions of plants and microbes at the population, genomics and proteomics level. The role of soil microbial diversity in enhancing plant health and plant microbe beneficial symbioses is discussed. Microbial communities are shown in the light of evolution. Main topics include genome coexistence and the functional genomics and proteomics of plant-associated microbes, which could form the basis for new environmentally benign strategies to combat infectious plant diseases and regulate plant growth. Further chapters focus on the role of signaling during the different stages of plant microbe coexistence, in symbiotic or pathogenic relationships, in quorum sensing and plant viral infections. Methods for studying the interactions in the root zone complement the book, which will certainly be of relevance in the practical application to agriculture, food security and for maintaining the balance of our ecosystems.
Download or read book Phytoplasmas Plant Pathogenic Bacteria III written by Assunta Bertaccini and published by Springer Nature. This book was released on 2019-11-10 with total page 226 pages. Available in PDF, EPUB and Kindle. Book excerpt: Phytoplasma III is the last of three books in the series covering all the aspects of phytoplasma-associated diseases. Phytoplasmas are a major limiting factor in the quality and productivity of many ornamental, horticultural and economically important agriculture crops worldwide, and losses due to phytoplasma diseases have disastrous consequences for farming communities. As there is no effective cure for these diseases, management strategies focus-on exclusion, minimizing their spread by insect vectors and propagation materials, and developing host plant resistance. This book provides an update on genomics, effectors and pathogenicity factors toward a better understanding of phytoplasma-host metabolic interactions. It offers a comprehensive overview of biological, serological and molecular characterization of the phytoplasmas, including recently developed approaches in diagnostics, such as transcriptomics studies, which have paved the way for analyzing the gene expression pattern in phytoplasmas on infection and revealed the up-regulation of genes associated with hormonal response, transcription factors, and signaling genes. Although phytoplasmas remain the most poorly characterized pathogens, recent studies have identified virulence factors that induce typical disease symptoms and have characterized the unique reductive evolution of the genome. Reviewing the advances in cultivation in axenic media together with the perspectives for future research to reduce the global incidence of these pathogens and the associated agricultural losses, the book is a valuable resource for plant pathologists, researchers in agriculture and PhD students.
Download or read book Microbial Genomics in Sustainable Agroecosystems written by Vijay Tripathi and published by Springer Nature. This book was released on 2019-11-05 with total page 285 pages. Available in PDF, EPUB and Kindle. Book excerpt: In recent decades, significant advances in new methodologies like DNA sequencing and high-throughput sequencing have been used to identify microorganisms and monitor their interactions with different environments. Microbial genomics techniques are opening new approaches to microbiology by revealing how microorganisms affect human beings and the environment. This book covers four major areas: 1) Environmental microbial genomics, 2) Microbial genomics in human health, 3) Microbial genomics in crop improvement and plant health protection, and 4) Genome analysis of microbial pathogens. Within these areas, the topics addressed include: microbial genome diversity, evolution, and microbial genome sequencing; bioinformatics and microarray-based genomic technologies; functional genomics of bioremediation of soil and water from organic and inorganic pollutants and carbon management; functional genomics of microbial pathogens and relevant microorganisms; functional genomics of model microorganisms; and applied functional genomics. Given its scope, the book offers a comprehensive source of information on the latest applications of microorganisms and microbial genomics to enhance the sustainability of agriculture and the environment.
